Wall clock time and date at job start Sun Mar 29 2020 23:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21635 * 120.00320 * 359.97438 * 14 13 3 16 16 C 1.47196 * 119.99792 * 180.02562 * 14 13 3 17 17 C 1.44423 * 123.46248 * 359.70165 * 16 14 13 18 18 C 1.32769 * 113.08383 * 179.80825 * 17 16 14 19 19 S 1.75506 * 110.57526 * 0.44578 * 18 17 16 20 20 C 1.36005 * 123.45720 * 180.02562 * 16 14 13 21 21 C 1.50702 * 124.59576 * 359.94180 * 20 16 14 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 27 27 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 28 28 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 29 29 H 1.07998 * 123.45614 * 0.02562 * 17 16 14 30 30 H 1.07993 * 124.71303 * 180.18051 * 18 17 16 31 31 H 1.08998 * 109.47209 * 89.99787 * 21 20 16 32 32 H 1.09003 * 109.47310 * 210.00336 * 21 20 16 33 33 H 1.09001 * 109.46827 * 329.99869 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3415 2.6326 0.4314 16 6 0.0461 3.3229 2.6246 17 6 0.9058 3.3998 3.7824 18 6 0.3497 4.0431 4.8020 19 16 -1.2702 4.5752 4.3858 20 6 -1.1625 3.9160 2.8176 21 6 -2.2578 3.9824 1.7847 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 3.8292 -0.0604 -2.9503 28 1 2.2720 2.1231 1.9978 29 1 1.9005 2.9803 3.8143 30 1 0.8261 4.2115 5.7564 31 1 -2.9028 3.1092 1.8823 32 1 -2.8460 4.8875 1.9364 33 1 -1.8168 3.9987 0.7880 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295048634.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:59 Heat of formation + Delta-G solvation = -37.636819 kcal Electronic energy + Delta-G solvation = -16627.442686 eV Core-core repulsion = 13971.564347 eV Total energy + Delta-G solvation = -2655.878339 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.91615 -38.07094 -36.78199 -34.33941 -32.93015 -32.61626 -29.29971 -27.76139 -25.30230 -24.20522 -22.62553 -21.48193 -20.41267 -18.56965 -18.11811 -17.28561 -16.87125 -16.30930 -16.22260 -15.27213 -14.81006 -14.62540 -14.38858 -14.19636 -13.79271 -13.54109 -13.44444 -13.16850 -12.96283 -12.88674 -12.65558 -12.49605 -12.17184 -12.08749 -11.90709 -11.58159 -11.06404 -10.58733 -10.45758 -9.77280 -9.58705 -9.25246 -8.15677 -6.33204 -0.11672 0.61700 1.00048 1.12410 1.44823 1.46754 1.54522 2.37726 2.55060 2.78540 3.13716 3.80340 4.02595 4.24214 4.45562 4.49543 4.57050 4.67444 4.69784 4.75615 5.01349 5.07788 5.10586 5.26480 5.32214 5.36685 5.44167 5.56870 5.65209 5.80082 5.94945 6.17163 6.74184 7.02120 7.33692 7.59590 8.89618 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.005694 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.085611 B = 4916.439343 C = 5459.225540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.280 3.720 4 H -0.001 1.001 5 C -0.550 4.550 6 H 0.070 0.930 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.700 5.700 14 C 0.558 3.442 15 O -0.579 6.579 16 C -0.195 4.195 17 C -0.120 4.120 18 C -0.227 4.227 19 S 0.224 5.776 20 C -0.165 4.165 21 C -0.092 4.092 22 H 0.027 0.973 23 H 0.041 0.959 24 H 0.045 0.955 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.265 0.735 28 H 0.400 0.600 29 H 0.158 0.842 30 H 0.202 0.798 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 6.909 15.232 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.348 5.348 14 C 0.345 3.655 15 O -0.462 6.462 16 C -0.212 4.212 17 C -0.149 4.149 18 C -0.361 4.361 19 S 0.490 5.510 20 C -0.285 4.285 21 C -0.150 4.150 22 H 0.046 0.954 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.235 0.765 29 H 0.175 0.825 30 H 0.219 0.781 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.084 7.559 15.182 18.787 hybrid contribution 2.324 -1.039 -1.207 2.817 sum -5.760 6.520 13.974 16.461 Atomic orbital electron populations 1.21665 0.96990 0.99059 1.00231 1.21776 0.93766 0.99137 1.01210 1.18373 0.93665 0.89140 0.81196 0.98317 1.21541 0.91396 1.39091 1.06783 0.91202 1.25765 1.03340 0.94302 0.94948 1.70043 1.37144 1.38283 1.09814 0.85427 0.79057 0.78420 0.77607 1.18881 1.21093 1.19739 1.46146 1.15267 1.55853 1.17564 1.18097 0.81963 0.78272 0.87136 1.90668 1.52341 1.61439 1.41774 1.20384 0.96458 1.08385 0.96018 1.21348 1.01035 1.01325 0.91197 1.25776 0.99115 1.06569 1.04663 1.82589 1.13095 1.53579 1.01784 1.24763 0.98927 1.01928 1.02918 1.20558 0.94632 1.02932 0.96884 0.95368 0.94012 0.93632 0.94266 0.90873 0.92565 0.76503 0.82471 0.78150 0.90340 0.89237 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.67 8.51 71.98 0.61 -5.06 16 2 C -0.12 -6.06 5.45 30.59 0.17 -5.89 16 3 C 0.28 14.71 2.24 44.24 0.10 14.81 16 4 H 0.00 -0.07 7.58 -2.39 -0.02 -0.08 16 5 C -0.55 -29.56 8.73 25.60 0.22 -29.33 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.90 5.29 84.65 0.45 1.35 16 8 N -0.91 -52.75 11.30 21.45 0.24 -52.51 16 9 Si 0.97 42.32 29.54 68.60 2.03 44.34 16 10 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 13 N -0.70 -30.47 5.00 -449.59 -2.25 -32.72 16 14 C 0.56 23.71 6.36 86.60 0.55 24.26 16 15 O -0.58 -28.13 11.20 -4.14 -0.05 -28.18 16 16 C -0.20 -6.48 5.98 -19.87 -0.12 -6.60 16 17 C -0.12 -3.06 9.91 22.67 0.22 -2.84 16 18 C -0.23 -4.31 11.12 66.64 0.74 -3.57 16 19 S 0.22 4.30 22.97 -56.49 -1.30 3.00 16 20 C -0.16 -4.71 6.34 25.17 0.16 -4.55 16 21 C -0.09 -2.57 9.60 71.24 0.68 -1.89 16 22 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 23 H 0.04 1.89 5.64 -2.39 -0.01 1.88 16 24 H 0.04 1.85 8.14 -2.38 -0.02 1.84 16 25 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.07 4.10 5.95 -2.39 -0.01 4.09 16 27 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.40 15.00 7.08 -92.71 -0.66 14.35 16 29 H 0.16 3.54 7.10 -2.91 -0.02 3.52 16 30 H 0.20 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.61 5.94 -2.39 -0.01 2.60 16 Total: -1.00 -66.19 284.65 2.94 -63.25 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.47 Total: 22.13 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 3.79 Total: -19.32 kcal Atomic # 7 Polarization: -83.23 SS G_CDS: -2.01 Total: -85.23 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.05 Total: -28.18 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 4.30 SS G_CDS: -1.30 Total: 3.00 kcal Total: -66.19 2.94 -63.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295048634.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.615 kcal (2) G-P(sol) polarization free energy of solvation -66.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds