Wall clock time and date at job start Sun Mar 29 2020 23:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86800 * 120.00497 * 2 1 4 4 H 1.48500 * 109.47575 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46628 * 299.99779 * 3 2 1 6 6 H 1.48504 * 109.47268 * 59.99296 * 3 2 1 7 7 C 1.40052 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.46371 * 120.00180 * 0.02562 * 7 2 1 10 10 O 1.21692 * 119.99845 * 359.97438 * 9 7 2 11 11 N 1.34780 * 120.00311 * 179.97438 * 9 7 2 12 12 C 1.46492 * 119.99929 * 179.97438 * 11 9 7 13 13 C 1.53005 * 109.46922 * 179.97438 * 12 11 9 14 14 H 1.09006 * 109.47078 * 60.00363 * 13 12 11 15 15 O 1.42897 * 109.47059 * 300.00352 * 13 12 11 16 16 C 1.50703 * 109.47127 * 180.02562 * 13 12 11 17 17 C 1.38265 * 119.98460 * 265.00137 * 16 13 12 18 18 C 1.38230 * 120.05232 * 179.97438 * 17 16 13 19 19 C 1.38221 * 120.01866 * 359.97438 * 18 17 16 20 20 C 1.38437 * 119.97771 * 359.97438 * 19 18 17 21 21 F 1.35096 * 120.02231 * 180.02562 * 20 19 18 22 22 C 1.38170 * 119.98887 * 84.97899 * 16 13 12 23 23 H 0.97002 * 119.99759 * 0.02562 * 1 2 3 24 24 H 0.97003 * 119.99790 * 359.97438 * 11 9 7 25 25 H 1.08997 * 109.47413 * 60.00402 * 12 11 9 26 26 H 1.08995 * 109.47579 * 299.99849 * 12 11 9 27 27 H 0.96699 * 113.99711 * 299.99150 * 15 13 12 28 28 H 1.07998 * 119.98228 * 359.70181 * 17 16 13 29 29 H 1.07993 * 119.98797 * 179.97438 * 18 17 16 30 30 H 1.08010 * 120.00681 * 179.97438 * 19 18 17 31 31 H 1.08001 * 120.01158 * 0.04483 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 0.0006 5 1 1.8821 2.3963 -1.2126 6 1 1.8820 2.3965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2130 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6478 0.0005 12 6 1.2163 -4.9164 0.0011 13 6 2.2105 -6.0794 0.0003 14 1 2.8379 -6.0217 0.8899 15 8 3.0312 -6.0037 -1.1670 16 6 1.4570 -7.3845 0.0003 17 6 1.2023 -8.0354 1.1932 18 6 0.5108 -9.2323 1.1949 19 6 0.0726 -9.7794 0.0036 20 6 0.3261 -9.1280 -1.1914 21 9 -0.1022 -9.6616 -2.3562 22 6 1.0204 -7.9298 -1.1918 23 1 -0.4850 0.8401 -0.0004 24 1 2.9189 -3.6478 0.0002 25 1 0.5894 -4.9744 -0.8886 26 1 0.5900 -4.9740 0.8913 27 1 2.5385 -6.0491 -1.9978 28 1 1.5478 -7.6108 2.1242 29 1 0.3128 -9.7400 2.1272 30 1 -0.4673 -10.7148 0.0050 31 1 1.2198 -7.4214 -2.1235 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274992285.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:36 Heat of formation + Delta-G solvation = -115.474229 kcal Electronic energy + Delta-G solvation = -17712.068775 eV Core-core repulsion = 14486.601976 eV Total energy + Delta-G solvation = -3225.466799 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.01309 -39.72736 -37.57778 -36.45357 -33.11682 -32.27066 -31.55513 -30.71708 -28.06062 -25.99254 -23.50059 -22.76527 -21.29071 -19.74713 -17.99116 -17.37186 -16.68134 -16.32048 -15.92329 -15.70395 -15.34282 -14.98005 -14.32844 -14.18548 -13.94801 -13.42917 -13.34005 -12.78777 -12.61513 -12.23990 -12.04213 -11.61619 -11.35103 -11.18490 -11.01631 -10.90758 -10.48534 -10.22721 -10.04403 -9.13271 -8.86468 -8.81723 -7.63460 -7.53808 -6.19250 -4.64254 0.97533 1.03210 3.13339 3.21574 3.26318 3.38468 4.00786 4.11756 4.38433 4.44996 4.57663 4.58933 4.80224 4.96945 5.14567 5.20765 5.24914 5.37825 5.62901 5.77249 5.86738 5.92528 6.09365 6.20413 6.31139 6.45510 6.70852 7.43754 7.60459 7.93758 8.06898 8.32989 9.02530 9.52731 10.59275 10.77556 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.042865 B = 0.004064 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.061931 B = 6887.410390 C = 6920.102250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.553 3.447 10 O -0.583 6.583 11 N -0.762 5.762 12 C 0.109 3.891 13 C 0.136 3.864 14 H 0.115 0.885 15 O -0.550 6.550 16 C -0.077 4.077 17 C -0.119 4.119 18 C -0.089 4.089 19 C -0.158 4.158 20 C 0.100 3.900 21 F -0.141 7.141 22 C -0.144 4.144 23 H 0.268 0.732 24 H 0.385 0.615 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.375 0.625 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.423 -16.537 0.828 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.357 3.643 10 O -0.466 6.466 11 N -0.419 5.419 12 C -0.017 4.017 13 C 0.077 3.923 14 H 0.133 0.867 15 O -0.355 6.355 16 C -0.078 4.078 17 C -0.137 4.137 18 C -0.107 4.107 19 C -0.177 4.177 20 C 0.081 3.919 21 F -0.119 7.119 22 C -0.163 4.163 23 H 0.078 0.922 24 H 0.217 0.783 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.223 0.777 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.790 -16.405 1.221 16.685 hybrid contribution 0.224 0.563 -0.611 0.860 sum 3.014 -15.842 0.611 16.137 Atomic orbital electron populations 1.70035 1.07087 1.27158 1.35482 1.25718 0.94612 1.00332 0.92592 0.86311 0.80524 0.81694 0.78196 1.18728 1.20166 1.20176 1.20921 0.93674 0.89294 1.54201 0.91292 1.18262 0.87196 0.82440 0.76365 1.90602 1.14136 1.86854 1.54965 1.46051 1.08862 1.04203 1.82780 1.21485 0.93891 0.84584 1.01733 1.21181 0.91779 0.89406 0.89982 0.86715 1.86601 1.36878 1.96287 1.15780 1.20440 0.97474 0.96980 0.92895 1.21111 0.99379 0.95305 0.97911 1.21002 0.96723 0.95424 0.97547 1.21146 1.03467 1.01609 0.91490 1.17629 0.98900 0.93828 0.81547 1.91500 1.87949 1.85828 1.46655 1.20874 1.00368 0.95537 0.99545 0.92173 0.78263 0.92996 0.92269 0.77688 0.84909 0.84844 0.84838 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.16 11.83 55.55 0.66 -22.50 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 20.16 29.56 -169.99 -5.02 15.14 16 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.54 -15.43 9.54 -35.63 -0.34 -15.77 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.55 15.78 7.75 -12.99 -0.10 15.68 16 10 O -0.58 -18.95 15.02 5.20 0.08 -18.87 16 11 N -0.76 -16.88 5.44 -61.73 -0.34 -17.22 16 12 C 0.11 2.01 5.32 -4.04 -0.02 1.98 16 13 C 0.14 1.87 3.30 -27.88 -0.09 1.78 16 14 H 0.12 1.47 8.05 -51.93 -0.42 1.06 16 15 O -0.55 -7.64 12.88 -35.23 -0.45 -8.10 16 16 C -0.08 -0.95 5.00 -104.64 -0.52 -1.47 16 17 C -0.12 -1.28 9.68 -39.57 -0.38 -1.66 16 18 C -0.09 -0.84 10.04 -39.59 -0.40 -1.24 16 19 C -0.16 -1.62 10.03 -39.51 -0.40 -2.01 16 20 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 21 F -0.14 -1.77 17.27 2.25 0.04 -1.73 16 22 C -0.14 -1.76 9.31 -39.52 -0.37 -2.13 16 23 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 24 H 0.39 7.70 8.33 -40.82 -0.34 7.36 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.37 4.31 7.39 45.56 0.34 4.65 16 28 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.13 1.46 6.61 -52.49 -0.35 1.12 16 LS Contribution 283.06 15.07 4.27 4.27 Total: -1.00 -35.12 283.06 -6.21 -41.33 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -2.43 Total: 9.27 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -3.01 Total: -1.58 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.32 Total: -39.72 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.38 Total: -26.97 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -35.12 -6.21 -41.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274992285.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.141 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds