Wall clock time and date at job start Sun Mar 29 2020 23:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75889 * 125.20397 * 2 1 4 4 C 1.75885 * 90.97088 * 180.02562 * 3 2 1 5 5 C 1.33392 * 109.59193 * 359.73259 * 4 3 2 6 6 C 1.33382 * 125.20491 * 180.02562 * 2 1 3 7 7 C 1.50703 * 122.53978 * 359.97438 * 6 2 1 8 8 C 1.50701 * 109.47394 * 84.99532 * 7 6 2 9 9 O 1.21275 * 119.99943 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99964 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99973 * 179.97438 * 10 8 7 12 12 H 1.09007 * 109.46864 * 325.00310 * 11 10 8 13 13 C 1.53000 * 109.46908 * 85.00105 * 11 10 8 14 14 C 1.50693 * 109.47398 * 205.00064 * 11 10 8 15 15 H 1.08005 * 120.00291 * 354.36544 * 14 11 10 16 16 C 1.37881 * 120.00259 * 174.36876 * 14 11 10 17 17 N 1.31514 * 120.00212 * 156.61898 * 16 14 11 18 18 Si 1.86795 * 119.99775 * 336.88788 * 16 14 11 19 19 H 1.48501 * 109.47165 * 179.72704 * 18 16 14 20 20 H 1.48500 * 109.47318 * 299.72681 * 18 16 14 21 21 H 1.48500 * 109.47076 * 59.72783 * 18 16 14 22 22 H 1.09000 * 109.46956 * 269.97712 * 1 2 3 23 23 H 1.09004 * 109.47001 * 29.97335 * 1 2 3 24 24 H 1.08993 * 109.47264 * 149.97786 * 1 2 3 25 25 H 1.07994 * 125.20046 * 179.97438 * 4 3 2 26 26 H 1.07995 * 122.53933 * 180.24104 * 5 4 3 27 27 H 1.09007 * 109.46709 * 324.99789 * 7 6 2 28 28 H 1.08994 * 109.47173 * 205.00085 * 7 6 2 29 29 H 0.96999 * 120.00353 * 0.02562 * 10 8 7 30 30 H 1.09003 * 109.46967 * 173.10985 * 13 11 10 31 31 H 1.09007 * 109.46955 * 293.10213 * 13 11 10 32 32 H 1.08994 * 109.47507 * 53.10469 * 13 11 10 33 33 H 0.97003 * 119.99433 * 355.20223 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4372 0.0000 4 6 3.9751 0.4477 -0.0008 5 6 3.6380 -0.8429 0.0049 6 6 2.2759 -1.0899 -0.0005 7 6 1.7052 -2.4846 -0.0005 8 6 1.3997 -2.9024 -1.4159 9 8 1.6238 -2.1426 -2.3342 10 7 0.8774 -4.1204 -1.6612 11 6 0.5799 -4.5263 -3.0370 12 1 0.2408 -3.6605 -3.6059 13 6 1.8424 -5.0991 -3.6840 14 6 -0.5009 -5.5764 -3.0284 15 1 -0.8598 -5.9743 -2.0907 16 6 -1.0315 -6.0295 -4.2177 17 7 -1.6033 -7.2124 -4.2743 18 14 -0.9314 -4.9661 -5.7501 19 1 -1.5645 -5.6783 -6.8891 20 1 -1.6427 -3.6847 -5.5108 21 1 0.4924 -4.6899 -6.0689 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8903 -0.5134 24 1 -0.3633 -0.8897 -0.5141 25 1 4.9862 0.8271 -0.0015 26 1 4.3720 -1.6350 0.0094 27 1 0.7887 -2.5021 0.5893 28 1 2.4297 -3.1737 0.4334 29 1 0.6977 -4.7280 -0.9267 30 1 1.5942 -5.5125 -4.6616 31 1 2.5818 -4.3068 -3.8017 32 1 2.2508 -5.8859 -3.0498 33 1 -1.5905 -7.7949 -3.4988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330952066.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:17 Heat of formation + Delta-G solvation = -18.818690 kcal Electronic energy + Delta-G solvation = -16327.979735 eV Core-core repulsion = 13672.917412 eV Total energy + Delta-G solvation = -2655.062324 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.49398 -37.69373 -34.85823 -32.48345 -32.12608 -30.54460 -28.85667 -25.56239 -24.79814 -22.71756 -21.03811 -19.53630 -18.35472 -17.65856 -17.10328 -16.27529 -15.59724 -14.78700 -14.51267 -13.93068 -13.56636 -13.30419 -12.93301 -12.78225 -12.60186 -12.43859 -12.08824 -12.01667 -11.78773 -11.49189 -11.42741 -11.23324 -10.66478 -10.48586 -10.10528 -9.83695 -9.21754 -9.13514 -8.45690 -8.29883 -8.25451 -8.13446 -6.59748 -4.20563 1.08784 1.70470 2.04438 2.75816 3.29833 3.41005 3.45911 3.61704 4.16259 4.44279 4.88290 4.93074 5.11323 5.20522 5.36121 5.49563 5.54191 5.57289 5.68902 5.69871 6.03485 6.13858 6.40619 6.46982 6.57088 6.61461 6.70074 6.98936 7.31637 7.43602 7.69316 8.24497 8.52055 8.71706 9.02885 9.45336 10.78477 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.037667 B = 0.005017 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.172482 B = 5579.953289 C = 5660.302318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.158 4.158 3 S 0.079 5.921 4 C -0.220 4.220 5 C -0.113 4.113 6 C -0.085 4.085 7 C -0.085 4.085 8 C 0.502 3.498 9 O -0.547 6.547 10 N -0.705 5.705 11 C 0.244 3.756 12 H 0.039 0.961 13 C -0.155 4.155 14 C -0.624 4.624 15 H 0.062 0.938 16 C 0.046 3.954 17 N -0.891 5.891 18 Si 1.033 2.967 19 H -0.283 1.283 20 H -0.281 1.281 21 H -0.274 1.274 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.161 0.839 26 H 0.137 0.863 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.392 0.608 30 H 0.057 0.943 31 H 0.028 0.972 32 H 0.042 0.958 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.866 12.683 11.099 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.275 4.275 3 S 0.342 5.658 4 C -0.355 4.355 5 C -0.144 4.144 6 C -0.097 4.097 7 C -0.128 4.128 8 C 0.287 3.713 9 O -0.425 6.425 10 N -0.354 5.354 11 C 0.140 3.860 12 H 0.057 0.943 13 C -0.214 4.214 14 C -0.661 4.661 15 H 0.080 0.920 16 C -0.162 4.162 17 N -0.523 5.523 18 Si 0.860 3.140 19 H -0.209 1.209 20 H -0.207 1.207 21 H -0.200 1.200 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.178 0.822 26 H 0.155 0.845 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.225 0.775 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.291 14.850 8.822 18.749 hybrid contribution 0.798 -1.967 1.958 2.888 sum 8.089 12.883 10.780 18.645 Atomic orbital electron populations 1.20347 0.87955 1.03696 1.02229 1.24187 0.99782 0.94950 1.08598 1.84021 0.97375 1.10047 1.74316 1.25364 1.01431 0.96619 1.12106 1.19984 0.95549 0.96470 1.02396 1.18247 0.92782 0.94486 1.04220 1.20418 1.02526 0.93524 0.96308 1.20391 0.78179 0.82405 0.90360 1.90661 1.53131 1.52559 1.46176 1.46298 1.62506 1.15334 1.11241 1.18952 0.93195 0.95287 0.78536 0.94309 1.22417 0.98739 0.99257 1.00964 1.22015 1.23761 1.24853 0.95518 0.91980 1.25620 0.93070 0.96346 1.01149 1.70873 1.42575 1.06350 1.32481 0.84188 0.77455 0.76031 0.76310 1.20853 1.20694 1.20002 0.90867 0.91303 0.90245 0.82151 0.84537 0.88479 0.88513 0.77490 0.92367 0.95270 0.93859 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.78 36.01 0.35 -0.68 16 2 C -0.16 -2.21 6.50 -36.01 -0.23 -2.45 16 3 S 0.08 0.97 23.33 -107.50 -2.51 -1.54 16 4 C -0.22 -2.66 11.23 29.04 0.33 -2.34 16 5 C -0.11 -1.51 9.96 -41.21 -0.41 -1.92 16 6 C -0.09 -1.24 4.29 -106.25 -0.46 -1.69 16 7 C -0.09 -1.18 5.34 -29.03 -0.16 -1.34 16 8 C 0.50 9.52 7.53 -10.98 -0.08 9.44 16 9 O -0.55 -12.55 15.70 5.56 0.09 -12.46 16 10 N -0.71 -14.14 5.07 -54.94 -0.28 -14.42 16 11 C 0.24 5.90 2.16 -69.09 -0.15 5.75 16 12 H 0.04 1.03 6.15 -51.93 -0.32 0.71 16 13 C -0.16 -3.57 9.20 37.16 0.34 -3.23 16 14 C -0.62 -16.83 8.95 -34.44 -0.31 -17.14 16 15 H 0.06 1.74 7.96 -52.48 -0.42 1.32 16 16 C 0.05 1.28 5.19 -17.82 -0.09 1.19 16 17 N -0.89 -26.34 13.70 55.43 0.76 -25.58 16 18 Si 1.03 25.23 26.44 -169.99 -4.50 20.73 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.38 6.14 56.52 0.35 -6.03 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 1.11 7.19 -51.93 -0.37 0.74 16 25 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 27 H 0.10 1.15 7.51 -51.92 -0.39 0.76 16 28 H 0.10 1.11 8.11 -51.93 -0.42 0.69 16 29 H 0.39 6.88 8.52 -40.82 -0.35 6.53 16 30 H 0.06 1.38 5.47 -51.93 -0.28 1.09 16 31 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.27 7.88 8.73 -40.82 -0.36 7.53 16 LS Contribution 293.06 15.07 4.42 4.42 Total: -1.00 -31.84 293.06 -7.18 -39.03 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -4.30 Total: 4.23 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -0.87 Total: -14.40 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.48 Total: -40.00 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -4.50 Total: 20.73 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.51 Total: -1.54 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.84 -7.18 -39.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330952066.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.207 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds