Wall clock time and date at job start Sun Mar 29 2020 23:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47106 * 2 1 4 4 S 1.70614 * 124.51619 * 269.97445 * 3 2 1 5 5 C 1.75830 * 91.56769 * 180.02562 * 4 3 2 6 6 C 1.46454 * 125.46325 * 179.97438 * 5 4 3 7 7 O 1.21744 * 120.00582 * 186.33910 * 6 5 4 8 8 N 1.34783 * 119.99958 * 6.33654 * 6 5 4 9 9 C 1.46496 * 120.00086 * 185.69107 * 8 6 5 10 10 C 1.36888 * 119.99831 * 5.69550 * 8 6 5 11 11 H 1.08003 * 119.99951 * 42.86480 * 10 8 6 12 12 C 1.39003 * 119.99769 * 222.87248 * 10 8 6 13 13 N 1.31404 * 120.00278 * 8.20857 * 12 10 8 14 14 Si 1.86799 * 119.99809 * 188.21176 * 12 10 8 15 15 H 1.48498 * 109.46982 * 60.00122 * 14 12 10 16 16 H 1.48508 * 109.47033 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47297 * 299.99503 * 14 12 10 18 18 C 1.36766 * 109.07711 * 359.76396 * 5 4 3 19 19 C 1.33852 * 124.51672 * 89.99768 * 3 2 1 20 20 C 1.50704 * 122.44117 * 359.95927 * 19 3 2 21 21 H 1.08995 * 109.47104 * 300.00261 * 1 2 3 22 22 H 1.08997 * 109.46934 * 60.00034 * 1 2 3 23 23 H 1.08999 * 109.46839 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47344 * 240.00201 * 2 1 3 25 25 H 1.09005 * 109.46879 * 119.99715 * 2 1 3 26 26 H 1.09001 * 109.47567 * 86.25914 * 9 8 6 27 27 H 1.09001 * 109.47159 * 206.25958 * 9 8 6 28 28 H 1.08997 * 109.47351 * 326.25497 * 9 8 6 29 29 H 0.96992 * 120.00018 * 180.02562 * 13 12 10 30 30 H 1.08003 * 123.36429 * 180.24371 * 18 5 4 31 31 H 1.08995 * 109.47297 * 89.99887 * 20 19 3 32 32 H 1.08995 * 109.47434 * 329.99573 * 20 19 3 33 33 H 1.09007 * 109.47148 * 210.00037 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3552 2.3321 -1.4058 5 6 2.8474 3.7231 -0.4495 6 6 3.3024 5.0066 -0.9883 7 8 3.7294 5.8649 -0.2380 8 7 3.2483 5.2377 -2.3151 9 6 3.8172 6.4693 -2.8679 10 6 2.6618 4.3216 -3.1461 11 1 1.7321 3.8516 -2.8612 12 6 3.2629 3.9961 -4.3564 13 7 4.4682 4.4411 -4.6321 14 14 2.3573 2.9261 -5.5910 15 1 1.0903 3.5915 -5.9872 16 1 3.2081 2.7275 -6.7919 17 1 2.0536 1.6091 -4.9758 18 6 2.7327 3.4159 0.8783 19 6 2.2851 2.1359 1.1029 20 6 2.0876 1.5801 2.4897 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 4.8799 6.3236 -3.0622 27 1 3.3085 6.7185 -3.7991 28 1 3.6866 7.2824 -2.1538 29 1 4.8874 4.2143 -5.4768 30 1 2.9726 4.1089 1.6712 31 1 3.0086 1.1030 2.8245 32 1 1.2823 0.8457 2.4755 33 1 1.8289 2.3898 3.1722 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299495633.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:00 Heat of formation + Delta-G solvation = -21.414630 kcal Electronic energy + Delta-G solvation = -16688.106163 eV Core-core repulsion = 14032.931271 eV Total energy + Delta-G solvation = -2655.174892 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.62474 -37.60888 -34.80606 -33.22540 -31.70824 -29.82735 -27.36582 -26.23982 -25.10800 -23.03388 -21.62144 -19.48258 -18.23370 -17.16963 -16.52265 -15.44059 -14.66980 -14.53480 -14.08348 -13.82214 -13.73944 -13.40202 -12.90866 -12.51740 -12.22925 -11.98034 -11.77816 -11.58927 -11.41904 -11.36412 -11.14283 -10.97084 -10.83659 -10.75237 -10.70215 -10.43637 -9.73254 -9.14617 -8.67143 -7.84696 -7.53478 -7.43238 -6.60151 -4.38167 1.49333 2.56418 2.96205 3.08762 3.08918 3.11903 3.18750 3.90786 4.34319 4.76227 4.88657 5.17195 5.30122 5.53290 5.63319 5.73783 5.90570 5.95801 6.00521 6.13642 6.17242 6.26578 6.33778 6.45412 6.63622 6.79630 6.84229 7.09669 7.14836 7.18005 7.27267 7.73922 8.13796 8.82218 9.33745 9.77716 10.40411 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.009583 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.733405 B = 2921.102763 C = 4071.348008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C -0.286 4.286 4 S 0.282 5.718 5 C -0.218 4.218 6 C 0.535 3.465 7 O -0.600 6.600 8 N -0.439 5.439 9 C 0.115 3.885 10 C -0.346 4.346 11 H 0.100 0.900 12 C 0.061 3.939 13 N -0.843 5.843 14 Si 0.908 3.092 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.260 1.260 18 C -0.098 4.098 19 C -0.127 4.127 20 C -0.088 4.088 21 H 0.055 0.945 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.277 0.723 30 H 0.135 0.865 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.543 -7.778 3.690 10.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.404 4.404 4 S 0.558 5.442 5 C -0.339 4.339 6 C 0.324 3.676 7 O -0.487 6.487 8 N -0.156 5.156 9 C -0.028 4.028 10 C -0.480 4.480 11 H 0.117 0.883 12 C -0.150 4.150 13 N -0.476 5.476 14 Si 0.733 3.267 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.184 1.184 18 C -0.131 4.131 19 C -0.139 4.139 20 C -0.147 4.147 21 H 0.074 0.926 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.153 0.847 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.270 -7.689 2.319 9.606 hybrid contribution -0.138 -0.210 0.823 0.861 sum -5.408 -7.899 3.142 10.075 Atomic orbital electron populations 1.21764 0.95145 1.01014 1.02371 1.19907 0.95519 0.90965 1.01986 1.25232 1.09482 1.02518 1.03198 1.84402 1.57121 1.00012 1.02650 1.24587 1.12190 1.00068 0.97057 1.17260 0.81673 0.85587 0.83073 1.90650 1.52923 1.46356 1.58821 1.43208 1.50523 1.17591 1.04315 1.21320 0.99086 0.85592 0.96784 1.19386 1.06615 1.20932 1.01098 0.88305 1.25614 0.94593 0.96104 0.98729 1.69895 1.12113 1.41480 1.24069 0.86251 0.79763 0.80898 0.79828 1.19049 1.20241 1.18431 1.20311 1.01754 0.95830 0.95200 1.18368 1.05893 0.94234 0.95451 1.20416 1.00959 1.00220 0.93065 0.92615 0.92430 0.92845 0.91587 0.91366 0.92642 0.92399 0.94010 0.91278 0.84729 0.92354 0.92357 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.89 37.16 0.37 -1.41 16 2 C -0.04 -0.63 5.72 -27.88 -0.16 -0.79 16 3 C -0.29 -5.04 5.53 -35.85 -0.20 -5.24 16 4 S 0.28 5.76 18.46 -107.50 -1.98 3.78 16 5 C -0.22 -5.08 6.27 -36.81 -0.23 -5.31 16 6 C 0.53 14.10 7.59 -12.95 -0.10 14.00 16 7 O -0.60 -16.97 16.46 5.15 0.08 -16.89 16 8 N -0.44 -11.39 2.90 -123.77 -0.36 -11.75 16 9 C 0.12 2.80 8.89 59.84 0.53 3.33 16 10 C -0.35 -8.58 6.70 -15.01 -0.10 -8.68 16 11 H 0.10 2.36 5.65 -36.55 -0.21 2.15 16 12 C 0.06 1.48 5.21 -17.45 -0.09 1.38 16 13 N -0.84 -21.39 11.86 55.50 0.66 -20.73 16 14 Si 0.91 18.28 29.56 -169.99 -5.03 13.26 16 15 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 16 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 17 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 18 C -0.10 -2.04 9.80 -40.40 -0.40 -2.43 16 19 C -0.13 -2.28 5.78 -106.45 -0.62 -2.90 16 20 C -0.09 -1.23 9.55 36.01 0.34 -0.89 16 21 H 0.05 0.68 7.80 -51.93 -0.41 0.28 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.86 7.25 -51.93 -0.38 0.48 16 26 H 0.06 1.39 7.65 -51.93 -0.40 1.00 16 27 H 0.06 1.34 7.91 -51.93 -0.41 0.93 16 28 H 0.04 0.97 7.46 -51.93 -0.39 0.58 16 29 H 0.28 6.58 8.31 -40.82 -0.34 6.24 16 30 H 0.13 2.74 8.06 -52.48 -0.42 2.32 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.72 6.86 -51.93 -0.36 0.37 16 33 H 0.06 0.76 8.13 -51.92 -0.42 0.34 16 LS Contribution 289.15 15.07 4.36 4.36 Total: -1.00 -28.48 289.15 -7.12 -35.60 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.21 Total: 1.30 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.65 Total: -8.92 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.30 Total: -32.48 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.08 Total: -16.89 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 16 Polarization: 5.76 SS G_CDS: -1.98 Total: 3.78 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.48 -7.12 -35.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299495633.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.185 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds