Wall clock time and date at job start Sun Mar 29 2020 23:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38431 * 122.53815 * 2 1 4 4 C 1.33383 * 114.91775 * 180.27443 * 3 2 1 5 5 S 1.75886 * 109.59728 * 359.77137 * 4 3 2 6 6 C 1.33385 * 122.54307 * 179.83371 * 2 1 3 7 7 C 1.50709 * 125.20127 * 0.02562 * 6 2 1 8 8 N 1.46901 * 109.46798 * 89.72328 * 7 6 2 9 9 C 1.47962 * 110.99645 * 170.00157 * 8 7 6 10 10 C 1.53939 * 86.17954 * 222.41370 * 9 8 7 11 11 O 1.42901 * 113.73443 * 269.25769 * 10 9 8 12 12 C 1.50699 * 113.73181 * 138.07765 * 10 9 8 13 13 H 1.07999 * 120.00015 * 4.91121 * 12 10 9 14 14 C 1.37879 * 119.99686 * 184.90847 * 12 10 9 15 15 N 1.31521 * 119.99972 * 13.82310 * 14 12 10 16 16 Si 1.86792 * 119.99875 * 193.81760 * 14 12 10 17 17 H 1.48504 * 109.47216 * 180.02562 * 16 14 12 18 18 H 1.48504 * 109.47601 * 300.00327 * 16 14 12 19 19 H 1.48506 * 109.47155 * 60.00602 * 16 14 12 20 20 C 1.47957 * 111.00157 * 70.64161 * 8 7 6 21 21 H 1.09007 * 109.47037 * 270.16682 * 1 2 3 22 22 H 1.08994 * 109.47385 * 30.16422 * 1 2 3 23 23 H 1.08999 * 109.46811 * 150.17346 * 1 2 3 24 24 H 1.07997 * 122.53826 * 0.04257 * 3 2 1 25 25 H 1.08003 * 125.20231 * 179.78972 * 4 3 2 26 26 H 1.08996 * 109.47024 * 329.71927 * 7 6 2 27 27 H 1.08995 * 109.46678 * 209.72010 * 7 6 2 28 28 H 1.08999 * 113.76019 * 108.09949 * 9 8 7 29 29 H 1.09000 * 113.85879 * 336.74722 * 9 8 7 30 30 H 0.96693 * 113.99776 * 171.47023 * 11 10 9 31 31 H 0.97001 * 119.99982 * 5.87544 * 15 14 12 32 32 H 1.08994 * 113.76072 * 23.25977 * 20 8 7 33 33 H 1.09001 * 113.75391 * 251.89917 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1670 0.0000 4 6 3.5736 0.9901 -0.0058 5 16 3.9386 -0.7304 -0.0051 6 6 2.2245 -1.1244 0.0033 7 6 1.6537 -2.5192 0.0068 8 7 1.4626 -2.9735 -1.3771 9 6 1.1317 -4.4150 -1.4210 10 6 2.1022 -4.4962 -2.6132 11 8 1.4747 -4.2915 -3.8806 12 6 2.9932 -5.7113 -2.5882 13 1 2.8582 -6.4643 -1.8259 14 6 3.9806 -5.8617 -3.5387 15 7 4.3290 -4.8415 -4.2921 16 14 4.8237 -7.5143 -3.7562 17 1 5.8405 -7.4132 -4.8338 18 1 5.4867 -7.9029 -2.4855 19 1 3.8145 -8.5405 -4.1220 20 6 2.7626 -3.2317 -2.0348 21 1 -0.3633 0.0030 1.0277 22 1 -0.3634 0.8884 -0.5163 23 1 -0.3633 -0.8915 -0.5111 24 1 1.7965 2.1464 0.0007 25 1 4.3077 1.7823 -0.0100 26 1 0.6946 -2.5180 0.5246 27 1 2.3419 -3.1921 0.5183 28 1 0.0941 -4.6195 -1.6848 29 1 1.4651 -4.9708 -0.5446 30 1 2.0949 -4.2119 -4.6182 31 1 3.9535 -3.9632 -4.1231 32 1 3.5739 -3.4398 -1.3373 33 1 3.0280 -2.4907 -2.7889 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225601107.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:26:47 Heat of formation + Delta-G solvation = -6.571600 kcal Electronic energy + Delta-G solvation = -16718.015987 eV Core-core repulsion = 14063.484736 eV Total energy + Delta-G solvation = -2654.531250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14221 -39.20324 -36.62337 -34.30051 -32.80978 -30.62033 -28.34087 -27.25956 -26.34152 -24.24297 -23.06676 -20.81601 -19.93144 -19.15729 -18.17866 -17.25837 -16.69520 -16.37820 -16.02611 -15.62831 -15.14811 -14.86694 -14.70683 -14.01610 -13.77841 -13.72704 -13.31155 -13.00034 -12.88327 -12.79756 -12.62589 -12.45446 -12.36528 -12.09937 -11.94742 -11.58050 -11.09698 -10.73795 -10.33326 -9.70281 -9.51738 -9.27292 -8.68610 -6.48551 0.04651 0.70479 1.10438 1.54323 1.59363 1.76748 1.80811 2.52061 2.90102 3.04685 3.62775 3.75216 4.00004 4.07119 4.13906 4.18774 4.31220 4.51663 4.58247 4.61940 4.70042 4.71082 4.84528 4.84639 5.12189 5.14131 5.14716 5.28179 5.55755 5.65367 5.78443 6.05205 6.08264 6.44029 6.98223 7.29096 8.62490 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.031447 B = 0.006240 C = 0.005677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.179589 B = 4486.061478 C = 4931.360047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.098 4.098 3 C -0.137 4.137 4 C -0.207 4.207 5 S 0.049 5.951 6 C -0.189 4.189 7 C 0.092 3.908 8 N -0.468 5.468 9 C 0.027 3.973 10 C 0.197 3.803 11 O -0.573 6.573 12 C -0.638 4.638 13 H 0.055 0.945 14 C -0.008 4.008 15 N -0.918 5.918 16 Si 1.110 2.890 17 H -0.282 1.282 18 H -0.271 1.271 19 H -0.273 1.273 20 C 0.004 3.996 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.168 0.832 25 H 0.189 0.811 26 H 0.107 0.893 27 H 0.040 0.960 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.367 0.633 31 H 0.262 0.738 32 H 0.052 0.948 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.398 9.723 9.986 14.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.167 4.167 4 C -0.343 4.343 5 S 0.314 5.686 6 C -0.307 4.307 7 C -0.038 4.038 8 N -0.190 5.190 9 C -0.101 4.101 10 C 0.156 3.844 11 O -0.379 6.379 12 C -0.676 4.676 13 H 0.073 0.927 14 C -0.209 4.209 15 N -0.555 5.555 16 Si 0.932 3.068 17 H -0.208 1.208 18 H -0.196 1.196 19 H -0.199 1.199 20 C -0.126 4.126 21 H 0.102 0.898 22 H 0.098 0.902 23 H 0.077 0.923 24 H 0.185 0.815 25 H 0.206 0.794 26 H 0.125 0.875 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.215 0.785 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.944 8.551 9.189 12.701 hybrid contribution -1.001 1.152 0.894 1.769 sum -2.945 9.703 10.083 14.299 Atomic orbital electron populations 1.20545 0.88343 1.03192 1.02906 1.19226 0.98709 0.91381 1.01808 1.20346 0.92766 0.99900 1.03669 1.25886 1.00534 0.97954 1.09897 1.84600 1.07196 1.03001 1.73801 1.24152 0.95358 0.98871 1.12278 1.21090 1.00640 0.90243 0.91779 1.68618 1.20406 1.16611 1.13400 1.23964 1.00455 0.88617 0.97099 1.20361 0.90435 0.91591 0.81990 1.86207 1.38280 1.95472 1.17968 1.22624 1.18474 1.08285 1.18189 0.92682 1.27196 0.95133 1.06597 0.91950 1.70977 1.43176 1.00882 1.40499 0.83029 0.75685 0.71090 0.77016 1.20751 1.19645 1.19891 1.24418 0.91499 0.98705 0.98010 0.89796 0.90165 0.92293 0.81503 0.79353 0.87501 0.94221 0.89671 0.90273 0.78479 0.92661 0.92971 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.06 9.60 71.24 0.68 -1.38 16 2 C -0.10 -2.72 5.80 -20.92 -0.12 -2.84 16 3 C -0.14 -3.26 9.98 21.22 0.21 -3.04 16 4 C -0.21 -5.08 11.23 66.72 0.75 -4.33 16 5 S 0.05 1.54 23.06 -56.49 -1.30 0.24 16 6 C -0.19 -6.13 5.57 24.59 0.14 -5.99 16 7 C 0.09 3.14 4.68 85.56 0.40 3.54 16 8 N -0.47 -19.23 6.25 -915.44 -5.72 -24.95 16 9 C 0.03 1.16 7.36 86.41 0.64 1.80 16 10 C 0.20 10.00 1.08 -10.89 -0.01 9.99 16 11 O -0.57 -30.63 13.45 -148.98 -2.00 -32.63 16 12 C -0.64 -34.84 8.56 25.60 0.22 -34.62 16 13 H 0.05 2.97 7.85 -2.91 -0.02 2.94 16 14 C -0.01 -0.43 5.26 84.65 0.45 0.02 16 15 N -0.92 -52.41 12.80 21.45 0.27 -52.13 16 16 Si 1.11 48.14 29.93 68.60 2.05 50.19 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 20 C 0.00 0.17 5.65 86.41 0.49 0.65 16 21 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 22 H 0.08 1.54 8.13 -2.39 -0.02 1.52 16 23 H 0.06 1.55 7.26 -2.39 -0.02 1.54 16 24 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 25 H 0.19 3.39 8.06 -2.91 -0.02 3.36 16 26 H 0.11 3.15 7.33 -2.39 -0.02 3.13 16 27 H 0.04 1.39 7.69 -2.39 -0.02 1.38 16 28 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.08 3.19 7.75 -2.39 -0.02 3.17 16 30 H 0.37 19.71 6.95 -74.06 -0.52 19.20 16 31 H 0.26 15.02 5.52 -92.71 -0.51 14.51 16 32 H 0.05 2.54 7.73 -2.39 -0.02 2.52 16 33 H 0.05 2.52 7.79 -2.39 -0.02 2.50 16 Total: -1.00 -62.22 287.99 -2.01 -64.23 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.86 Total: 31.27 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.84 Total: -36.21 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -5.45 Total: -77.08 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -2.00 Total: -32.63 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.05 Total: 50.19 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -1.30 Total: 0.24 kcal Total: -62.22 -2.01 -64.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225601107.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.654 kcal (2) G-P(sol) polarization free energy of solvation -62.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds