Wall clock time and date at job start Sun Mar 29 2020 23:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86798 * 119.99575 * 2 1 4 4 H 1.48500 * 109.47280 * 274.98726 * 3 2 1 5 5 H 1.48498 * 109.47242 * 34.98818 * 3 2 1 6 6 H 1.48506 * 109.46945 * 154.98472 * 3 2 1 7 7 C 1.40040 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00056 * 186.15022 * 7 2 1 9 9 C 1.46376 * 120.00110 * 6.14280 * 7 2 1 10 10 O 1.21680 * 120.00097 * 353.94671 * 9 7 2 11 11 N 1.34776 * 119.99835 * 174.21835 * 9 7 2 12 12 C 1.46497 * 119.99869 * 179.72770 * 11 9 7 13 13 H 1.09001 * 109.47632 * 34.99813 * 12 11 9 14 14 C 1.53004 * 109.47146 * 274.99715 * 12 11 9 15 15 O 1.42895 * 109.47183 * 295.00166 * 14 12 11 16 16 C 1.50705 * 109.47276 * 155.00017 * 12 11 9 17 17 C 1.38244 * 119.97380 * 39.72709 * 16 12 11 18 18 C 1.38200 * 120.02413 * 179.73136 * 17 16 12 19 19 C 1.38458 * 119.97560 * 0.51941 * 18 17 16 20 20 F 1.35095 * 120.02884 * 179.72937 * 19 18 17 21 21 C 1.38457 * 119.94879 * 359.75230 * 19 18 17 22 22 C 1.38209 * 119.97415 * 0.02562 * 21 19 18 23 23 H 0.97003 * 120.00448 * 359.97438 * 1 2 3 24 24 H 0.96998 * 120.00266 * 359.72331 * 11 9 7 25 25 H 1.09001 * 109.46565 * 55.00549 * 14 12 11 26 26 H 1.08999 * 109.46798 * 174.99890 * 14 12 11 27 27 H 0.96697 * 114.00132 * 179.97438 * 15 14 12 28 28 H 1.08002 * 119.98779 * 359.97151 * 17 16 12 29 29 H 1.08000 * 120.01058 * 180.29845 * 18 17 16 30 30 H 1.07998 * 120.01966 * 179.97438 * 21 19 18 31 31 H 1.07997 * 119.98982 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3827 2.1074 -1.3948 5 1 1.4947 2.6199 0.8028 6 1 3.5869 1.4121 0.5921 7 6 2.0069 -1.2128 -0.0005 8 1 3.0823 -1.2155 0.0997 9 6 1.2814 -2.4767 -0.1368 10 8 0.0646 -2.4827 -0.1387 11 7 1.9612 -3.6346 -0.2545 12 6 1.2350 -4.9002 -0.3848 13 1 0.3244 -4.7390 -0.9618 14 6 0.8715 -5.4252 1.0056 15 8 2.0662 -5.7466 1.7207 16 6 2.1051 -5.9082 -1.0906 17 6 3.4562 -5.9741 -0.8056 18 6 4.2540 -6.9018 -1.4482 19 6 3.7017 -7.7582 -2.3855 20 9 4.4816 -8.6617 -3.0183 21 6 2.3494 -7.6875 -2.6743 22 6 1.5526 -6.7620 -2.0271 23 1 -0.4851 0.8400 0.0004 24 1 2.9311 -3.6299 -0.2530 25 1 0.3172 -4.6601 1.5493 26 1 0.2555 -6.3190 0.9069 27 1 1.9113 -6.0859 2.6129 28 1 3.8878 -5.3030 -0.0777 29 1 5.3086 -6.9564 -1.2218 30 1 1.9174 -8.3546 -3.4055 31 1 0.4977 -6.7069 -2.2518 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274814006.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:23 Heat of formation + Delta-G solvation = -111.075964 kcal Electronic energy + Delta-G solvation = -18157.316959 eV Core-core repulsion = 14932.040883 eV Total energy + Delta-G solvation = -3225.276076 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.80682 -39.41777 -37.37235 -36.10547 -33.56352 -32.38121 -31.08084 -30.22984 -27.78782 -25.95192 -23.13392 -22.95387 -20.91550 -19.29972 -17.89347 -17.32944 -16.87510 -16.05542 -15.64645 -15.50453 -15.22891 -14.70325 -14.06593 -13.99802 -13.56718 -13.36378 -13.27685 -12.83124 -12.37126 -12.14178 -12.04169 -11.39913 -11.12200 -11.01982 -10.80258 -10.77231 -10.46470 -10.22961 -9.62542 -8.96148 -8.87469 -8.42498 -7.65473 -7.57336 -6.22248 -4.65815 1.27618 1.38424 3.13082 3.20615 3.24024 3.72339 4.09502 4.36080 4.53120 4.62272 4.81939 4.91647 4.96152 5.00041 5.44514 5.51434 5.62544 5.77639 5.96033 5.96800 6.04542 6.22234 6.22892 6.31343 6.45470 6.77088 7.02401 7.42063 7.89161 7.93864 8.06866 8.31629 9.00708 9.48857 10.56068 10.74187 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.029820 B = 0.005221 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.754097 B = 5361.611348 C = 5690.050853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.583 6.583 11 N -0.753 5.753 12 C 0.196 3.804 13 H 0.098 0.902 14 C 0.070 3.930 15 O -0.566 6.566 16 C -0.080 4.080 17 C -0.059 4.059 18 C -0.156 4.156 19 C 0.085 3.915 20 F -0.147 7.147 21 C -0.157 4.157 22 C -0.087 4.087 23 H 0.268 0.732 24 H 0.383 0.617 25 H 0.059 0.941 26 H 0.039 0.961 27 H 0.369 0.631 28 H 0.137 0.863 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -12.472 -1.019 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.467 6.467 11 N -0.408 5.408 12 C 0.089 3.911 13 H 0.116 0.884 14 C -0.009 4.009 15 O -0.370 6.370 16 C -0.081 4.081 17 C -0.077 4.077 18 C -0.175 4.175 19 C 0.066 3.934 20 F -0.126 7.126 21 C -0.176 4.176 22 C -0.106 4.106 23 H 0.079 0.921 24 H 0.215 0.785 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.215 0.785 28 H 0.155 0.845 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.404 -12.173 -1.607 13.044 hybrid contribution 0.748 0.389 0.392 0.929 sum 5.152 -11.784 -1.214 12.919 Atomic orbital electron populations 1.70020 1.07066 1.27275 1.35280 1.25688 0.94590 1.00273 0.92556 0.86369 0.80279 0.81484 0.78695 1.19797 1.20468 1.18864 1.20874 0.94165 0.89520 1.53537 0.91380 1.18232 0.87140 0.82324 0.76215 1.90587 1.14028 1.86448 1.55609 1.46189 1.08704 1.04529 1.81354 1.19513 0.95275 0.83776 0.92554 0.88431 1.22685 0.86481 0.97868 0.93876 1.86472 1.32240 1.87438 1.30838 1.20167 0.94698 0.97042 0.96226 1.20885 0.92909 0.96538 0.97356 1.21122 1.01018 0.97285 0.98099 1.17707 0.89067 0.90904 0.95744 1.91461 1.74700 1.65576 1.80847 1.21021 0.92144 1.01605 1.02826 1.20920 1.00080 0.94446 0.95156 0.92126 0.78454 0.92282 0.94316 0.78519 0.84534 0.85074 0.85116 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.66 11.85 55.55 0.66 -22.00 16 2 C 0.09 2.44 5.49 -17.37 -0.10 2.35 16 3 Si 0.91 19.98 29.56 -169.99 -5.03 14.95 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.24 16 7 C -0.54 -15.18 9.53 -35.63 -0.34 -15.52 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.56 15.40 7.71 -12.99 -0.10 15.30 16 10 O -0.58 -18.15 14.71 5.21 0.08 -18.07 16 11 N -0.75 -16.49 4.97 -56.34 -0.28 -16.76 16 12 C 0.20 3.63 2.61 -69.08 -0.18 3.45 16 13 H 0.10 1.96 7.44 -51.93 -0.39 1.58 16 14 C 0.07 1.18 6.84 37.16 0.25 1.43 16 15 O -0.57 -8.55 12.06 -35.23 -0.42 -8.97 16 16 C -0.08 -1.26 4.83 -104.61 -0.51 -1.77 16 17 C -0.06 -0.87 8.06 -39.59 -0.32 -1.18 16 18 C -0.16 -2.10 10.03 -39.51 -0.40 -2.50 16 19 C 0.08 1.16 7.30 -39.42 -0.29 0.87 16 20 F -0.15 -2.01 17.27 2.25 0.04 -1.97 16 21 C -0.16 -2.02 10.03 -39.51 -0.40 -2.41 16 22 C -0.09 -1.20 9.67 -39.59 -0.38 -1.58 16 23 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 24 H 0.38 7.69 6.83 -40.82 -0.28 7.41 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.37 3.94 9.12 45.56 0.42 4.35 16 28 H 0.14 2.02 6.67 -52.49 -0.35 1.67 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.13 1.57 8.04 -52.49 -0.42 1.15 16 LS Contribution 280.46 15.07 4.23 4.23 Total: -1.00 -33.57 280.46 -5.74 -39.31 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -2.26 Total: 10.86 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.75 Total: -1.57 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.38 Total: -38.76 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.35 Total: -27.05 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.57 -5.74 -39.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274814006.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.769 kcal (2) G-P(sol) polarization free energy of solvation -33.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds