Wall clock time and date at job start Sun Mar 29 2020 23:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47264 * 2 1 4 4 N 1.46502 * 109.47222 * 184.83980 * 3 2 1 5 5 C 1.36974 * 120.00019 * 271.74054 * 4 3 2 6 6 H 1.08001 * 119.99413 * 137.33940 * 5 4 3 7 7 C 1.38965 * 120.00061 * 317.60968 * 5 4 3 8 8 N 1.31416 * 119.99785 * 174.03055 * 7 5 4 9 9 Si 1.86798 * 120.00053 * 354.02907 * 7 5 4 10 10 H 1.48502 * 109.47135 * 95.41601 * 9 7 5 11 11 H 1.48500 * 109.47249 * 215.41382 * 9 7 5 12 12 H 1.48498 * 109.47363 * 335.41461 * 9 7 5 13 13 C 1.34776 * 119.99652 * 91.74179 * 4 3 2 14 14 O 1.21665 * 119.99869 * 353.56168 * 13 4 3 15 15 C 1.47110 * 120.00171 * 173.55979 * 13 4 3 16 16 C 1.44445 * 123.46745 * 350.21719 * 15 13 4 17 17 C 1.32765 * 113.08700 * 179.76580 * 16 15 13 18 18 S 1.75502 * 110.59149 * 0.47755 * 17 16 15 19 19 C 1.36086 * 123.47417 * 170.50636 * 15 13 4 20 20 C 1.50702 * 124.59728 * 359.96770 * 19 15 13 21 21 H 1.08998 * 109.46626 * 184.85904 * 1 2 3 22 22 H 1.09003 * 109.46897 * 304.85310 * 1 2 3 23 23 H 1.08996 * 109.47165 * 64.85418 * 1 2 3 24 24 H 1.09000 * 109.47257 * 240.00288 * 2 1 3 25 25 H 1.09009 * 109.47432 * 119.99930 * 2 1 3 26 26 H 1.09004 * 109.46685 * 64.84023 * 3 2 1 27 27 H 1.08996 * 109.47155 * 304.84269 * 3 2 1 28 28 H 0.97011 * 119.99924 * 179.97438 * 8 7 5 29 29 H 1.08004 * 123.45597 * 359.96894 * 16 15 13 30 30 H 1.08000 * 124.70171 * 180.19714 * 17 16 15 31 31 H 1.08997 * 109.47111 * 89.99988 * 20 19 15 32 32 H 1.09001 * 109.47569 * 210.00400 * 20 19 15 33 33 H 1.09005 * 109.46811 * 329.99658 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5004 1.4442 -0.1165 5 6 4.2774 1.3756 1.0094 6 1 5.1479 0.7365 1.0266 7 6 3.9424 2.1239 2.1314 8 7 4.6170 1.9706 3.2488 9 14 2.5334 3.3476 2.0514 10 1 1.2923 2.7072 2.5563 11 1 2.8564 4.5301 2.8897 12 1 2.3311 3.7785 0.6448 13 6 4.0793 1.5132 -1.3317 14 8 3.3947 1.4560 -2.3358 15 6 5.5390 1.6577 -1.4439 16 6 6.4007 1.9369 -0.3187 17 6 7.6829 2.0204 -0.6530 18 16 7.8884 1.7716 -2.3781 19 6 6.2160 1.5479 -2.6193 20 6 5.5741 1.2658 -3.9533 21 1 -0.3632 -1.0240 0.0870 22 1 -0.3633 0.5873 0.8434 23 1 -0.3633 0.4367 -0.9302 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.7492 1.9307 0.9302 27 1 1.6076 1.9808 -0.8434 28 1 4.3834 2.4933 4.0320 29 1 6.0394 2.0614 0.6914 30 1 8.4872 2.2188 0.0398 31 1 5.3067 2.2067 -4.4341 32 1 6.2749 0.7208 -4.5858 33 1 4.6764 0.6655 -3.8049 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294650170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:29 Heat of formation + Delta-G solvation = 7.729720 kcal Electronic energy + Delta-G solvation = -17069.526156 eV Core-core repulsion = 14415.615057 eV Total energy + Delta-G solvation = -2653.911098 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.30238 -36.36550 -35.33939 -33.07486 -31.74517 -31.15021 -27.17140 -25.86676 -24.67506 -22.68036 -21.14886 -20.22865 -18.53399 -17.15233 -16.46222 -15.87838 -15.01190 -14.37481 -14.12848 -14.05235 -13.65376 -13.26367 -12.87732 -12.69856 -12.35031 -12.06770 -11.94585 -11.72370 -11.50783 -11.41085 -11.08414 -10.93815 -10.90178 -10.54451 -10.30995 -10.02002 -9.58864 -9.08422 -8.63631 -8.11124 -7.79510 -7.68414 -6.54476 -4.22079 1.51398 2.19609 2.57915 2.92689 3.02077 3.18269 3.20598 4.02426 4.28711 4.42862 4.88859 5.40787 5.51411 5.59032 5.70603 5.74657 5.84417 5.93623 6.06696 6.12616 6.29763 6.32434 6.38856 6.50951 6.58521 6.70114 6.81907 6.90832 6.98908 7.29111 7.38771 7.96861 8.14308 8.84135 9.24840 9.60255 10.52388 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.021411 B = 0.009358 C = 0.007132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.443569 B = 2991.516114 C = 3924.915445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C 0.109 3.891 4 N -0.461 5.461 5 C -0.338 4.338 6 H 0.115 0.885 7 C 0.061 3.939 8 N -0.865 5.865 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.263 1.263 13 C 0.542 3.458 14 O -0.592 6.592 15 C -0.131 4.131 16 C -0.089 4.089 17 C -0.255 4.255 18 S 0.097 5.903 19 C -0.164 4.164 20 C -0.079 4.079 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.278 0.722 29 H 0.203 0.797 30 H 0.158 0.842 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.138 -0.419 -5.870 5.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.014 4.014 4 N -0.181 5.181 5 C -0.466 4.466 6 H 0.133 0.867 7 C -0.147 4.147 8 N -0.500 5.500 9 Si 0.722 3.278 10 H -0.201 1.201 11 H -0.219 1.219 12 H -0.188 1.188 13 C 0.331 3.669 14 O -0.478 6.478 15 C -0.148 4.148 16 C -0.117 4.117 17 C -0.388 4.388 18 S 0.360 5.640 19 C -0.284 4.284 20 C -0.137 4.137 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.219 0.781 30 H 0.175 0.825 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.084 -0.399 -7.048 7.361 hybrid contribution -1.821 0.626 1.368 2.362 sum 0.264 0.227 -5.680 5.691 Atomic orbital electron populations 1.21719 0.96354 1.01137 1.01369 1.21789 0.94775 0.97850 1.02665 1.21676 0.82973 0.96622 1.00121 1.43568 1.04057 1.64685 1.05741 1.19295 1.11081 1.26466 0.89711 0.86742 1.25435 0.97612 0.96458 0.95168 1.69644 1.39698 1.39436 1.01254 0.86662 0.81629 0.80702 0.78774 1.20087 1.21852 1.18767 1.17611 0.86382 0.79705 0.83170 1.90590 1.64647 1.56250 1.36362 1.20249 0.95042 1.07502 0.92004 1.23061 0.90774 0.94984 1.02884 1.25440 1.01227 1.15242 0.96938 1.82515 1.04116 1.71568 1.05751 1.24273 0.97873 1.06559 0.99697 1.20407 1.00793 1.02345 0.90196 0.92949 0.93114 0.92915 0.91744 0.91342 0.92846 0.91059 0.91207 0.78110 0.82462 0.91199 0.92748 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 37.16 0.37 -1.94 16 2 C -0.13 -2.54 6.26 -26.73 -0.17 -2.71 16 3 C 0.11 2.39 3.79 -4.04 -0.02 2.37 16 4 N -0.46 -11.07 2.20 -116.13 -0.26 -11.33 16 5 C -0.34 -8.44 6.65 -14.99 -0.10 -8.53 16 6 H 0.12 3.00 6.19 -52.49 -0.32 2.68 16 7 C 0.06 1.53 5.36 -17.46 -0.09 1.44 16 8 N -0.86 -22.62 13.96 55.50 0.77 -21.84 16 9 Si 0.89 20.30 24.60 -169.99 -4.18 16.12 16 10 H -0.27 -6.00 6.99 56.52 0.40 -5.61 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.26 -6.08 6.50 56.52 0.37 -5.71 16 13 C 0.54 13.04 7.55 -12.66 -0.10 12.94 16 14 O -0.59 -14.66 13.85 5.22 0.07 -14.59 16 15 C -0.13 -2.89 5.86 -104.63 -0.61 -3.51 16 16 C -0.09 -1.89 8.44 -39.01 -0.33 -2.21 16 17 C -0.25 -4.56 11.12 28.86 0.32 -4.24 16 18 S 0.10 1.57 22.97 -107.50 -2.47 -0.90 16 19 C -0.16 -3.16 6.34 -35.08 -0.22 -3.38 16 20 C -0.08 -1.35 9.49 36.01 0.34 -1.00 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 26 H 0.05 1.19 2.61 -51.93 -0.14 1.05 16 27 H 0.07 1.56 7.46 -51.93 -0.39 1.18 16 28 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.20 4.69 4.62 -52.48 -0.24 4.44 16 30 H 0.16 2.42 8.06 -52.49 -0.42 2.00 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.10 1.83 6.20 -51.93 -0.32 1.51 16 LS Contribution 279.40 15.07 4.21 4.21 Total: -1.00 -27.02 279.40 -6.42 -33.44 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -3.97 Total: 5.66 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -0.61 Total: -10.78 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.52 Total: -33.17 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.07 Total: -14.59 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.18 Total: 16.12 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.47 Total: -0.90 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.02 -6.42 -33.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294650170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.173 kcal (2) G-P(sol) polarization free energy of solvation -27.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds