Wall clock time and date at job start Mon Mar 30 2020 00:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 109.47408 * 2 1 4 4 N 1.46499 * 109.47377 * 239.99599 * 2 1 3 5 5 C 1.36941 * 119.99959 * 84.99777 * 4 2 1 6 6 H 1.07997 * 119.99942 * 0.02562 * 5 4 2 7 7 C 1.38813 * 120.00038 * 180.02562 * 5 4 2 8 8 N 1.31612 * 119.99891 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99823 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46881 * 90.00045 * 9 7 5 11 11 H 1.48498 * 109.47027 * 209.99737 * 9 7 5 12 12 H 1.48497 * 109.47329 * 329.99929 * 9 7 5 13 13 C 1.50706 * 109.47163 * 119.99715 * 2 1 3 14 14 C 1.38228 * 119.99983 * 80.21409 * 13 2 1 15 15 C 1.38238 * 120.00110 * 180.21781 * 14 13 2 16 16 C 1.38234 * 119.99675 * 359.52133 * 15 14 13 17 17 S 1.76200 * 120.00103 * 180.26081 * 16 15 14 18 18 C 1.81396 * 103.00365 * 90.00095 * 17 16 15 19 19 O 1.42106 * 102.99851 * 336.14865 * 17 16 15 20 20 C 1.38235 * 120.00220 * 0.28720 * 16 15 14 21 21 C 1.38234 * 119.99892 * 259.99629 * 13 2 1 22 22 H 1.08997 * 109.47560 * 60.00135 * 1 2 3 23 23 H 1.09005 * 109.47049 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47119 * 300.00248 * 1 2 3 25 25 H 0.97002 * 120.00040 * 265.00513 * 4 2 1 26 26 H 0.97001 * 120.00134 * 180.02562 * 8 7 5 27 27 H 1.08004 * 120.00281 * 0.02562 * 14 13 2 28 28 H 1.08002 * 120.00519 * 179.80752 * 15 14 13 29 29 H 1.09010 * 109.46847 * 59.99618 * 18 17 16 30 30 H 1.08995 * 109.47541 * 179.97438 * 18 17 16 31 31 H 1.09001 * 109.47082 * 300.00530 * 18 17 16 32 32 H 1.07996 * 120.00471 * 179.97438 * 20 16 15 33 33 H 1.08001 * 120.00324 * 0.02562 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0076 -2.3758 6 1 1.8926 1.0403 -2.4242 7 6 2.6114 -0.6622 -3.5092 8 7 2.9235 -1.9394 -3.4503 9 14 2.7890 0.2695 -5.1185 10 1 4.1513 0.8546 -5.2039 11 1 2.5783 -0.6621 -6.2556 12 1 1.7789 1.3565 -5.1753 13 6 2.0323 -0.7104 1.2305 14 6 2.0709 -2.0917 1.2638 15 6 2.5274 -2.7434 2.3942 16 6 2.9547 -2.0135 3.4876 17 16 3.5431 -2.8440 4.9259 18 6 5.3200 -3.0122 4.6019 19 8 2.9223 -4.1191 4.8352 20 6 2.9199 -0.6320 3.4529 21 6 2.4588 0.0195 2.3243 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 2.2490 -1.6319 -1.1525 26 1 3.2469 -2.3967 -4.2422 27 1 1.7414 -2.6620 0.4078 28 1 2.5547 -3.8227 2.4214 29 1 5.7620 -2.0234 4.4787 30 1 5.7958 -3.5206 5.4405 31 1 5.4699 -3.5931 3.6918 32 1 3.2533 -0.0617 4.3072 33 1 2.4316 1.0989 2.2971 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271788653.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:17:04 Heat of formation + Delta-G solvation = -30.457414 kcal Electronic energy + Delta-G solvation = -16062.187243 eV Core-core repulsion = 13406.620227 eV Total energy + Delta-G solvation = -2655.567017 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39112 -37.14264 -36.82423 -34.27311 -31.94905 -31.45240 -29.87496 -29.48507 -26.13904 -24.44638 -23.56957 -21.37668 -19.50959 -18.91607 -17.62027 -16.90537 -16.41985 -16.03879 -15.75548 -15.48956 -15.11522 -14.67896 -14.52538 -14.34738 -14.18829 -13.73106 -13.54814 -13.30148 -13.06912 -12.85758 -12.77316 -12.54247 -12.21459 -12.14827 -11.80635 -11.68005 -11.20966 -11.05733 -9.97546 -9.86449 -9.31916 -9.09757 -7.98884 -5.28796 -0.00538 0.46825 1.05113 1.44411 1.46734 1.55190 1.83170 2.52320 2.71773 3.04819 3.35973 3.81533 3.87573 3.99127 4.10646 4.34305 4.42782 4.50409 4.53959 4.66597 4.69054 4.91584 4.95888 5.03008 5.12772 5.19963 5.31258 5.33857 5.44835 5.46404 5.74032 6.05809 6.22542 7.28045 8.02066 8.25778 9.25275 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.034561 B = 0.004753 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.975738 B = 5889.592234 C = 6219.932201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.195 3.805 3 H 0.068 0.932 4 N -0.739 5.739 5 C -0.239 4.239 6 H 0.083 0.917 7 C -0.080 4.080 8 N -0.976 5.976 9 Si 0.977 3.023 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.265 1.265 13 C -0.051 4.051 14 C -0.146 4.146 15 C -0.078 4.078 16 C -0.479 4.479 17 S 1.417 4.583 18 C -0.501 4.501 19 O -0.932 6.932 20 C -0.026 4.026 21 C -0.135 4.135 22 H 0.046 0.954 23 H 0.031 0.969 24 H 0.076 0.924 25 H 0.371 0.629 26 H 0.250 0.750 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.142 0.858 30 H 0.125 0.875 31 H 0.051 0.949 32 H 0.201 0.799 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.541 6.838 21.805 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.088 3.912 3 H 0.086 0.914 4 N -0.380 5.380 5 C -0.371 4.371 6 H 0.101 0.899 7 C -0.271 4.271 8 N -0.627 5.627 9 Si 0.806 3.194 10 H -0.213 1.213 11 H -0.226 1.226 12 H -0.189 1.189 13 C -0.052 4.052 14 C -0.166 4.166 15 C -0.098 4.098 16 C -0.574 4.574 17 S 1.614 4.386 18 C -0.658 4.658 19 O -0.928 6.928 20 C -0.044 4.044 21 C -0.154 4.154 22 H 0.065 0.935 23 H 0.050 0.950 24 H 0.094 0.906 25 H 0.203 0.797 26 H 0.059 0.941 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.160 0.840 30 H 0.143 0.857 31 H 0.071 0.929 32 H 0.218 0.782 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.005 6.668 22.449 23.504 hybrid contribution 0.426 -1.871 -3.794 4.252 sum 2.432 4.797 18.655 19.415 Atomic orbital electron populations 1.22269 0.96764 1.00539 1.01386 1.19537 0.93116 0.95118 0.83468 0.91410 1.42796 1.78531 1.10386 1.06242 1.19702 1.34890 0.94457 0.88007 0.89905 1.25630 1.02878 0.96845 1.01791 1.69849 1.52780 1.10551 1.29531 0.85082 0.78055 0.77397 0.78897 1.21263 1.22574 1.18945 1.20561 0.94997 0.93481 0.96194 1.20964 1.02469 0.95394 0.97768 1.20983 0.96381 0.98985 0.93408 1.27940 1.12719 1.03595 1.13158 1.68274 0.82920 0.92199 0.95202 1.27802 1.20945 1.09897 1.07175 1.92966 1.71708 1.44956 1.83153 1.21452 0.93035 0.91361 0.98567 1.21572 0.99602 1.01477 0.92796 0.93463 0.94974 0.90557 0.79654 0.94139 0.89002 0.88320 0.83966 0.85684 0.92944 0.78234 0.82418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 9.47 71.98 0.68 -4.78 16 2 C 0.20 7.85 3.09 44.25 0.14 7.99 16 3 H 0.07 2.57 7.94 -2.39 -0.02 2.56 16 4 N -0.74 -38.55 5.07 -326.51 -1.66 -40.21 16 5 C -0.24 -13.42 9.93 84.03 0.83 -12.58 16 6 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 7 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 8 N -0.98 -61.93 13.06 21.65 0.28 -61.64 16 9 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 12 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 13 C -0.05 -1.83 4.96 -19.87 -0.10 -1.92 16 14 C -0.15 -5.79 9.06 22.27 0.20 -5.59 16 15 C -0.08 -2.78 9.44 22.27 0.21 -2.57 16 16 C -0.48 -11.78 5.61 22.27 0.12 -11.66 16 17 S 1.42 23.74 14.19 -56.49 -0.80 22.94 16 18 C -0.50 -7.36 10.70 113.37 1.21 -6.15 16 19 O -0.93 -30.45 16.90 -148.98 -2.52 -32.96 16 20 C -0.03 -0.47 9.75 22.27 0.22 -0.26 16 21 C -0.14 -3.38 9.67 22.27 0.22 -3.17 16 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 24 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.37 21.23 6.05 -92.71 -0.56 20.66 16 26 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.09 4.16 6.90 -2.91 -0.02 4.14 16 28 H 0.10 3.82 7.45 -2.91 -0.02 3.79 16 29 H 0.14 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.20 0.95 8.06 -2.91 -0.02 0.92 16 33 H 0.16 2.92 8.04 -2.91 -0.02 2.90 16 Total: -1.00 -84.90 296.71 2.08 -82.82 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.54 Total: 25.22 kcal Atomic # 6 Polarization: -49.10 SS G_CDS: 4.20 Total: -44.89 kcal Atomic # 7 Polarization: -100.48 SS G_CDS: -1.37 Total: -101.85 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -2.52 Total: -32.96 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Atomic # 16 Polarization: 23.74 SS G_CDS: -0.80 Total: 22.94 kcal Total: -84.90 2.08 -82.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271788653.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.363 kcal (2) G-P(sol) polarization free energy of solvation -84.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds