Wall clock time and date at job start Sun Mar 29 2020 23:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38423 * 122.53796 * 2 1 4 4 C 1.33390 * 114.91764 * 180.27220 * 3 2 1 5 5 S 1.75887 * 109.59564 * 359.76939 * 4 3 2 6 6 C 1.33391 * 122.53753 * 179.82751 * 2 1 3 7 7 C 1.50697 * 125.20337 * 0.02562 * 6 2 1 8 8 C 1.52997 * 109.47466 * 89.71858 * 7 6 2 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00193 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99767 * 180.02562 * 10 9 8 13 13 C 1.37091 * 119.99890 * 179.97438 * 12 10 9 14 14 H 1.07995 * 120.00333 * 0.02562 * 13 12 10 15 15 C 1.38951 * 119.99923 * 179.97438 * 13 12 10 16 16 N 1.31416 * 120.00036 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99931 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47371 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00413 * 17 15 13 20 20 H 1.48504 * 109.47204 * 240.00125 * 17 15 13 21 21 H 1.08994 * 109.47308 * 270.17493 * 1 2 3 22 22 H 1.08997 * 109.47040 * 30.17553 * 1 2 3 23 23 H 1.09003 * 109.46899 * 150.16745 * 1 2 3 24 24 H 1.07997 * 122.54089 * 0.03744 * 3 2 1 25 25 H 1.07998 * 125.20343 * 179.74339 * 4 3 2 26 26 H 1.09002 * 109.47120 * 329.71610 * 7 6 2 27 27 H 1.08998 * 109.46862 * 209.72413 * 7 6 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 29 29 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 30 30 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 31 31 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 32 32 H 0.97005 * 119.99680 * 359.97438 * 12 10 9 33 33 H 0.96996 * 119.99812 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5737 0.9901 -0.0057 5 16 3.9386 -0.7305 -0.0049 6 6 2.2245 -1.1245 0.0034 7 6 1.6537 -2.5192 0.0070 8 6 1.4544 -2.9926 -1.4342 9 6 0.8743 -4.4083 -1.4303 10 6 0.6787 -4.8748 -2.8500 11 8 0.9737 -4.1464 -3.7738 12 7 0.1748 -6.1010 -3.0930 13 6 -0.0036 -6.5251 -4.3844 14 1 0.2599 -5.8769 -5.2070 15 6 -0.5226 -7.7895 -4.6349 16 7 -0.8428 -8.5786 -3.6340 17 14 -0.7664 -8.3672 -6.3946 18 1 -0.3322 -7.2994 -7.3308 19 1 0.0418 -9.5905 -6.6304 20 1 -2.2022 -8.6712 -6.6213 21 1 -0.3633 0.0031 1.0276 22 1 -0.3633 0.8884 -0.5165 23 1 -0.3633 -0.8915 -0.5112 24 1 1.7965 2.1464 0.0006 25 1 4.3078 1.7822 -0.0106 26 1 0.6945 -2.5179 0.5249 27 1 2.3418 -3.1920 0.5187 28 1 2.4136 -2.9939 -1.9520 29 1 0.7663 -2.3196 -1.9457 30 1 1.5621 -5.0815 -0.9187 31 1 -0.0848 -4.4066 -0.9126 32 1 -0.0615 -6.6834 -2.3541 33 1 -1.2053 -9.4610 -3.8089 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164203323.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:47 Heat of formation + Delta-G solvation = -51.504931 kcal Electronic energy + Delta-G solvation = -15622.743861 eV Core-core repulsion = 12966.264155 eV Total energy + Delta-G solvation = -2656.479706 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22907 -39.37268 -36.21482 -35.43573 -33.28550 -31.86341 -30.00589 -27.47471 -26.00497 -23.74267 -22.59723 -20.89283 -19.86650 -19.22511 -18.20964 -17.49133 -16.62480 -16.50063 -16.02101 -15.80884 -15.02856 -14.91224 -14.57238 -13.92828 -13.84944 -13.58627 -13.26106 -13.07568 -12.92665 -12.76083 -12.52431 -12.40993 -12.40049 -12.16789 -12.07959 -11.69347 -11.53168 -11.43949 -10.36230 -10.02332 -9.45070 -9.20784 -8.47817 -5.96824 0.12262 0.78103 1.15011 1.35908 1.41050 1.55456 1.82163 2.05582 2.29922 3.19882 3.23852 3.83259 4.07438 4.12535 4.21546 4.33949 4.44392 4.58920 4.66743 4.74516 4.77137 4.86076 4.87801 4.94814 5.15375 5.16803 5.27312 5.40556 5.42500 5.59794 5.72016 5.99733 6.58620 7.11484 7.55888 8.11705 8.69799 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.046093 B = 0.003650 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.325258 B = 7670.093013 C = 7744.142104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.120 4.120 3 C -0.139 4.139 4 C -0.216 4.216 5 S 0.066 5.934 6 C -0.187 4.187 7 C -0.041 4.041 8 C -0.081 4.081 9 C -0.119 4.119 10 C 0.433 3.567 11 O -0.640 6.640 12 N -0.573 5.573 13 C -0.338 4.338 14 H 0.077 0.923 15 C -0.012 4.012 16 N -0.919 5.919 17 Si 0.993 3.007 18 H -0.275 1.275 19 H -0.270 1.270 20 H -0.269 1.269 21 H 0.083 0.917 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.159 0.841 25 H 0.185 0.815 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.398 0.602 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 14.450 12.142 19.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.132 4.132 3 C -0.169 4.169 4 C -0.351 4.351 5 S 0.330 5.670 6 C -0.304 4.304 7 C -0.080 4.080 8 C -0.120 4.120 9 C -0.159 4.159 10 C 0.222 3.778 11 O -0.528 6.528 12 N -0.210 5.210 13 C -0.467 4.467 14 H 0.095 0.905 15 C -0.212 4.212 16 N -0.560 5.560 17 Si 0.816 3.184 18 H -0.199 1.199 19 H -0.195 1.195 20 H -0.194 1.194 21 H 0.101 0.899 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.177 0.823 25 H 0.202 0.798 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.232 0.768 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.824 13.891 11.541 18.976 hybrid contribution -1.332 0.104 -0.685 1.501 sum 4.492 13.996 10.856 18.273 Atomic orbital electron populations 1.20578 0.88757 1.03098 1.03023 1.19213 0.98505 0.91809 1.03653 1.20329 0.93028 0.99895 1.03643 1.25841 1.00295 0.98565 1.10388 1.84327 1.06712 1.02127 1.73798 1.24469 0.95624 0.99671 1.10650 1.20146 1.02084 0.89608 0.96188 1.21111 1.00449 0.94414 0.95994 1.21496 1.04091 0.98079 0.92184 1.21176 0.81830 0.82182 0.92618 1.90482 1.57455 1.56500 1.48364 1.42015 1.56282 1.14467 1.08212 1.19723 1.41635 1.00159 0.85207 0.90538 1.26047 0.96077 0.95419 1.03662 1.69676 1.43543 1.10090 1.32721 0.84879 0.78393 0.78055 0.77050 1.19925 1.19492 1.19407 0.89866 0.90679 0.91999 0.82346 0.79752 0.88157 0.89744 0.93729 0.92956 0.88024 0.87573 0.76817 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.60 71.24 0.68 -1.12 16 2 C -0.12 -2.72 5.80 -20.92 -0.12 -2.84 16 3 C -0.14 -2.77 9.98 21.22 0.21 -2.56 16 4 C -0.22 -4.22 11.23 66.72 0.75 -3.47 16 5 S 0.07 1.52 23.33 -56.49 -1.32 0.20 16 6 C -0.19 -4.61 5.76 24.59 0.14 -4.47 16 7 C -0.04 -0.97 5.07 29.85 0.15 -0.82 16 8 C -0.08 -2.57 4.49 30.59 0.14 -2.43 16 9 C -0.12 -3.97 5.70 29.85 0.17 -3.80 16 10 C 0.43 21.05 7.78 87.66 0.68 21.73 16 11 O -0.64 -36.58 15.56 -3.05 -0.05 -36.62 16 12 N -0.57 -29.98 5.29 -306.99 -1.62 -31.61 16 13 C -0.34 -19.56 9.68 84.04 0.81 -18.75 16 14 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 15 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 16 N -0.92 -49.95 13.05 21.66 0.28 -49.67 16 17 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 20 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 21 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 23 H 0.06 1.29 6.95 -2.39 -0.02 1.28 16 24 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 25 H 0.19 2.55 8.06 -2.91 -0.02 2.52 16 26 H 0.10 2.00 7.33 -2.39 -0.02 1.98 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.04 1.61 8.10 -2.39 -0.02 1.59 16 29 H 0.05 1.83 7.79 -2.39 -0.02 1.81 16 30 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 32 H 0.40 19.58 7.90 -92.70 -0.73 18.85 16 33 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -68.76 299.02 3.79 -64.97 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: 0.38 Total: 26.09 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.09 Total: -18.73 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -1.34 Total: -81.28 kcal Atomic # 8 Polarization: -36.58 SS G_CDS: -0.05 Total: -36.62 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.32 Total: 0.20 kcal Total: -68.76 3.79 -64.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164203323.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.469 kcal (2) G-P(sol) polarization free energy of solvation -68.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds