Wall clock time and date at job start Sun Mar 29 2020 23:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48504 * 109.46768 * 239.99761 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00038 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 C 1.52996 * 109.47059 * 179.72339 * 12 11 9 14 14 H 1.09008 * 109.47304 * 304.99667 * 13 12 11 15 15 O 1.42902 * 109.47328 * 64.99617 * 13 12 11 16 16 C 1.50700 * 109.47144 * 185.00065 * 13 12 11 17 17 C 1.38269 * 119.98590 * 279.72193 * 16 13 12 18 18 C 1.38221 * 120.05286 * 179.72872 * 17 16 13 19 19 C 1.38217 * 120.02201 * 0.54784 * 18 17 16 20 20 C 1.38444 * 119.97700 * 359.72696 * 19 18 17 21 21 F 1.35098 * 120.02210 * 180.02562 * 20 19 18 22 22 C 1.38169 * 119.99063 * 99.99850 * 16 13 12 23 23 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 25 25 H 1.09004 * 109.46963 * 299.72135 * 12 11 9 26 26 H 1.08994 * 109.47567 * 59.72287 * 12 11 9 27 27 H 0.96696 * 113.99765 * 60.00422 * 15 13 12 28 28 H 1.08005 * 119.96946 * 359.97438 * 17 16 13 29 29 H 1.08000 * 119.98871 * 180.27759 * 18 17 16 30 30 H 1.08007 * 120.01419 * 179.70455 * 19 18 17 31 31 H 1.08006 * 120.01507 * 0.02562 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0945 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0945 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 6 2.2108 -6.0793 -0.0112 14 1 2.8950 -5.9684 -0.8526 15 8 2.9533 -6.0772 1.2098 16 6 1.4615 -7.3803 -0.1413 17 6 0.8647 -7.9481 0.9692 18 6 0.1723 -9.1384 0.8504 19 6 0.0853 -9.7683 -0.3768 20 6 0.6872 -9.2036 -1.4884 21 9 0.6024 -9.8183 -2.6885 22 6 1.3758 -8.0082 -1.3691 23 1 -0.4849 0.8400 -0.0004 24 1 2.9191 -3.6476 0.0002 25 1 0.5900 -4.9784 0.8842 26 1 0.5899 -4.9699 -0.8957 27 1 2.4073 -6.1725 2.0022 28 1 0.9363 -7.4590 1.9295 29 1 -0.2973 -9.5787 1.7176 30 1 -0.4518 -10.7009 -0.4686 31 1 1.8462 -7.5670 -2.2355 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274992289.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:40 Heat of formation + Delta-G solvation = -115.655241 kcal Electronic energy + Delta-G solvation = -17676.598897 eV Core-core repulsion = 14451.124249 eV Total energy + Delta-G solvation = -3225.474648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.01607 -39.73386 -37.56428 -36.44556 -33.14115 -32.30168 -31.67027 -30.55920 -28.06886 -25.98521 -23.41599 -22.96606 -21.21695 -19.75235 -17.93920 -17.37494 -16.66157 -16.33388 -15.99855 -15.70682 -15.34062 -14.97791 -14.40870 -14.07138 -13.96025 -13.47711 -13.27226 -12.81730 -12.59536 -12.23226 -12.03355 -11.71998 -11.36163 -11.19335 -10.95963 -10.87895 -10.47505 -10.28381 -10.05231 -9.12850 -8.84740 -8.83297 -7.63982 -7.54134 -6.18915 -4.64328 0.96858 1.03267 3.16516 3.21175 3.23213 3.38266 3.99911 4.11335 4.36883 4.46892 4.58947 4.61060 4.80936 4.96062 5.08950 5.19503 5.27787 5.36943 5.63217 5.76748 5.86504 5.92955 6.09222 6.19409 6.30975 6.45338 6.70552 7.43521 7.60824 7.92949 8.06422 8.32222 9.02302 9.52272 10.59380 10.77522 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.041390 B = 0.004060 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.331895 B = 6894.687945 C = 7023.902480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.763 5.763 12 C 0.110 3.890 13 C 0.136 3.864 14 H 0.113 0.887 15 O -0.549 6.549 16 C -0.077 4.077 17 C -0.120 4.120 18 C -0.088 4.088 19 C -0.158 4.158 20 C 0.099 3.901 21 F -0.141 7.141 22 C -0.142 4.142 23 H 0.269 0.731 24 H 0.384 0.616 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.374 0.626 28 H 0.130 0.870 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 -16.463 0.986 16.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.419 5.419 12 C -0.016 4.016 13 C 0.076 3.924 14 H 0.131 0.869 15 O -0.354 6.354 16 C -0.078 4.078 17 C -0.138 4.138 18 C -0.106 4.106 19 C -0.177 4.177 20 C 0.079 3.921 21 F -0.119 7.119 22 C -0.161 4.161 23 H 0.079 0.921 24 H 0.217 0.783 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.223 0.777 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.441 -16.304 0.531 16.494 hybrid contribution 0.302 0.523 0.058 0.607 sum 2.742 -15.781 0.589 16.028 Atomic orbital electron populations 1.70011 1.07078 1.27382 1.35303 1.25711 0.94616 1.00300 0.92592 0.86421 0.79798 0.80970 0.79475 1.19276 1.20577 1.19252 1.20851 0.93610 0.89330 1.54387 0.91393 1.18240 0.87191 0.82417 0.76362 1.90601 1.14116 1.86849 1.54999 1.46059 1.08801 1.04256 1.82801 1.21488 0.93876 0.84543 1.01693 1.21159 0.93107 0.89483 0.88607 0.86911 1.86616 1.37370 1.96092 1.15358 1.20418 0.97476 0.96891 0.93001 1.21002 0.97906 0.96181 0.98746 1.20970 0.97783 0.94896 0.96912 1.21146 1.02424 1.01831 0.92259 1.17669 1.00422 0.93024 0.80949 1.91499 1.94694 1.82332 1.43423 1.21007 1.01487 0.94738 0.98884 0.92055 0.78342 0.92865 0.92358 0.77743 0.85244 0.84843 0.84830 0.84419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.14 11.83 55.55 0.66 -22.49 16 2 C 0.09 2.45 5.50 -17.36 -0.10 2.35 16 3 Si 0.91 20.16 29.56 -169.99 -5.02 15.14 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.54 -15.44 9.54 -35.63 -0.34 -15.78 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.55 15.78 7.75 -12.99 -0.10 15.68 16 10 O -0.58 -18.92 15.02 5.20 0.08 -18.84 16 11 N -0.76 -16.89 5.50 -61.72 -0.34 -17.23 16 12 C 0.11 2.02 5.29 -4.04 -0.02 2.00 16 13 C 0.14 1.88 3.24 -27.88 -0.09 1.79 16 14 H 0.11 1.50 8.00 -51.92 -0.42 1.09 16 15 O -0.55 -7.43 13.13 -35.23 -0.46 -7.90 16 16 C -0.08 -0.95 4.97 -104.64 -0.52 -1.47 16 17 C -0.12 -1.29 9.32 -39.58 -0.37 -1.66 16 18 C -0.09 -0.83 10.04 -39.60 -0.40 -1.23 16 19 C -0.16 -1.61 10.03 -39.51 -0.40 -2.00 16 20 C 0.10 1.18 7.30 -39.42 -0.29 0.89 16 21 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 22 C -0.14 -1.74 9.65 -39.52 -0.38 -2.12 16 23 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 24 H 0.38 7.67 8.45 -40.82 -0.35 7.32 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.37 3.99 7.49 45.56 0.34 4.33 16 28 H 0.13 1.14 6.77 -52.48 -0.36 0.79 16 29 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.14 1.53 8.04 -52.48 -0.42 1.11 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -35.10 283.56 -6.21 -41.31 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -2.43 Total: 9.01 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -3.00 Total: -1.56 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.32 Total: -39.72 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.38 Total: -26.74 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -35.10 -6.21 -41.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274992289.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.343 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds