Wall clock time and date at job start Mon Mar 30 2020 00:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 119.99945 * 2 1 3 5 5 C 1.36936 * 119.99910 * 275.00466 * 4 2 1 6 6 H 1.08005 * 120.00209 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00133 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99867 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00173 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47027 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46970 * 119.99929 * 9 7 5 12 12 H 1.48491 * 109.47076 * 239.99581 * 9 7 5 13 13 C 1.50697 * 109.47239 * 239.99664 * 2 1 3 14 14 C 1.38227 * 120.00116 * 279.72970 * 13 2 1 15 15 C 1.38235 * 119.99756 * 179.80850 * 14 13 2 16 16 C 1.38240 * 120.00213 * 0.42062 * 15 14 13 17 17 S 1.76201 * 120.00041 * 179.78789 * 16 15 14 18 18 C 1.81401 * 103.00060 * 270.01981 * 17 16 15 19 19 O 1.42104 * 103.00131 * 23.87572 * 17 16 15 20 20 C 1.38227 * 119.99733 * 359.81139 * 16 15 14 21 21 C 1.38237 * 119.99426 * 100.00170 * 13 2 1 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 24 24 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 25 25 H 0.96997 * 120.00110 * 94.99637 * 4 2 1 26 26 H 0.96997 * 120.00144 * 180.02562 * 8 7 5 27 27 H 1.08002 * 120.00298 * 359.97438 * 14 13 2 28 28 H 1.08008 * 120.00168 * 180.20741 * 15 14 13 29 29 H 1.09001 * 109.46787 * 60.00149 * 18 17 16 30 30 H 1.08998 * 109.47054 * 179.97438 * 18 17 16 31 31 H 1.08997 * 109.47120 * 300.00259 * 18 17 16 32 32 H 1.07995 * 119.99996 * 179.97438 * 20 16 15 33 33 H 1.07996 * 120.00567 * 359.97438 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8925 1.0406 2.4242 7 6 2.6122 -0.6617 3.5091 8 7 2.9253 -1.9387 3.4500 9 14 2.7912 0.2704 5.1181 10 1 2.3760 1.6824 4.9209 11 1 1.9309 -0.3582 6.1525 12 1 4.2082 0.2275 5.5599 13 6 2.0324 -0.7105 -1.2304 14 6 2.0721 -2.0918 -1.2631 15 6 2.5292 -2.7435 -2.3933 16 6 2.9548 -2.0137 -3.4875 17 16 3.5427 -2.8443 -4.9259 18 6 5.3199 -3.0112 -4.6030 19 8 2.9228 -4.1197 -4.8343 20 6 2.9196 -0.6323 -3.4529 21 6 2.4588 0.0194 -2.3242 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 2.2490 -1.6317 1.1527 26 1 3.2486 -2.3960 4.2420 27 1 1.7434 -2.6619 -0.4067 28 1 2.5571 -3.8229 -2.4201 29 1 5.4709 -3.5918 -3.6929 30 1 5.7952 -3.5204 -5.4414 31 1 5.7614 -2.0222 -4.4805 32 1 3.2525 -0.0621 -4.3075 33 1 2.4316 1.0987 -2.2971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271788651.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:01 Heat of formation + Delta-G solvation = -4.016692 kcal Electronic energy + Delta-G solvation = -16061.105839 eV Core-core repulsion = 13406.685378 eV Total energy + Delta-G solvation = -2654.420461 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.12546 -35.71761 -35.42919 -32.38658 -30.72512 -29.87921 -28.83243 -28.11741 -24.24874 -23.03225 -22.25766 -19.92167 -18.07159 -17.36694 -16.46253 -15.34403 -15.07350 -14.81237 -14.35874 -14.08675 -13.71263 -13.36494 -13.18957 -13.02132 -12.96750 -12.51426 -12.09168 -12.01680 -11.81200 -11.32733 -11.00985 -10.89062 -10.72822 -10.46759 -10.16394 -9.97355 -9.71957 -9.05641 -8.73948 -8.66865 -8.29655 -7.04658 -5.82450 -3.11881 1.12196 1.66762 1.97819 2.72229 3.39898 3.45199 3.47808 3.81045 4.05924 4.54430 5.02726 5.10338 5.17198 5.21437 5.28637 5.50639 5.63557 5.69858 5.85306 5.89436 5.96350 6.15249 6.24917 6.30144 6.43852 6.48307 6.57419 6.68184 6.90873 7.09759 7.23897 7.64949 8.35383 9.46791 10.01800 10.36890 11.40283 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.034556 B = 0.004753 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.075781 B = 5889.245639 C = 6219.681870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.201 3.799 3 H 0.059 0.941 4 N -0.722 5.722 5 C -0.241 4.241 6 H 0.073 0.927 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.291 1.291 13 C -0.027 4.027 14 C -0.120 4.120 15 C -0.052 4.052 16 C -0.475 4.475 17 S 1.327 4.673 18 C -0.499 4.499 19 O -0.864 6.864 20 C -0.048 4.048 21 C -0.138 4.138 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.039 0.961 25 H 0.385 0.615 26 H 0.256 0.744 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.131 0.869 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 3.884 -19.059 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.091 3.909 3 H 0.077 0.923 4 N -0.364 5.364 5 C -0.372 4.372 6 H 0.091 0.909 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.205 1.205 11 H -0.218 1.218 12 H -0.218 1.218 13 C -0.029 4.029 14 C -0.139 4.139 15 C -0.071 4.071 16 C -0.573 4.573 17 S 1.525 4.475 18 C -0.655 4.655 19 O -0.859 6.859 20 C -0.067 4.067 21 C -0.157 4.157 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.058 0.942 25 H 0.220 0.780 26 H 0.065 0.935 27 H 0.146 0.854 28 H 0.139 0.861 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.091 3.671 -19.686 20.055 hybrid contribution 0.667 -0.969 3.140 3.353 sum 1.758 2.702 -16.546 16.857 Atomic orbital electron populations 1.22425 0.98031 1.01267 1.00297 1.19322 0.92338 0.95080 0.84167 0.92326 1.42548 1.78219 1.10750 1.04926 1.19295 1.36752 0.94058 0.87074 0.90910 1.24764 1.01910 0.95994 0.98187 1.69674 1.50682 1.08745 1.28928 0.86096 0.77339 0.78796 0.83832 1.20459 1.21810 1.21832 1.20695 0.92690 0.94033 0.95445 1.21173 1.00142 0.94617 0.98004 1.21047 0.94305 0.99653 0.92119 1.27332 1.14236 1.02191 1.13539 1.69136 0.83886 0.95498 0.98948 1.27770 1.22004 1.08060 1.07673 1.93091 1.68985 1.41340 1.82529 1.20694 0.96249 0.92149 0.97633 1.21132 1.01171 0.99921 0.93518 0.93308 0.92210 0.94180 0.77985 0.93451 0.85367 0.86075 0.89973 0.88034 0.87184 0.85145 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.47 37.16 0.35 -2.57 16 2 C 0.20 4.03 3.09 -69.08 -0.21 3.81 16 3 H 0.06 1.16 7.94 -51.93 -0.41 0.74 16 4 N -0.72 -18.19 5.07 -54.55 -0.28 -18.47 16 5 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 6 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 9 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 C -0.03 -0.49 4.96 -104.63 -0.52 -1.01 16 14 C -0.12 -2.23 9.06 -39.59 -0.36 -2.59 16 15 C -0.05 -0.89 9.44 -39.58 -0.37 -1.26 16 16 C -0.48 -6.39 5.61 -39.58 -0.22 -6.61 16 17 S 1.33 13.03 14.19 -107.50 -1.53 11.50 16 18 C -0.50 -4.53 10.70 101.05 1.08 -3.45 16 19 O -0.86 -14.33 16.90 -35.23 -0.60 -14.93 16 20 C -0.05 -0.56 9.75 -39.58 -0.39 -0.95 16 21 C -0.14 -1.98 9.67 -39.58 -0.38 -2.36 16 22 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.38 10.32 6.05 -40.82 -0.25 10.07 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.13 2.56 6.90 -52.49 -0.36 2.20 16 28 H 0.12 2.14 7.46 -52.48 -0.39 1.75 16 29 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.13 1.51 8.04 -52.49 -0.42 1.08 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -36.37 296.71 -7.83 -44.20 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -4.34 Total: 7.79 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -1.27 Total: -24.25 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.45 Total: -46.11 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.60 Total: -14.93 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 13.03 SS G_CDS: -1.53 Total: 11.50 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -36.37 -7.83 -44.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271788651.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.185 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds