Wall clock time and date at job start Sun Mar 29 2020 23:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38431 * 122.53815 * 2 1 4 4 C 1.33383 * 114.91775 * 180.27443 * 3 2 1 5 5 S 1.75886 * 109.59728 * 359.77137 * 4 3 2 6 6 C 1.33385 * 122.54307 * 179.83371 * 2 1 3 7 7 C 1.50709 * 125.20127 * 0.02562 * 6 2 1 8 8 N 1.46901 * 109.46798 * 89.72328 * 7 6 2 9 9 C 1.47962 * 110.99645 * 170.00157 * 8 7 6 10 10 C 1.53939 * 86.17954 * 222.41370 * 9 8 7 11 11 O 1.42901 * 113.73443 * 269.25769 * 10 9 8 12 12 C 1.50699 * 113.73181 * 138.07765 * 10 9 8 13 13 H 1.07999 * 120.00015 * 4.91121 * 12 10 9 14 14 C 1.37879 * 119.99686 * 184.90847 * 12 10 9 15 15 N 1.31521 * 119.99972 * 13.82310 * 14 12 10 16 16 Si 1.86792 * 119.99875 * 193.81760 * 14 12 10 17 17 H 1.48504 * 109.47216 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47601 * 300.00327 * 16 14 12 19 19 H 1.48506 * 109.47155 * 60.00602 * 16 14 12 20 20 C 1.47957 * 111.00157 * 70.64161 * 8 7 6 21 21 H 1.09007 * 109.47037 * 270.16682 * 1 2 3 22 22 H 1.08994 * 109.47385 * 30.16422 * 1 2 3 23 23 H 1.08999 * 109.46811 * 150.17346 * 1 2 3 24 24 H 1.07997 * 122.53826 * 0.04257 * 3 2 1 25 25 H 1.08003 * 125.20231 * 179.78972 * 4 3 2 26 26 H 1.08996 * 109.47024 * 329.71927 * 7 6 2 27 27 H 1.08995 * 109.46678 * 209.72010 * 7 6 2 28 28 H 1.08999 * 113.76019 * 108.09949 * 9 8 7 29 29 H 1.09000 * 113.85879 * 336.74722 * 9 8 7 30 30 H 0.96693 * 113.99776 * 171.47023 * 11 10 9 31 31 H 0.97001 * 119.99982 * 5.87544 * 15 14 12 32 32 H 1.08994 * 113.76072 * 23.25977 * 20 8 7 33 33 H 1.09001 * 113.75391 * 251.89917 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5736 0.9901 -0.0058 5 16 3.9386 -0.7304 -0.0051 6 6 2.2245 -1.1244 0.0033 7 6 1.6537 -2.5192 0.0068 8 7 1.4626 -2.9735 -1.3771 9 6 1.1317 -4.4150 -1.4210 10 6 2.1022 -4.4962 -2.6132 11 8 1.4747 -4.2915 -3.8806 12 6 2.9932 -5.7113 -2.5882 13 1 2.8582 -6.4643 -1.8259 14 6 3.9806 -5.8617 -3.5387 15 7 4.3290 -4.8415 -4.2921 16 14 4.8237 -7.5143 -3.7562 17 1 5.8405 -7.4132 -4.8338 18 1 5.4867 -7.9029 -2.4855 19 1 3.8145 -8.5405 -4.1220 20 6 2.7626 -3.2317 -2.0348 21 1 -0.3633 0.0030 1.0277 22 1 -0.3634 0.8884 -0.5163 23 1 -0.3633 -0.8915 -0.5111 24 1 1.7965 2.1464 0.0007 25 1 4.3077 1.7823 -0.0100 26 1 0.6946 -2.5180 0.5246 27 1 2.3419 -3.1921 0.5183 28 1 0.0941 -4.6195 -1.6848 29 1 1.4651 -4.9708 -0.5446 30 1 2.0949 -4.2119 -4.6182 31 1 3.9535 -3.9632 -4.1231 32 1 3.5739 -3.4398 -1.3373 33 1 3.0280 -2.4907 -2.7889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225601107.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:48 Heat of formation + Delta-G solvation = 14.336459 kcal Electronic energy + Delta-G solvation = -16717.109345 eV Core-core repulsion = 14063.484736 eV Total energy + Delta-G solvation = -2653.624609 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.42100 -37.99047 -34.74199 -32.21837 -31.50226 -29.35369 -26.71902 -25.46344 -24.68224 -22.84237 -21.68787 -18.96430 -18.10537 -17.83268 -16.90136 -15.42976 -15.20191 -14.80222 -14.33889 -13.86662 -13.60705 -13.49395 -13.37389 -12.61722 -12.19263 -12.13129 -11.85545 -11.76742 -11.51359 -11.17452 -10.95198 -10.89402 -10.75236 -10.44275 -10.23914 -10.15104 -9.18785 -8.73649 -8.58902 -8.26076 -8.07695 -7.80552 -6.55600 -4.33850 1.19231 1.85794 2.23139 2.86518 3.35068 3.38806 3.57001 4.38804 4.70816 4.90759 5.04885 5.07003 5.36342 5.54393 5.61774 5.65307 5.71527 5.78060 5.85063 5.89404 6.03623 6.11812 6.21552 6.27588 6.49051 6.64191 6.73187 6.74162 6.98268 7.06646 7.75562 7.84520 8.19929 8.58463 9.04571 9.36848 10.75874 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.031447 B = 0.006240 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.179589 B = 4486.061478 C = 4931.360047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.104 4.104 3 C -0.130 4.130 4 C -0.224 4.224 5 S 0.099 5.901 6 C -0.156 4.156 7 C 0.087 3.913 8 N -0.470 5.470 9 C 0.018 3.982 10 C 0.223 3.777 11 O -0.565 6.565 12 C -0.620 4.620 13 H 0.058 0.942 14 C 0.035 3.965 15 N -0.900 5.900 16 Si 1.064 2.936 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.285 1.285 20 C -0.017 4.017 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.135 0.865 25 H 0.160 0.840 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.371 0.629 31 H 0.271 0.729 32 H 0.063 0.937 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 8.786 8.984 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.161 4.161 4 C -0.360 4.360 5 S 0.364 5.636 6 C -0.274 4.274 7 C -0.043 4.043 8 N -0.193 5.193 9 C -0.110 4.110 10 C 0.182 3.818 11 O -0.371 6.371 12 C -0.658 4.658 13 H 0.077 0.923 14 C -0.170 4.170 15 N -0.536 5.536 16 Si 0.891 3.109 17 H -0.206 1.206 18 H -0.213 1.213 19 H -0.211 1.211 20 C -0.146 4.146 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.094 0.906 24 H 0.152 0.848 25 H 0.177 0.823 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.220 0.780 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.340 7.603 8.165 11.237 hybrid contribution -1.135 1.335 1.169 2.107 sum -2.475 8.938 9.334 13.159 Atomic orbital electron populations 1.20487 0.89925 1.03169 1.01504 1.18777 0.97427 0.91367 1.04091 1.19995 0.92870 0.99020 1.04194 1.25520 0.99689 0.99272 1.11504 1.84450 1.06432 1.00003 1.72686 1.24216 0.95212 0.98915 1.09071 1.21125 0.99563 0.89611 0.93974 1.68702 1.22244 1.17363 1.10970 1.24022 1.00894 0.87742 0.98354 1.20017 0.88953 0.91239 0.81570 1.86225 1.38045 1.95401 1.17473 1.22334 1.17985 1.07532 1.17989 0.92327 1.25914 0.94598 1.04228 0.92293 1.70886 1.42368 1.00766 1.39588 0.83638 0.76287 0.74473 0.76503 1.20569 1.21321 1.21097 1.24825 0.90851 1.00339 0.98630 0.91964 0.91949 0.90602 0.84756 0.82288 0.89601 0.93610 0.90333 0.91339 0.78041 0.91741 0.91853 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.60 36.01 0.35 -0.83 16 2 C -0.10 -1.56 5.80 -106.25 -0.62 -2.18 16 3 C -0.13 -1.75 9.98 -41.21 -0.41 -2.16 16 4 C -0.22 -3.01 11.23 29.04 0.33 -2.69 16 5 S 0.10 1.56 23.06 -107.50 -2.48 -0.92 16 6 C -0.16 -2.60 5.57 -36.00 -0.20 -2.80 16 7 C 0.09 1.52 4.68 -4.97 -0.02 1.49 16 8 N -0.47 -9.71 6.25 -239.69 -1.50 -11.21 16 9 C 0.02 0.40 7.36 -2.76 -0.02 0.38 16 10 C 0.22 5.60 1.08 -90.84 -0.10 5.50 16 11 O -0.56 -14.83 13.45 -35.23 -0.47 -15.31 16 12 C -0.62 -16.80 8.56 -34.44 -0.29 -17.09 16 13 H 0.06 1.58 7.85 -52.49 -0.41 1.16 16 14 C 0.04 0.96 5.26 -17.82 -0.09 0.87 16 15 N -0.90 -25.26 12.80 55.43 0.71 -24.55 16 16 Si 1.06 23.99 29.93 -169.99 -5.09 18.90 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 C -0.02 -0.39 5.65 -2.77 -0.02 -0.41 16 21 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 22 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 23 H 0.08 1.08 7.26 -51.93 -0.38 0.70 16 24 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 25 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 26 H 0.09 1.33 7.33 -51.93 -0.38 0.95 16 27 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 28 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.07 1.40 7.75 -51.93 -0.40 1.00 16 30 H 0.37 9.65 6.95 45.56 0.32 9.97 16 31 H 0.27 7.52 5.52 -40.82 -0.23 7.30 16 32 H 0.06 1.49 7.73 -51.93 -0.40 1.09 16 33 H 0.07 1.67 7.79 -51.93 -0.40 1.26 16 LS Contribution 287.99 15.07 4.34 4.34 Total: -1.00 -29.12 287.99 -9.19 -38.31 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -3.59 Total: 10.34 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -1.10 Total: -19.91 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.79 Total: -35.76 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.47 Total: -15.31 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.09 Total: 18.90 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.48 Total: -0.92 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.12 -9.19 -38.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225601107.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.643 kcal (2) G-P(sol) polarization free energy of solvation -29.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds