Wall clock time and date at job start Sun Mar 29 2020 23:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35948 * 117.00035 * 2 1 4 4 C 1.38806 * 119.97887 * 0.02562 * 3 2 1 5 5 C 1.37996 * 120.05141 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.99697 * 180.02562 * 5 4 3 7 7 C 1.39139 * 120.00513 * 0.02562 * 5 4 3 8 8 N 1.39487 * 120.01420 * 180.02562 * 7 5 4 9 9 C 1.34781 * 119.99569 * 204.86329 * 8 7 5 10 10 O 1.21775 * 120.00342 * 5.52265 * 9 8 7 11 11 C 1.41747 * 119.99975 * 185.51926 * 9 8 7 12 12 H 1.08007 * 119.99670 * 5.01977 * 11 9 8 13 13 C 1.40129 * 120.00375 * 185.02361 * 11 9 8 14 14 N 1.30637 * 119.99950 * 354.97772 * 13 11 9 15 15 Si 1.86795 * 120.00210 * 174.97948 * 13 11 9 16 16 H 1.48500 * 109.47222 * 94.99917 * 15 13 11 17 17 H 1.48506 * 109.47360 * 214.99860 * 15 13 11 18 18 H 1.48497 * 109.47321 * 334.99618 * 15 13 11 19 19 C 1.39085 * 119.96434 * 359.97438 * 7 5 4 20 20 C 1.38136 * 119.94578 * 359.74701 * 19 7 5 21 21 F 1.35111 * 120.00506 * 180.27786 * 20 19 7 22 22 H 1.08999 * 109.47018 * 299.99932 * 1 2 3 23 23 H 1.09002 * 109.47025 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46939 * 59.99583 * 1 2 3 25 25 H 1.07996 * 119.97788 * 359.95648 * 4 3 2 26 26 H 1.08996 * 109.47206 * 90.00335 * 6 5 4 27 27 H 1.09000 * 109.47444 * 210.00385 * 6 5 4 28 28 H 1.09004 * 109.47343 * 330.00434 * 6 5 4 29 29 H 0.96996 * 120.00111 * 24.86690 * 8 7 5 30 30 H 0.96999 * 119.99979 * 179.97438 * 14 13 11 31 31 H 1.08001 * 120.02719 * 180.02562 * 19 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2898 2.3752 0.0005 5 6 1.9148 3.6055 0.0011 6 6 1.0924 4.8682 0.0022 7 6 3.3042 3.6802 0.0005 8 7 3.9361 4.9237 0.0016 9 6 5.1853 5.0452 -0.4896 10 8 5.7241 4.0936 -1.0253 11 6 5.8718 6.2807 -0.3827 12 1 5.4274 7.1000 0.1630 13 6 7.1271 6.4392 -0.9849 14 7 7.7087 5.4208 -1.5605 15 14 7.9690 8.1065 -0.9648 16 1 8.9064 8.1739 0.1850 17 1 8.7232 8.2957 -2.2300 18 1 6.9468 9.1756 -0.8333 19 6 4.0625 2.5143 0.0000 20 6 3.4351 1.2836 0.0053 21 9 4.1707 0.1503 0.0104 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 0.2114 2.3178 0.0002 26 1 0.8946 5.1721 1.0301 27 1 1.6396 5.6588 -0.5114 28 1 0.1480 4.6874 -0.5113 29 1 3.4765 5.7010 0.3559 30 1 8.5775 5.5306 -1.9778 31 1 5.1410 2.5711 0.0000 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274720111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:16 Heat of formation + Delta-G solvation = -119.295538 kcal Electronic energy + Delta-G solvation = -18318.834193 eV Core-core repulsion = 15093.201690 eV Total energy + Delta-G solvation = -3225.632503 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.81389 -41.32470 -40.01278 -38.14047 -35.10426 -34.49180 -33.19815 -30.55291 -28.71682 -28.50171 -26.80102 -23.99761 -22.68786 -21.70605 -19.73013 -18.98446 -18.23549 -17.94460 -17.27280 -17.06277 -16.28027 -16.00453 -15.91633 -15.53488 -15.24818 -14.88033 -14.62676 -14.25954 -14.19125 -13.36208 -13.13573 -12.98678 -12.87937 -12.77470 -12.69504 -12.54442 -12.15514 -12.01874 -11.95842 -11.01048 -10.55749 -9.94511 -9.60113 -8.44099 -8.40319 -7.02922 0.14836 0.35542 1.40055 1.40749 1.58242 2.19868 2.26597 2.33151 2.66600 2.86171 3.34495 3.62190 3.76533 3.99313 4.12187 4.41349 4.47264 4.57784 4.69349 4.79191 4.82368 4.88144 4.95795 5.09656 5.21056 5.29176 5.45286 5.62552 5.86431 6.14650 6.22885 6.46063 6.72134 7.36611 8.35311 8.54104 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.005543 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.792594 B = 5050.617710 C = 5713.147420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.057 3.943 4 C -0.142 4.142 5 C -0.105 4.105 6 C -0.106 4.106 7 C 0.160 3.840 8 N -0.682 5.682 9 C 0.525 3.475 10 O -0.613 6.613 11 C -0.562 4.562 12 H 0.096 0.904 13 C 0.031 3.969 14 N -0.802 5.802 15 Si 1.003 2.997 16 H -0.262 1.262 17 H -0.273 1.273 18 H -0.243 1.243 19 C -0.166 4.166 20 C 0.054 3.946 21 F -0.152 7.152 22 H 0.073 0.927 23 H 0.119 0.881 24 H 0.069 0.931 25 H 0.181 0.819 26 H 0.092 0.908 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.411 0.589 30 H 0.279 0.721 31 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.002 -0.299 4.162 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.010 3.990 4 C -0.161 4.161 5 C -0.109 4.109 6 C -0.162 4.162 7 C 0.061 3.939 8 N -0.326 5.326 9 C 0.335 3.665 10 O -0.501 6.501 11 C -0.596 4.596 12 H 0.114 0.886 13 C -0.187 4.187 14 N -0.430 5.430 15 Si 0.821 3.179 16 H -0.187 1.187 17 H -0.198 1.198 18 H -0.166 1.166 19 C -0.188 4.188 20 C 0.034 3.966 21 F -0.131 7.131 22 H 0.091 0.909 23 H 0.137 0.863 24 H 0.087 0.913 25 H 0.198 0.802 26 H 0.111 0.889 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.248 0.752 30 H 0.089 0.911 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.314 -1.192 3.699 15.799 hybrid contribution 0.875 0.410 -0.033 0.967 sum -14.439 -0.782 3.665 14.917 Atomic orbital electron populations 1.23428 0.75800 1.05753 1.02780 1.86072 1.24082 1.25501 1.89495 1.18839 0.89412 0.86777 1.03938 1.21064 1.01235 0.88809 1.04957 1.19899 0.90441 0.97605 1.02950 1.20770 0.99286 0.92240 1.03913 1.17703 0.91695 0.85871 0.98620 1.43659 1.17318 1.07818 1.63779 1.17503 0.80016 0.90209 0.78818 1.90592 1.67785 1.42282 1.49461 1.20593 1.03955 0.99016 1.36067 0.88638 1.27070 0.97246 1.02602 0.91805 1.70177 1.13927 1.33758 1.25144 0.84926 0.78403 0.75967 0.78561 1.18707 1.19770 1.16588 1.21175 1.01590 0.90566 1.05508 1.17055 0.87165 0.81797 1.10590 1.91391 1.77590 1.49427 1.94692 0.90882 0.86308 0.91276 0.80163 0.88906 0.92070 0.88490 0.75247 0.91059 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -10.25 10.36 -92.97 -0.96 -11.21 16 3 C 0.06 1.98 6.70 22.61 0.15 2.13 16 4 C -0.14 -3.93 8.68 22.35 0.19 -3.73 16 5 C -0.11 -3.29 5.90 -19.71 -0.12 -3.41 16 6 C -0.11 -2.27 9.44 71.23 0.67 -1.60 16 7 C 0.16 6.83 6.41 38.34 0.25 7.08 16 8 N -0.68 -30.57 4.95 -311.35 -1.54 -32.11 16 9 C 0.52 29.83 7.37 85.11 0.63 30.45 16 10 O -0.61 -40.50 12.04 -4.59 -0.06 -40.56 16 11 C -0.56 -30.39 9.31 23.60 0.22 -30.17 16 12 H 0.10 4.51 7.85 -2.91 -0.02 4.48 16 13 C 0.03 1.66 5.49 85.33 0.47 2.13 16 14 N -0.80 -47.76 11.75 21.85 0.26 -47.50 16 15 Si 1.00 38.84 29.56 68.60 2.03 40.87 16 16 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 17 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 18 H -0.24 -8.57 7.11 99.48 0.71 -7.87 16 19 C -0.17 -8.09 8.68 22.45 0.19 -7.90 16 20 C 0.05 2.37 7.31 22.45 0.16 2.53 16 21 F -0.15 -6.96 17.11 44.97 0.77 -6.19 16 22 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 23 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 25 H 0.18 3.16 6.29 -2.91 -0.02 3.14 16 26 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.46 6.99 -2.39 -0.02 1.44 16 28 H 0.10 1.51 8.08 -2.38 -0.02 1.49 16 29 H 0.41 15.00 7.35 -92.71 -0.68 14.32 16 30 H 0.28 15.00 8.29 -92.71 -0.77 14.23 16 31 H 0.12 7.12 5.78 -2.91 -0.02 7.11 16 Total: -1.00 -78.15 274.43 4.93 -73.22 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: 0.50 Total: 24.57 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 3.93 Total: -1.09 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -1.28 Total: -79.61 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -1.02 Total: -51.77 kcal Atomic # 9 Polarization: -6.96 SS G_CDS: 0.77 Total: -6.19 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -78.15 4.93 -73.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274720111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.076 kcal (2) G-P(sol) polarization free energy of solvation -78.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds