Wall clock time and date at job start Sun Mar 29 2020 22:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34894 * 116.99518 * 2 1 4 4 O 1.21620 * 120.00265 * 359.97438 * 3 2 1 5 5 C 1.46473 * 120.00071 * 179.97438 * 3 2 1 6 6 C 1.36636 * 125.99927 * 179.97438 * 5 3 2 7 7 C 1.40312 * 106.70086 * 179.74211 * 6 5 3 8 8 C 1.35169 * 107.12865 * 0.26747 * 7 6 5 9 9 C 1.50699 * 125.60762 * 180.02562 * 8 7 6 10 10 N 1.46492 * 109.47211 * 89.99882 * 9 8 7 11 11 C 1.34775 * 120.00134 * 179.97438 * 10 9 8 12 12 O 1.21693 * 119.99743 * 0.02562 * 11 10 9 13 13 C 1.46376 * 120.00234 * 180.02562 * 11 10 9 14 14 H 1.07999 * 119.99968 * 0.02562 * 13 11 10 15 15 C 1.40050 * 119.99874 * 180.02562 * 13 11 10 16 16 N 1.30676 * 120.00288 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99816 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.47275 * 90.00162 * 17 15 13 19 19 H 1.48501 * 109.47394 * 209.99928 * 17 15 13 20 20 H 1.48499 * 109.47342 * 330.00356 * 17 15 13 21 21 O 1.33913 * 108.77835 * 359.97438 * 8 7 6 22 22 H 1.09002 * 109.47194 * 60.00109 * 1 2 3 23 23 H 1.09006 * 109.46660 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47341 * 299.99902 * 1 2 3 25 25 H 1.08002 * 126.65103 * 0.02562 * 6 5 3 26 26 H 1.08003 * 126.43101 * 180.30345 * 7 6 5 27 27 H 1.09000 * 109.46509 * 209.99834 * 9 8 7 28 28 H 1.08998 * 109.46947 * 329.99470 * 9 8 7 29 29 H 0.96998 * 120.00504 * 359.97438 * 10 9 8 30 30 H 0.96995 * 120.00052 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0644 1.2020 0.0000 4 8 1.4020 2.2219 -0.0005 5 6 3.5271 1.2788 0.0006 6 6 4.2712 2.4248 0.0001 7 6 5.6179 2.0311 0.0070 8 6 5.6376 0.6796 0.0053 9 6 6.8755 -0.1798 0.0114 10 7 7.2684 -0.4602 1.3945 11 6 8.3551 -1.2167 1.6462 12 8 9.0102 -1.6664 0.7245 13 6 8.7474 -1.4973 3.0283 14 1 8.1658 -1.0986 3.8463 15 6 9.8769 -2.2830 3.2897 16 7 10.5810 -2.7650 2.3000 17 14 10.3780 -2.6405 5.0534 18 1 9.7123 -3.8854 5.5145 19 1 11.8514 -2.8116 5.1245 20 1 9.9685 -1.5089 5.9234 21 8 4.3762 0.2301 -0.0017 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 3.8955 3.4373 -0.0003 26 1 6.4773 2.6853 0.0132 27 1 6.6694 -1.1174 -0.5049 28 1 7.6845 0.3447 -0.4969 29 1 6.7466 -0.1015 2.1293 30 1 11.3634 -3.3088 2.4811 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274700705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:46 Heat of formation + Delta-G solvation = -130.877885 kcal Electronic energy + Delta-G solvation = -17560.203652 eV Core-core repulsion = 14321.696111 eV Total energy + Delta-G solvation = -3238.507541 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.92858 -41.35840 -39.41186 -37.73719 -35.65781 -34.54215 -34.18113 -31.87722 -29.48913 -28.38296 -26.82430 -23.95002 -22.83628 -21.86684 -21.54850 -19.73286 -19.32530 -18.20953 -17.98464 -17.51992 -17.06296 -16.64982 -15.93015 -15.78766 -15.39309 -14.94626 -14.37809 -14.31131 -14.24323 -14.07861 -13.76727 -13.16922 -13.14089 -13.01117 -12.70412 -12.61689 -12.11497 -12.00597 -11.94127 -11.20434 -10.92888 -10.15470 -9.70971 -9.61760 -8.29933 -6.86816 -0.40701 1.02971 1.15188 1.43214 1.43645 1.59421 1.70074 1.84075 2.26652 2.45604 3.12749 3.39409 3.58257 3.76678 3.78163 4.21506 4.30517 4.32846 4.38379 4.50674 4.65890 4.68112 4.80698 5.04054 5.22463 5.32608 5.72438 5.83577 6.05151 6.21853 6.42967 6.86346 7.43797 8.43558 8.64819 Molecular weight = 253.08amu Principal moments of inertia in cm(-1) A = 0.034135 B = 0.004008 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.071753 B = 6983.810097 C = 7287.538104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.559 3.441 4 O -0.505 6.505 5 C -0.093 4.093 6 C -0.086 4.086 7 C -0.193 4.193 8 C 0.024 3.976 9 C 0.208 3.792 10 N -0.752 5.752 11 C 0.541 3.459 12 O -0.626 6.626 13 C -0.571 4.571 14 H 0.088 0.912 15 C 0.030 3.970 16 N -0.819 5.819 17 Si 0.998 3.002 18 H -0.263 1.263 19 H -0.272 1.272 20 H -0.249 1.249 21 O -0.162 6.162 22 H 0.073 0.927 23 H 0.132 0.868 24 H 0.071 0.929 25 H 0.191 0.809 26 H 0.187 0.813 27 H 0.057 0.943 28 H 0.095 0.905 29 H 0.396 0.604 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.740 8.465 -1.566 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.405 3.595 4 O -0.396 6.396 5 C -0.143 4.143 6 C -0.105 4.105 7 C -0.213 4.213 8 C -0.029 4.029 9 C 0.084 3.916 10 N -0.409 5.409 11 C 0.346 3.654 12 O -0.513 6.513 13 C -0.607 4.607 14 H 0.106 0.894 15 C -0.185 4.185 16 N -0.448 5.448 17 Si 0.817 3.183 18 H -0.188 1.188 19 H -0.197 1.197 20 H -0.172 1.172 21 O -0.058 6.058 22 H 0.091 0.909 23 H 0.150 0.850 24 H 0.090 0.910 25 H 0.208 0.792 26 H 0.205 0.795 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.230 0.770 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.485 8.005 -2.337 17.587 hybrid contribution -0.093 -0.071 0.677 0.687 sum -15.578 7.934 -1.660 17.560 Atomic orbital electron populations 1.23720 0.73132 1.06228 1.03407 1.86691 1.26281 1.31246 1.83492 1.19159 0.85440 0.82253 0.72685 1.90915 1.64671 1.36256 1.47784 1.20983 0.88225 0.86746 1.18380 1.22314 0.91793 0.99332 0.97110 1.21996 0.98698 0.93423 1.07135 1.22971 0.83011 0.94805 1.02125 1.19377 0.88452 0.97002 0.86790 1.45892 1.31583 1.57618 1.05766 1.18577 0.78755 0.77340 0.90695 1.90573 1.56056 1.56773 1.47916 1.21406 1.13246 1.34707 0.91379 0.89398 1.26945 0.94800 0.92955 1.03809 1.70166 1.13888 1.25432 1.35327 0.85010 0.77737 0.79720 0.75789 1.18781 1.19716 1.17244 1.84110 1.15819 1.35492 1.70412 0.90862 0.84987 0.90990 0.79163 0.79532 0.92448 0.88734 0.77007 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.57 113.37 1.20 1.61 16 2 O -0.36 -8.87 10.58 -56.70 -0.60 -9.47 16 3 C 0.56 14.92 7.93 69.97 0.55 15.48 16 4 O -0.51 -14.14 16.66 19.44 0.32 -13.81 16 5 C -0.09 -2.58 7.18 24.04 0.17 -2.40 16 6 C -0.09 -1.98 10.62 22.40 0.24 -1.74 16 7 C -0.19 -4.65 10.77 22.07 0.24 -4.42 16 8 C 0.02 0.72 6.68 24.98 0.17 0.88 16 9 C 0.21 7.67 6.20 85.63 0.53 8.20 16 10 N -0.75 -32.81 5.54 -471.16 -2.61 -35.42 16 11 C 0.54 30.54 7.75 86.36 0.67 31.21 16 12 O -0.63 -40.67 15.02 -4.32 -0.06 -40.73 16 13 C -0.57 -31.64 9.54 24.83 0.24 -31.41 16 14 H 0.09 4.37 7.85 -2.91 -0.02 4.35 16 15 C 0.03 1.66 5.50 85.30 0.47 2.13 16 16 N -0.82 -49.07 11.83 21.84 0.26 -48.82 16 17 Si 1.00 40.04 29.56 68.60 2.03 42.07 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 20 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 21 O -0.16 -5.14 10.67 -4.89 -0.05 -5.20 16 22 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.13 1.23 8.14 -2.38 -0.02 1.21 16 24 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 26 H 0.19 3.57 8.06 -2.91 -0.02 3.55 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 29 H 0.40 15.30 8.44 -92.71 -0.78 14.52 16 30 H 0.28 14.94 8.29 -92.71 -0.77 14.17 16 Total: -1.00 -75.15 285.32 4.16 -70.99 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.40 Total: 20.84 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 4.47 Total: 19.55 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.35 Total: -84.24 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -0.39 Total: -69.21 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -75.15 4.16 -70.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274700705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.883 kcal (2) G-P(sol) polarization free energy of solvation -75.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds