Wall clock time and date at job start Sun Mar 29 2020 23:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00103 * 2 1 4 4 H 1.48496 * 109.47034 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47015 * 299.99642 * 3 2 1 6 6 H 1.48498 * 109.46904 * 59.99696 * 3 2 1 7 7 C 1.37884 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99741 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47358 * 179.97438 * 10 9 7 12 12 O 1.21305 * 119.99510 * 0.02562 * 11 10 9 13 13 N 1.34773 * 120.00146 * 179.97438 * 11 10 9 14 14 C 1.40228 * 119.99687 * 185.53316 * 13 11 10 15 15 C 1.38704 * 120.06765 * 24.81032 * 14 13 11 16 16 C 1.38195 * 120.00944 * 179.97438 * 15 14 13 17 17 C 1.38485 * 120.13845 * 0.02562 * 16 15 14 18 18 F 1.35095 * 119.93390 * 180.02562 * 17 16 15 19 19 C 1.38430 * 120.12684 * 359.97438 * 17 16 15 20 20 C 1.38543 * 119.99258 * 359.97438 * 19 17 16 21 21 O 1.35967 * 120.06868 * 180.30029 * 20 19 17 22 22 H 0.96996 * 119.99868 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47541 * 59.99343 * 9 7 2 24 24 H 1.09007 * 109.46705 * 299.99306 * 9 7 2 25 25 H 1.09005 * 109.47095 * 59.99804 * 10 9 7 26 26 H 1.08999 * 109.47309 * 299.99673 * 10 9 7 27 27 H 0.96993 * 120.00283 * 5.53038 * 13 11 10 28 28 H 1.07997 * 119.99159 * 359.97076 * 15 14 13 29 29 H 1.08002 * 119.93285 * 180.02562 * 16 15 14 30 30 H 1.07997 * 120.00212 * 180.02562 * 19 17 16 31 31 H 0.96705 * 113.99427 * 269.71673 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4919 -4.9672 0.0012 12 8 0.2788 -4.9672 0.0011 13 7 2.1658 -6.1344 0.0008 14 6 1.4694 -7.3459 -0.1158 15 6 0.2246 -7.3760 -0.7268 16 6 -0.4604 -8.5708 -0.8414 17 6 0.0931 -9.7399 -0.3468 18 9 -0.5799 -10.9056 -0.4615 19 6 1.3351 -9.7164 0.2641 20 6 2.0270 -8.5218 0.3810 21 8 3.2497 -8.4979 0.9752 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6242 -2.5567 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8720 -3.6044 -0.8895 27 1 3.1324 -6.1363 0.0810 28 1 -0.2094 -6.4656 -1.1129 29 1 -1.4295 -8.5928 -1.3178 30 1 1.7651 -10.6293 0.6488 31 1 3.2204 -8.3414 1.9290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291844877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:24 Heat of formation + Delta-G solvation = -106.639759 kcal Electronic energy + Delta-G solvation = -17616.032361 eV Core-core repulsion = 14390.948654 eV Total energy + Delta-G solvation = -3225.083707 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.96147 -40.65528 -38.80762 -36.65395 -34.51573 -33.58959 -31.28016 -30.38444 -28.88794 -25.79013 -23.54274 -22.80602 -21.43033 -19.88623 -18.93210 -17.68652 -17.20000 -16.72962 -16.43848 -15.78340 -15.54347 -15.11612 -14.82997 -14.49658 -14.08021 -13.93777 -13.52500 -13.05665 -12.75610 -12.26171 -12.06154 -11.67888 -11.31577 -11.18615 -11.00320 -10.64180 -10.31728 -10.08040 -9.77404 -9.34422 -9.15572 -9.02017 -8.39795 -7.97175 -6.03176 -4.07994 0.89379 1.02941 2.84469 3.14627 3.28705 3.36431 3.39368 3.41668 3.80110 4.33243 4.41896 4.61620 4.81945 5.12967 5.22708 5.32359 5.46764 5.64997 5.86112 6.00181 6.05694 6.11660 6.19779 6.38583 6.73199 6.74570 7.34175 7.53095 7.65840 7.73918 7.97344 8.26620 8.43658 8.99873 9.56319 11.07732 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.048644 B = 0.003894 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.466567 B = 7188.477185 C = 7687.798094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.509 3.491 12 O -0.511 6.511 13 N -0.677 5.677 14 C 0.133 3.867 15 C -0.095 4.095 16 C -0.135 4.135 17 C 0.083 3.917 18 F -0.141 7.141 19 C -0.159 4.159 20 C 0.091 3.909 21 O -0.490 6.490 22 H 0.261 0.739 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.415 0.585 28 H 0.163 0.837 29 H 0.140 0.860 30 H 0.142 0.858 31 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.601 -18.056 0.916 18.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.385 6.385 13 N -0.322 5.322 14 C 0.036 3.964 15 C -0.115 4.115 16 C -0.154 4.154 17 C 0.062 3.938 18 F -0.120 7.120 19 C -0.178 4.178 20 C 0.043 3.957 21 O -0.300 6.300 22 H 0.071 0.929 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.103 0.897 26 H 0.104 0.896 27 H 0.251 0.749 28 H 0.181 0.819 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.780 -17.964 0.339 18.360 hybrid contribution 0.697 0.709 0.572 1.147 sum 4.477 -17.255 0.911 17.850 Atomic orbital electron populations 1.69997 1.06076 1.26614 1.50041 1.25023 0.94831 0.99302 0.95163 0.86522 0.80006 0.83721 0.77641 1.19714 1.20965 1.20983 1.21224 0.93005 0.90864 1.51631 0.92454 1.18936 0.93128 0.89319 0.98786 1.21936 1.00889 0.90956 1.03076 1.21950 0.88825 0.85432 0.73843 1.90643 1.14353 1.87113 1.46346 1.43954 1.11248 1.03876 1.73115 1.18319 0.93787 0.85670 0.98632 1.21355 0.93641 0.99233 0.97273 1.21140 1.01610 0.90841 1.01839 1.17397 0.91639 0.81755 1.02977 1.91486 1.79721 1.46384 1.94399 1.21067 0.94005 0.98999 1.03768 1.17709 0.86884 0.90849 1.00232 1.84834 1.24293 1.94344 1.26551 0.92918 0.95662 0.95668 0.89730 0.89550 0.74887 0.81936 0.84173 0.84068 0.75275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.53 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.04 0.91 4.26 -27.89 -0.12 0.80 16 10 C -0.13 -2.41 5.64 -27.88 -0.16 -2.57 16 11 C 0.51 8.98 7.64 -10.99 -0.08 8.90 16 12 O -0.51 -10.84 13.15 5.54 0.07 -10.76 16 13 N -0.68 -9.19 5.29 -9.73 -0.05 -9.24 16 14 C 0.13 1.81 6.45 -83.45 -0.54 1.27 16 15 C -0.09 -1.35 8.72 -39.42 -0.34 -1.70 16 16 C -0.13 -1.67 10.02 -39.51 -0.40 -2.06 16 17 C 0.08 0.99 7.30 -39.42 -0.29 0.70 16 18 F -0.14 -1.71 17.26 2.25 0.04 -1.67 16 19 C -0.16 -1.74 9.96 -39.40 -0.39 -2.14 16 20 C 0.09 1.05 6.72 -39.08 -0.26 0.78 16 21 O -0.49 -4.59 12.92 -19.64 -0.25 -4.85 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 26 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 27 H 0.41 4.47 8.34 -40.82 -0.34 4.13 16 28 H 0.16 2.65 5.78 -52.49 -0.30 2.34 16 29 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.39 2.07 9.06 45.56 0.41 2.48 16 LS Contribution 281.87 15.07 4.25 4.25 Total: -1.00 -32.65 281.87 -5.53 -38.17 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -2.30 Total: 3.18 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.99 Total: -9.24 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.68 Total: -35.20 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.18 Total: -15.61 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -32.65 -5.53 -38.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291844877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.468 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds