Wall clock time and date at job start Sun Mar 29 2020 23:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00144 * 2 1 4 4 H 1.48495 * 109.47494 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46988 * 300.00086 * 3 2 1 6 6 H 1.48501 * 109.46756 * 59.99793 * 3 2 1 7 7 C 1.37878 * 120.00284 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00144 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46922 * 180.02562 * 9 7 2 11 11 O 1.45209 * 109.46712 * 179.97438 * 10 9 7 12 12 C 1.34772 * 116.99505 * 179.97438 * 11 10 9 13 13 O 1.21519 * 120.00438 * 359.97438 * 12 11 10 14 14 C 1.47291 * 119.99400 * 179.97438 * 12 11 10 15 15 C 1.39854 * 120.20522 * 5.90423 * 14 12 11 16 16 C 1.37692 * 119.95872 * 180.02562 * 15 14 12 17 17 C 1.38648 * 120.37835 * 0.02562 * 16 15 14 18 18 C 1.38093 * 120.41390 * 359.97438 * 17 16 15 19 19 F 1.35098 * 119.98478 * 179.97438 * 18 17 16 20 20 C 1.39169 * 120.02972 * 0.02562 * 18 17 16 21 21 N 1.38966 * 120.18799 * 179.70231 * 20 18 17 22 22 H 0.97003 * 120.00313 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47269 * 59.99319 * 9 7 2 24 24 H 1.09001 * 109.46636 * 299.99893 * 9 7 2 25 25 H 1.08991 * 109.47452 * 59.99709 * 10 9 7 26 26 H 1.09001 * 109.47251 * 299.99361 * 10 9 7 27 27 H 1.08000 * 120.02075 * 0.03582 * 15 14 12 28 28 H 1.07995 * 119.80781 * 179.97438 * 16 15 14 29 29 H 1.08003 * 119.79365 * 179.97438 * 17 16 15 30 30 H 0.97000 * 120.00175 * 354.45202 * 21 20 18 31 31 H 0.97008 * 120.00385 * 174.44901 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 8 1.5193 -4.9196 -0.0020 12 6 2.2534 -6.0498 -0.0024 13 8 3.4669 -5.9862 -0.0027 14 6 1.5846 -7.3621 -0.0023 15 6 0.1939 -7.4432 -0.1262 16 6 -0.4260 -8.6727 -0.1250 17 6 0.3207 -9.8343 -0.0010 18 6 1.6947 -9.7723 0.1222 19 9 2.4137 -10.9097 0.2431 20 6 2.3390 -8.5387 0.1231 21 7 3.7209 -8.4723 0.2532 22 1 -0.4851 0.8400 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6241 -2.5574 0.8880 25 1 2.8713 -3.6047 0.8889 26 1 2.8726 -3.6039 -0.8910 27 1 -0.3934 -6.5420 -0.2229 28 1 -1.5001 -8.7324 -0.2204 29 1 -0.1754 -10.7936 -0.0008 30 1 4.2314 -9.2792 0.4242 31 1 4.1752 -7.6189 0.1729 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309643612.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:08 Heat of formation + Delta-G solvation = -132.439592 kcal Electronic energy + Delta-G solvation = -17643.077355 eV Core-core repulsion = 14416.874883 eV Total energy + Delta-G solvation = -3226.202472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85145 -41.74672 -39.74043 -37.78297 -35.66826 -35.36147 -32.70281 -31.71432 -29.79753 -27.24444 -25.37733 -23.47343 -22.88670 -22.25304 -19.50027 -18.68799 -18.19990 -18.12131 -17.74280 -17.55409 -16.83445 -16.64502 -16.43785 -15.97604 -15.41631 -15.17202 -14.63456 -14.36775 -14.04484 -13.76006 -13.13957 -13.09888 -12.93103 -12.76204 -12.62684 -12.54743 -11.87656 -11.82504 -11.50866 -11.49556 -11.30738 -10.61562 -10.02021 -8.71314 -8.26986 -6.39932 -0.39745 0.34561 1.39848 1.41487 1.41994 1.54614 1.65603 2.40083 2.64639 2.70940 3.07729 3.21392 3.55770 3.87792 3.93853 4.21906 4.22592 4.29950 4.49128 4.68313 4.81359 4.99284 5.19933 5.23142 5.38092 5.46498 5.47035 5.71909 5.77305 6.06407 6.23809 6.61635 6.73273 6.77688 7.29883 8.85770 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.049181 B = 0.003912 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.183524 B = 7155.908887 C = 7700.316581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.064 0.936 9 C 0.031 3.969 10 C 0.091 3.909 11 O -0.353 6.353 12 C 0.512 3.488 13 O -0.547 6.547 14 C -0.219 4.219 15 C -0.021 4.021 16 C -0.160 4.160 17 C -0.050 4.050 18 C -0.016 4.016 19 F -0.142 7.142 20 C 0.246 3.754 21 N -0.850 5.850 22 H 0.268 0.732 23 H 0.009 0.991 24 H 0.008 0.992 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.145 0.855 28 H 0.173 0.827 29 H 0.175 0.825 30 H 0.407 0.593 31 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.344 -20.162 0.033 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.588 4.588 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.018 3.982 11 O -0.269 6.269 12 C 0.361 3.639 13 O -0.440 6.440 14 C -0.225 4.225 15 C -0.040 4.040 16 C -0.179 4.179 17 C -0.069 4.069 18 C -0.040 4.040 19 F -0.121 7.121 20 C 0.133 3.867 21 N -0.397 5.397 22 H 0.077 0.923 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.163 0.837 28 H 0.190 0.810 29 H 0.192 0.808 30 H 0.237 0.763 31 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 0.611 -19.953 0.035 19.962 hybrid contribution 1.100 0.929 0.084 1.442 sum 1.712 -19.024 0.119 19.101 Atomic orbital electron populations 1.70090 1.07755 1.28214 1.50389 1.25933 0.95828 1.03312 0.94077 0.85288 0.78883 0.78180 0.78016 1.18709 1.20049 1.20081 1.21398 0.93695 0.91237 1.52471 0.91746 1.18987 0.94343 0.90445 0.96869 1.23217 0.95152 0.78685 1.01125 1.86566 1.41719 1.15426 1.83194 1.21389 0.85234 0.85622 0.71639 1.90415 1.16122 1.87519 1.49963 1.18389 0.95108 0.87220 1.21827 1.21571 0.91318 1.00483 0.90621 1.21112 1.02113 0.89671 1.05034 1.21604 0.90194 1.01952 0.93147 1.17068 0.90782 0.79576 1.16537 1.91448 1.78211 1.47717 1.94678 1.17840 0.85557 0.91690 0.91610 1.43350 1.03604 1.15522 1.77251 0.92318 0.97282 0.97367 0.92092 0.92025 0.83713 0.81000 0.80782 0.76252 0.74381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.88 13.29 21.45 0.28 -54.60 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 7 C -0.55 -31.01 9.11 25.60 0.23 -30.78 16 8 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.64 5.35 29.85 0.16 1.80 16 10 C 0.09 4.09 5.42 71.98 0.39 4.48 16 11 O -0.35 -14.25 9.49 -56.83 -0.54 -14.79 16 12 C 0.51 18.52 7.87 70.20 0.55 19.07 16 13 O -0.55 -20.97 13.44 19.77 0.27 -20.70 16 14 C -0.22 -6.32 5.89 -20.00 -0.12 -6.43 16 15 C -0.02 -0.49 9.61 22.53 0.22 -0.28 16 16 C -0.16 -2.56 10.02 22.24 0.22 -2.34 16 17 C -0.05 -0.77 10.00 22.33 0.22 -0.55 16 18 C -0.02 -0.33 7.30 22.46 0.16 -0.17 16 19 F -0.14 -2.95 16.64 44.97 0.75 -2.20 16 20 C 0.25 6.38 6.77 38.74 0.26 6.64 16 21 N -0.85 -21.04 8.93 -50.77 -0.45 -21.50 16 22 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 23 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 25 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 26 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 27 H 0.15 3.39 7.62 -2.91 -0.02 3.37 16 28 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 29 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 30 H 0.41 7.95 8.32 -92.71 -0.77 7.17 16 31 H 0.41 11.76 5.35 -94.58 -0.51 11.25 16 Total: -1.00 -65.46 281.46 5.01 -60.46 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -0.10 Total: 15.64 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 2.77 Total: -7.67 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -0.17 Total: -76.09 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.27 Total: -35.49 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.75 Total: -2.20 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -65.46 5.01 -60.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309643612.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.983 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds