Wall clock time and date at job start Sun Mar 29 2020 23:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48496 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46812 * 299.99633 * 3 2 1 6 6 H 1.48496 * 109.47229 * 59.99596 * 3 2 1 7 7 C 1.40046 * 120.00247 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 180.02562 * 7 2 1 9 9 C 1.46375 * 119.99979 * 0.02562 * 7 2 1 10 10 O 1.21693 * 120.00007 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00099 * 179.97438 * 9 7 2 12 12 C 1.46504 * 119.99637 * 180.02562 * 11 9 7 13 13 H 1.08993 * 109.47378 * 324.99749 * 12 11 9 14 14 C 1.53006 * 109.46883 * 204.99943 * 12 11 9 15 15 C 1.50699 * 109.46610 * 65.00372 * 14 12 11 16 16 C 1.34665 * 126.59423 * 85.02941 * 15 14 12 17 17 N 1.34124 * 108.02166 * 179.97438 * 16 15 14 18 18 C 1.30493 * 109.25813 * 359.97438 * 17 16 15 19 19 N 1.35044 * 108.70088 * 359.77154 * 18 17 16 20 20 H 0.97000 * 126.39882 * 180.26106 * 19 18 17 21 21 C 1.50699 * 109.47137 * 85.00393 * 12 11 9 22 22 O 1.20827 * 120.00172 * 359.97438 * 21 12 11 23 23 O 1.34225 * 120.00198 * 179.97438 * 21 12 11 24 24 H 0.96996 * 120.00376 * 0.02562 * 1 2 3 25 25 H 0.96998 * 120.00328 * 0.02562 * 11 9 7 26 26 H 1.08992 * 109.47046 * 185.00109 * 14 12 11 27 27 H 1.08997 * 109.47395 * 305.00649 * 14 12 11 28 28 H 1.08002 * 125.98526 * 359.95283 * 16 15 14 29 29 H 1.08005 * 125.65140 * 180.02562 * 18 17 16 30 30 H 0.96700 * 117.00440 * 179.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8819 2.3965 1.2124 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4805 0.0005 10 8 0.0582 -2.4805 -0.0004 11 7 1.9491 -3.6477 0.0005 12 6 1.2165 -4.9164 0.0000 13 1 0.3057 -4.8103 0.5891 14 6 2.0935 -6.0119 0.6097 15 6 2.3497 -5.7001 2.0617 16 6 1.5525 -6.0095 3.1020 17 7 2.1378 -5.5591 4.2216 18 6 3.2676 -4.9828 3.9147 19 7 3.4406 -5.0537 2.5772 20 1 4.1958 -4.7091 2.0754 21 6 0.8587 -5.2892 -1.4156 22 8 1.1820 -4.5689 -2.3302 23 8 0.1809 -6.4216 -1.6606 24 1 -0.4850 0.8400 -0.0004 25 1 2.9190 -3.6477 0.0009 26 1 1.5842 -6.9721 0.5287 27 1 3.0422 -6.0575 0.0750 28 1 0.6074 -6.5290 3.0447 29 1 3.9531 -4.5283 4.6148 30 1 -0.0262 -6.6183 -2.5845 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137695364.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:12:06 Heat of formation + Delta-G solvation = -74.003556 kcal Electronic energy + Delta-G solvation = -18607.162996 eV Core-core repulsion = 15403.414462 eV Total energy + Delta-G solvation = -3203.748534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.84750 -39.87845 -37.40261 -35.58855 -34.61423 -32.54916 -32.18372 -31.05096 -28.29684 -26.11042 -24.52664 -21.49409 -21.25572 -20.61552 -19.58214 -17.94191 -17.64348 -17.22334 -16.28329 -15.55620 -15.04221 -14.92564 -14.55334 -14.15853 -13.98657 -13.46620 -13.15408 -12.64557 -12.47867 -12.40011 -12.03904 -11.45761 -11.17903 -11.08532 -11.00227 -10.55438 -10.27043 -10.13947 -9.79840 -9.77822 -8.92452 -8.18585 -7.89160 -7.71966 -6.25633 -4.71516 2.18106 2.72840 3.09268 3.16824 3.21131 3.26556 3.35890 3.46418 4.03927 4.49172 4.56774 4.82451 5.00058 5.06205 5.19758 5.54030 5.67833 5.71782 5.79899 5.90921 6.07609 6.41183 6.88211 6.92114 7.36503 7.53911 7.64769 7.84958 8.19393 8.24529 8.37909 8.95463 9.33107 10.50223 10.68499 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.016920 B = 0.008126 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.413261 B = 3444.908773 C = 4623.479657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.560 3.440 10 O -0.574 6.574 11 N -0.738 5.738 12 C 0.173 3.827 13 H 0.121 0.879 14 C -0.043 4.043 15 C -0.009 4.009 16 C -0.021 4.021 17 N -0.496 5.496 18 C 0.183 3.817 19 N -0.559 5.559 20 H 0.418 0.582 21 C 0.458 3.542 22 O -0.496 6.496 23 O -0.526 6.526 24 H 0.269 0.731 25 H 0.381 0.619 26 H 0.108 0.892 27 H 0.075 0.925 28 H 0.168 0.832 29 H 0.205 0.795 30 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.601 -11.333 2.049 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.365 3.635 10 O -0.456 6.456 11 N -0.394 5.394 12 C 0.063 3.937 13 H 0.138 0.862 14 C -0.082 4.082 15 C -0.125 4.125 16 C -0.169 4.169 17 N -0.215 5.215 18 C -0.100 4.100 19 N -0.162 5.162 20 H 0.256 0.744 21 C 0.297 3.703 22 O -0.381 6.381 23 O -0.337 6.337 24 H 0.080 0.920 25 H 0.212 0.788 26 H 0.126 0.874 27 H 0.094 0.906 28 H 0.185 0.815 29 H 0.221 0.779 30 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.339 -10.999 3.032 13.052 hybrid contribution 1.428 1.097 -1.818 2.559 sum 7.766 -9.902 1.215 12.643 Atomic orbital electron populations 1.70015 1.07068 1.27335 1.34778 1.25709 0.94663 1.00359 0.92606 0.86289 0.80365 0.81660 0.78280 1.18815 1.20083 1.20098 1.20804 0.93475 0.89076 1.54255 0.91446 1.18253 0.87254 0.82138 0.75856 1.90615 1.14032 1.86301 1.54662 1.46091 1.08199 1.03401 1.81661 1.20098 0.98959 0.86702 0.87983 0.86191 1.20241 1.00475 0.98780 0.88732 1.20889 0.91089 1.04498 0.96038 1.22050 1.01061 1.06206 0.87548 1.70239 1.06691 1.14703 1.29909 1.24858 0.98054 1.04068 0.83060 1.43205 1.19237 1.44790 1.08956 0.74446 1.24795 0.74086 0.77415 0.94033 1.90710 1.50584 1.50210 1.46642 1.84564 1.70398 1.42764 1.35977 0.92023 0.78759 0.87421 0.90597 0.81484 0.77880 0.74260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -23.02 11.83 55.55 0.66 -22.37 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.91 20.17 29.56 -169.99 -5.02 15.14 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -15.11 9.54 -35.63 -0.34 -15.45 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.56 15.67 7.58 -12.99 -0.10 15.57 16 10 O -0.57 -18.46 14.68 5.20 0.08 -18.39 16 11 N -0.74 -15.66 4.32 -56.34 -0.24 -15.90 16 12 C 0.17 3.09 2.47 -69.08 -0.17 2.92 16 13 H 0.12 2.43 7.58 -51.93 -0.39 2.04 16 14 C -0.04 -0.54 5.28 -27.88 -0.15 -0.69 16 15 C -0.01 -0.13 6.22 -81.60 -0.51 -0.63 16 16 C -0.02 -0.31 11.79 -17.82 -0.21 -0.52 16 17 N -0.50 -7.97 11.25 -14.67 -0.17 -8.14 16 18 C 0.18 2.37 13.04 -90.38 -1.18 1.19 16 19 N -0.56 -6.73 6.15 -10.30 -0.06 -6.80 16 20 H 0.42 3.85 8.96 -40.82 -0.37 3.48 16 21 C 0.46 8.42 7.66 36.01 0.28 8.70 16 22 O -0.50 -11.24 17.08 -18.75 -0.32 -11.56 16 23 O -0.53 -7.24 13.23 -39.25 -0.52 -7.76 16 24 H 0.27 7.34 8.29 -40.82 -0.34 7.01 16 25 H 0.38 6.97 8.58 -40.82 -0.35 6.62 16 26 H 0.11 1.12 7.99 -51.93 -0.42 0.71 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 29 H 0.20 1.81 8.06 -52.48 -0.42 1.38 16 30 H 0.40 3.85 9.10 45.56 0.41 4.26 16 LS Contribution 281.11 15.07 4.24 4.24 Total: -1.00 -39.75 281.11 -5.76 -45.51 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -1.92 Total: 12.60 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -2.47 Total: 13.42 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.19 Total: -53.20 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.76 Total: -37.71 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -39.75 -5.76 -45.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137695364.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.495 kcal (2) G-P(sol) polarization free energy of solvation -39.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds