Wall clock time and date at job start Sun Mar 29 2020 23:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99918 * 2 1 4 4 H 1.48508 * 109.47167 * 270.00084 * 3 2 1 5 5 H 1.48500 * 109.47105 * 29.99908 * 3 2 1 6 6 H 1.48493 * 109.47296 * 149.99819 * 3 2 1 7 7 C 1.37874 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99719 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00036 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46810 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46705 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99596 * 180.02562 * 11 10 9 13 13 O 1.21606 * 120.00473 * 359.97438 * 12 11 10 14 14 C 1.47394 * 119.99784 * 179.97438 * 12 11 10 15 15 C 1.40222 * 120.21163 * 269.99671 * 14 12 11 16 16 O 1.35652 * 120.13891 * 0.27641 * 15 14 12 17 17 C 1.38595 * 119.72594 * 180.02562 * 15 14 12 18 18 C 1.38176 * 120.15635 * 0.02562 * 17 15 14 19 19 C 1.38369 * 120.43421 * 359.97438 * 18 17 15 20 20 C 1.38172 * 120.27378 * 0.02562 * 19 18 17 21 21 F 1.35093 * 120.08641 * 179.97438 * 20 19 18 22 22 H 0.97003 * 120.00026 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47012 * 60.00475 * 9 7 2 24 24 H 1.08995 * 109.47847 * 300.00367 * 9 7 2 25 25 H 1.08997 * 109.47106 * 60.00944 * 10 9 7 26 26 H 1.09000 * 109.47408 * 300.00075 * 10 9 7 27 27 H 0.96999 * 120.00426 * 359.97438 * 11 10 9 28 28 H 0.96710 * 114.00445 * 269.72578 * 16 15 14 29 29 H 1.07999 * 119.92166 * 180.02562 * 17 15 14 30 30 H 1.07994 * 119.78255 * 180.02562 * 18 17 15 31 31 H 1.08004 * 119.86629 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1939 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 7 5.4865 -2.6364 -0.0009 12 6 6.1604 -3.8036 -0.0014 13 8 5.5525 -4.8568 -0.0013 14 6 7.6344 -3.8035 -0.0019 15 6 8.3395 -3.8034 -1.2139 16 8 7.6681 -3.7977 -2.3925 17 6 9.7254 -3.8039 -1.2026 18 6 10.4098 -3.8051 -0.0023 19 6 9.7206 -3.8052 1.1975 20 6 8.3389 -3.8047 1.2072 21 9 7.6698 -3.8054 2.3808 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6803 0.8889 24 1 3.8746 -0.6799 -0.8910 25 1 3.6580 -3.1504 -0.8908 26 1 3.6585 -3.1501 0.8892 27 1 5.9716 -1.7963 -0.0014 28 1 7.4733 -4.6794 -2.7387 29 1 10.2717 -3.8034 -2.1343 30 1 11.4898 -3.8050 -0.0005 31 1 10.2648 -3.8065 2.1304 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228866845.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:54 Heat of formation + Delta-G solvation = -104.353225 kcal Electronic energy + Delta-G solvation = -17896.151985 eV Core-core repulsion = 14671.167429 eV Total energy + Delta-G solvation = -3224.984556 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.14816 -40.34496 -38.62940 -36.86942 -35.01085 -32.83185 -31.52522 -30.15831 -29.80703 -25.41828 -23.63439 -22.97654 -20.85235 -20.54127 -18.96151 -17.68873 -17.17454 -16.91617 -16.65039 -15.96619 -15.49262 -15.15392 -14.84896 -14.66974 -14.17228 -14.06391 -13.55722 -13.11550 -12.63294 -12.58272 -12.33256 -11.98438 -11.49263 -11.25421 -11.17073 -10.41096 -10.36463 -9.96506 -9.67048 -9.31737 -9.23134 -9.02025 -8.65756 -8.56254 -6.10107 -4.10236 0.59076 0.72735 2.69552 2.98896 3.26875 3.34459 3.36188 3.44109 3.63881 4.09130 4.39159 4.45819 4.66464 4.71905 4.87385 5.22965 5.25759 5.52711 5.64904 5.78733 5.87365 6.09034 6.19552 6.32722 6.55240 6.67501 7.12066 7.23512 7.28248 7.66689 7.79624 8.38551 8.46812 8.93897 9.50069 11.02893 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.029980 B = 0.004788 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.727954 B = 5846.003854 C = 5881.629632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.129 3.871 11 N -0.708 5.708 12 C 0.562 3.438 13 O -0.536 6.536 14 C -0.186 4.186 15 C 0.172 3.828 16 O -0.487 6.487 17 C -0.159 4.159 18 C -0.063 4.063 19 C -0.166 4.166 20 C 0.149 3.851 21 F -0.125 7.125 22 H 0.265 0.735 23 H 0.022 0.978 24 H 0.019 0.981 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.398 0.602 28 H 0.402 0.598 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.674 -6.380 -1.186 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.007 3.993 11 N -0.357 5.357 12 C 0.346 3.654 13 O -0.414 6.414 14 C -0.191 4.191 15 C 0.126 3.874 16 O -0.298 6.298 17 C -0.178 4.178 18 C -0.081 4.081 19 C -0.185 4.185 20 C 0.128 3.872 21 F -0.103 7.103 22 H 0.075 0.925 23 H 0.041 0.959 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.232 0.768 28 H 0.260 0.740 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 23.011 -6.405 -1.085 23.910 hybrid contribution 0.384 0.859 0.133 0.950 sum 23.395 -5.546 -0.952 24.062 Atomic orbital electron populations 1.69903 1.06279 1.27057 1.50426 1.24984 0.94755 0.99121 0.94327 0.86761 0.80294 0.83552 0.78553 1.20170 1.21232 1.19082 1.20902 0.88547 0.94934 1.51707 0.90576 1.19804 0.98058 0.91181 0.96965 1.21598 0.75388 1.00445 1.01836 1.46298 1.09330 1.07540 1.72503 1.17737 0.85696 0.84806 0.77160 1.90810 1.69236 1.31203 1.50150 1.20539 0.95461 1.09863 0.93205 1.18146 0.89517 0.95841 0.83939 1.84747 1.76679 1.34276 1.34130 1.21444 0.92823 1.03920 0.99581 1.20976 1.00486 0.95819 0.90790 1.21120 0.91626 1.05367 1.00418 1.17491 0.89874 0.99665 0.80127 1.91575 1.80725 1.93245 1.44749 0.92540 0.95938 0.96289 0.91632 0.91674 0.76807 0.73996 0.84084 0.84113 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.21 16 8 H 0.08 2.34 7.99 -52.48 -0.42 1.92 16 9 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16 10 C 0.13 2.75 5.61 -4.04 -0.02 2.73 16 11 N -0.71 -12.85 5.55 -61.39 -0.34 -13.19 16 12 C 0.56 10.14 6.43 -12.53 -0.08 10.05 16 13 O -0.54 -11.47 17.11 5.27 0.09 -11.38 16 14 C -0.19 -2.63 5.64 -104.79 -0.59 -3.22 16 15 C 0.17 1.97 6.72 -38.70 -0.26 1.71 16 16 O -0.49 -5.52 12.95 -18.66 -0.24 -5.76 16 17 C -0.16 -1.32 9.97 -39.47 -0.39 -1.71 16 18 C -0.06 -0.45 10.02 -39.56 -0.40 -0.84 16 19 C -0.17 -1.49 10.00 -39.56 -0.40 -1.88 16 20 C 0.15 1.89 7.29 -38.97 -0.28 1.61 16 21 F -0.12 -1.83 16.83 2.25 0.04 -1.79 16 22 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.02 0.52 7.20 -51.93 -0.37 0.15 16 24 H 0.02 0.43 7.57 -51.93 -0.39 0.04 16 25 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 26 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.40 6.36 8.46 -40.82 -0.35 6.01 16 28 H 0.40 2.97 9.06 45.56 0.41 3.39 16 29 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 31 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 LS Contribution 284.64 15.07 4.29 4.29 Total: -1.00 -34.58 284.64 -5.43 -40.01 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -2.40 Total: 3.38 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.97 Total: -5.46 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.43 Total: -40.01 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.15 Total: -17.15 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -34.58 -5.43 -40.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228866845.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.340 kcal (2) G-P(sol) polarization free energy of solvation -34.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds