Wall clock time and date at job start Sun Mar 29 2020 23:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00129 * 2 1 4 4 H 1.48506 * 109.47201 * 240.00160 * 3 2 1 5 5 H 1.48505 * 109.46885 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47321 * 120.00055 * 3 2 1 7 7 C 1.37885 * 120.00174 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.50691 * 119.99973 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47363 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47082 * 179.97438 * 10 9 7 12 12 C 1.34783 * 119.99536 * 179.97438 * 11 10 9 13 13 O 1.21276 * 119.99950 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.99432 * 179.97438 * 12 11 10 15 15 C 1.53005 * 109.46526 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46909 * 180.02562 * 15 14 12 17 17 C 1.38423 * 122.53613 * 270.00211 * 16 15 14 18 18 C 1.33390 * 114.91977 * 180.02562 * 17 16 15 19 19 S 1.75887 * 109.59565 * 359.75483 * 18 17 16 20 20 C 1.33391 * 122.54338 * 90.02238 * 16 15 14 21 21 H 0.97000 * 120.00711 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47288 * 59.99487 * 9 7 2 23 23 H 1.09007 * 109.46964 * 299.99873 * 9 7 2 24 24 H 1.09001 * 109.46674 * 59.99810 * 10 9 7 25 25 H 1.08994 * 109.46989 * 299.99937 * 10 9 7 26 26 H 0.96995 * 120.00320 * 0.02562 * 11 10 9 27 27 H 1.08994 * 109.46984 * 60.00404 * 14 12 11 28 28 H 1.08994 * 109.47395 * 299.99944 * 14 12 11 29 29 H 1.08994 * 109.47301 * 60.00425 * 15 14 12 30 30 H 1.09003 * 109.46866 * 299.99861 * 15 14 12 31 31 H 1.08001 * 122.53963 * 0.04211 * 17 16 15 32 32 H 1.07998 * 125.20164 * 180.02562 * 18 17 16 33 33 H 1.08002 * 125.19887 * 359.95301 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0980 0.0007 13 8 3.3995 -6.0979 0.0003 14 6 1.4332 -7.4031 0.0020 15 6 2.4275 -8.5660 0.0018 16 6 1.6740 -9.8711 0.0024 17 6 1.3022 -10.5156 1.1697 18 6 0.6416 -11.6609 0.9934 19 16 0.4528 -11.9742 -0.7270 20 6 1.3152 -10.4930 -1.1218 21 1 -0.4851 0.8400 -0.0004 22 1 0.6247 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8904 24 1 2.8719 -3.6042 0.8905 25 1 2.8719 -3.6043 -0.8894 26 1 0.5428 -4.9308 0.0011 27 1 0.8056 -7.4611 -0.8873 28 1 0.8075 -7.4606 0.8926 29 1 3.0548 -8.5078 0.8913 30 1 3.0535 -8.5087 -0.8887 31 1 1.5296 -10.1209 2.1489 32 1 0.2746 -12.2963 1.7859 33 1 1.5191 -10.1388 -2.1215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273043482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:15:03 Heat of formation + Delta-G solvation = -48.392231 kcal Electronic energy + Delta-G solvation = -15255.039049 eV Core-core repulsion = 12598.694320 eV Total energy + Delta-G solvation = -2656.344729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.75657 -39.13128 -36.59964 -34.80551 -33.81051 -31.60299 -29.96962 -27.24291 -25.74228 -23.50907 -22.71614 -21.28621 -19.58435 -18.66642 -18.43196 -17.80389 -16.79284 -16.65538 -16.43548 -16.01083 -15.32510 -14.77265 -14.31559 -14.19391 -14.06725 -13.81506 -13.25814 -13.22045 -12.90748 -12.88695 -12.74666 -12.53030 -12.22229 -11.93179 -11.66426 -11.60371 -11.47703 -10.80855 -10.60436 -9.98522 -9.67472 -9.24447 -8.24494 -6.35193 0.13239 0.81349 1.11785 1.41560 1.43798 1.51848 1.70780 1.77068 2.32609 2.50052 3.10102 3.78715 4.01070 4.15313 4.26391 4.33495 4.49485 4.52310 4.65188 4.68978 4.74780 4.86138 4.90983 5.15389 5.21473 5.32054 5.50376 5.54838 5.58311 5.63136 5.78876 6.16287 6.67218 6.78136 7.33113 7.34196 8.87133 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.063680 B = 0.002890 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.589721 B = 9685.059260 C = 9857.931276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.720 5.720 12 C 0.503 3.497 13 O -0.593 6.593 14 C -0.121 4.121 15 C -0.039 4.039 16 C -0.107 4.107 17 C -0.144 4.144 18 C -0.212 4.212 19 S 0.094 5.906 20 C -0.219 4.219 21 H 0.266 0.734 22 H 0.008 0.992 23 H 0.009 0.991 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.411 0.589 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.150 0.850 32 H 0.185 0.815 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.796 -23.401 0.258 23.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.588 4.588 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.371 5.371 12 C 0.292 3.708 13 O -0.474 6.474 14 C -0.161 4.161 15 C -0.079 4.079 16 C -0.119 4.119 17 C -0.174 4.174 18 C -0.347 4.347 19 S 0.358 5.642 20 C -0.355 4.355 21 H 0.075 0.925 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.247 0.753 27 H 0.131 0.869 28 H 0.132 0.868 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.168 0.832 32 H 0.202 0.798 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.789 -24.460 -0.596 24.532 hybrid contribution 0.546 2.233 0.784 2.429 sum -1.243 -22.227 0.188 22.263 Atomic orbital electron populations 1.70042 1.07539 1.28107 1.50905 1.25872 0.95801 1.03097 0.94372 0.85507 0.78326 0.78139 0.79138 1.19341 1.20525 1.19338 1.21463 0.93586 0.92053 1.51711 0.92369 1.19125 0.94219 0.91774 0.96323 1.21194 0.95042 0.82593 0.99629 1.46211 1.11162 1.05679 1.74064 1.21450 0.87976 0.86616 0.74796 1.90653 1.16158 1.88511 1.52109 1.21634 0.98983 0.88924 1.06524 1.19931 0.95815 0.88641 1.03551 1.18974 1.02035 0.98232 0.92678 1.20319 1.01308 0.95916 0.99840 1.25907 1.07031 1.02308 0.99423 1.84234 1.55754 1.22994 1.01213 1.25727 1.06905 0.99854 1.02991 0.92496 0.97341 0.97308 0.93728 0.93749 0.75296 0.86888 0.86760 0.91055 0.91270 0.83192 0.79812 0.80943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 13.29 21.45 0.28 -54.08 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -30.87 9.11 25.60 0.23 -30.63 16 8 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.16 5.09 29.84 0.15 1.31 16 10 C 0.14 6.01 5.61 86.38 0.48 6.50 16 11 N -0.72 -24.43 5.56 -463.06 -2.57 -27.00 16 12 C 0.50 16.10 7.83 87.66 0.69 16.78 16 13 O -0.59 -23.97 15.98 -3.02 -0.05 -24.02 16 14 C -0.12 -2.55 5.68 29.85 0.17 -2.38 16 15 C -0.04 -0.84 4.76 29.85 0.14 -0.69 16 16 C -0.11 -1.98 5.06 -20.92 -0.11 -2.09 16 17 C -0.14 -2.39 9.98 21.22 0.21 -2.18 16 18 C -0.21 -3.04 11.23 66.72 0.75 -2.29 16 19 S 0.09 1.41 23.34 -56.49 -1.32 0.09 16 20 C -0.22 -3.75 10.98 66.72 0.73 -3.02 16 21 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 22 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 23 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 24 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.41 11.75 8.47 -92.71 -0.79 10.97 16 27 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 1.66 8.09 -2.39 -0.02 1.64 16 30 H 0.07 1.62 8.08 -2.39 -0.02 1.60 16 31 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 32 H 0.18 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -67.14 303.51 2.61 -64.53 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.32 Total: 12.66 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 3.92 Total: -17.82 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -2.29 Total: -81.08 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.09 kcal Total: -67.14 2.61 -64.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273043482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.138 kcal (2) G-P(sol) polarization free energy of solvation -67.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds