Wall clock time and date at job start Mon Mar 30 2020 00:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47408 * 2 1 4 4 N 1.46499 * 109.47377 * 239.99599 * 2 1 3 5 5 C 1.36941 * 119.99959 * 84.99777 * 4 2 1 6 6 H 1.07997 * 119.99942 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31612 * 119.99891 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99823 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46881 * 90.00045 * 9 7 5 11 11 H 1.48498 * 109.47027 * 209.99737 * 9 7 5 12 12 H 1.48497 * 109.47329 * 329.99929 * 9 7 5 13 13 C 1.50706 * 109.47163 * 119.99715 * 2 1 3 14 14 C 1.38228 * 119.99983 * 80.21409 * 13 2 1 15 15 C 1.38238 * 120.00110 * 180.21781 * 14 13 2 16 16 C 1.38234 * 119.99675 * 359.52133 * 15 14 13 17 17 S 1.76200 * 120.00103 * 180.26081 * 16 15 14 18 18 C 1.81396 * 103.00365 * 90.00095 * 17 16 15 19 19 O 1.42106 * 102.99851 * 336.14865 * 17 16 15 20 20 C 1.38235 * 120.00220 * 0.28720 * 16 15 14 21 21 C 1.38234 * 119.99892 * 259.99629 * 13 2 1 22 22 H 1.08997 * 109.47560 * 60.00135 * 1 2 3 23 23 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47119 * 300.00248 * 1 2 3 25 25 H 0.97002 * 120.00040 * 265.00513 * 4 2 1 26 26 H 0.97001 * 120.00134 * 180.02562 * 8 7 5 27 27 H 1.08004 * 120.00281 * 0.02562 * 14 13 2 28 28 H 1.08002 * 120.00519 * 179.80752 * 15 14 13 29 29 H 1.09010 * 109.46847 * 59.99618 * 18 17 16 30 30 H 1.08995 * 109.47541 * 179.97438 * 18 17 16 31 31 H 1.09001 * 109.47082 * 300.00530 * 18 17 16 32 32 H 1.07996 * 120.00471 * 179.97438 * 20 16 15 33 33 H 1.08001 * 120.00324 * 0.02562 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8926 1.0403 -2.4242 7 6 2.6114 -0.6622 -3.5092 8 7 2.9235 -1.9394 -3.4503 9 14 2.7890 0.2695 -5.1185 10 1 4.1513 0.8546 -5.2039 11 1 2.5783 -0.6621 -6.2556 12 1 1.7789 1.3565 -5.1753 13 6 2.0323 -0.7104 1.2305 14 6 2.0709 -2.0917 1.2638 15 6 2.5274 -2.7434 2.3942 16 6 2.9547 -2.0135 3.4876 17 16 3.5431 -2.8440 4.9259 18 6 5.3200 -3.0122 4.6019 19 8 2.9223 -4.1191 4.8352 20 6 2.9199 -0.6320 3.4529 21 6 2.4588 0.0195 2.3243 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 2.2490 -1.6319 -1.1525 26 1 3.2469 -2.3967 -4.2422 27 1 1.7414 -2.6620 0.4078 28 1 2.5547 -3.8227 2.4214 29 1 5.7620 -2.0234 4.4787 30 1 5.7958 -3.5206 5.4405 31 1 5.4699 -3.5931 3.6918 32 1 3.2533 -0.0617 4.3072 33 1 2.4316 1.0989 2.2971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271788653.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:05 Heat of formation + Delta-G solvation = -3.942525 kcal Electronic energy + Delta-G solvation = -16061.037471 eV Core-core repulsion = 13406.620227 eV Total energy + Delta-G solvation = -2654.417245 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.12454 -35.71663 -35.42726 -32.38566 -30.72466 -29.87813 -28.83180 -28.11595 -24.24598 -23.03059 -22.25633 -19.92021 -18.07063 -17.36513 -16.46160 -15.34202 -15.07223 -14.81204 -14.35963 -14.08344 -13.71298 -13.36589 -13.18963 -13.01829 -12.96651 -12.50977 -12.09025 -12.01674 -11.81093 -11.32673 -11.00842 -10.87310 -10.72819 -10.46712 -10.18509 -9.98319 -9.71381 -9.04968 -8.73855 -8.66795 -8.29580 -7.04576 -5.82117 -3.11588 1.12266 1.66831 1.97882 2.72289 3.40320 3.45213 3.47270 3.81093 4.05997 4.54647 5.02786 5.10474 5.17186 5.21417 5.28706 5.50872 5.63658 5.69933 5.85404 5.89457 5.96447 6.15353 6.25074 6.30268 6.44002 6.48373 6.57540 6.68280 6.91062 7.09887 7.23976 7.64652 8.35700 9.47025 10.02023 10.37137 11.40542 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.034561 B = 0.004753 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.975738 B = 5889.592234 C = 6219.932201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.201 3.799 3 H 0.059 0.941 4 N -0.722 5.722 5 C -0.242 4.242 6 H 0.072 0.928 7 C -0.012 4.012 8 N -0.932 5.932 9 Si 0.909 3.091 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.281 1.281 13 C -0.027 4.027 14 C -0.120 4.120 15 C -0.052 4.052 16 C -0.475 4.475 17 S 1.327 4.673 18 C -0.499 4.499 19 O -0.864 6.864 20 C -0.048 4.048 21 C -0.138 4.138 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.039 0.961 25 H 0.385 0.615 26 H 0.256 0.744 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 3.856 19.026 19.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.091 3.909 3 H 0.077 0.923 4 N -0.364 5.364 5 C -0.373 4.373 6 H 0.090 0.910 7 C -0.208 4.208 8 N -0.580 5.580 9 Si 0.740 3.260 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.207 1.207 13 C -0.029 4.029 14 C -0.139 4.139 15 C -0.071 4.071 16 C -0.573 4.573 17 S 1.525 4.475 18 C -0.655 4.655 19 O -0.859 6.859 20 C -0.067 4.067 21 C -0.157 4.157 22 H 0.078 0.922 23 H 0.067 0.933 24 H 0.058 0.942 25 H 0.220 0.780 26 H 0.066 0.934 27 H 0.146 0.854 28 H 0.139 0.861 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.149 0.851 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.084 3.633 19.647 20.010 hybrid contribution 0.671 -0.954 -3.133 3.344 sum 1.756 2.679 16.514 16.822 Atomic orbital electron populations 1.22423 0.98035 1.01267 1.00295 1.19320 0.92336 0.95076 0.84167 0.92335 1.42541 1.78226 1.10740 1.04925 1.19246 1.36911 0.94017 0.87081 0.90973 1.24759 1.01909 0.95976 0.98174 1.69662 1.50600 1.08703 1.29068 0.86165 0.77822 0.78590 0.83463 1.21669 1.21738 1.20658 1.20697 0.92687 0.94033 0.95446 1.21174 1.00150 0.94618 0.97997 1.21045 0.94303 0.99652 0.92121 1.27331 1.14228 1.02189 1.13553 1.69136 0.83881 0.95514 0.98938 1.27771 1.21996 1.08069 1.07673 1.93092 1.68958 1.41372 1.82525 1.20695 0.96252 0.92149 0.97631 1.21130 1.01173 0.99922 0.93518 0.92211 0.93309 0.94184 0.77983 0.93401 0.85368 0.86074 0.87188 0.88033 0.89968 0.85144 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.47 37.15 0.35 -2.57 16 2 C 0.20 4.03 3.09 -69.08 -0.21 3.82 16 3 H 0.06 1.16 7.94 -51.93 -0.41 0.74 16 4 N -0.72 -18.20 5.07 -54.55 -0.28 -18.47 16 5 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 8 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 9 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C -0.03 -0.49 4.96 -104.62 -0.52 -1.01 16 14 C -0.12 -2.23 9.06 -39.59 -0.36 -2.59 16 15 C -0.05 -0.89 9.44 -39.58 -0.37 -1.26 16 16 C -0.48 -6.39 5.61 -39.58 -0.22 -6.61 16 17 S 1.33 13.03 14.19 -107.50 -1.53 11.51 16 18 C -0.50 -4.54 10.70 101.05 1.08 -3.46 16 19 O -0.86 -14.33 16.90 -35.23 -0.60 -14.93 16 20 C -0.05 -0.56 9.75 -39.58 -0.39 -0.95 16 21 C -0.14 -1.98 9.67 -39.58 -0.38 -2.36 16 22 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.39 10.32 6.05 -40.82 -0.25 10.08 16 26 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.13 2.56 6.90 -52.48 -0.36 2.20 16 28 H 0.12 2.14 7.45 -52.49 -0.39 1.75 16 29 H 0.11 0.78 8.14 -51.92 -0.42 0.35 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 32 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.13 1.51 8.04 -52.49 -0.42 1.08 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -36.34 296.71 -7.83 -44.17 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -4.34 Total: 7.83 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -1.27 Total: -24.26 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.45 Total: -46.10 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.60 Total: -14.93 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 13.03 SS G_CDS: -1.53 Total: 11.51 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -36.34 -7.83 -44.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271788653.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.230 kcal (2) G-P(sol) polarization free energy of solvation -36.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds