Wall clock time and date at job start Sun Mar 29 2020 23:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47131 * 2 1 4 4 C 1.50693 * 109.47081 * 239.99981 * 2 1 3 5 5 C 1.37708 * 123.35223 * 54.41824 * 4 2 1 6 6 C 1.33648 * 115.07024 * 180.02562 * 5 4 2 7 7 S 1.70613 * 110.95745 * 359.97438 * 6 5 4 8 8 C 1.36391 * 123.34824 * 234.12332 * 4 2 1 9 9 C 1.46992 * 125.44807 * 359.97438 * 8 4 2 10 10 O 1.35339 * 119.99721 * 5.70167 * 9 8 4 11 11 N 1.30427 * 120.00290 * 185.70106 * 9 8 4 12 12 C 1.46498 * 120.00374 * 174.74944 * 11 9 8 13 13 C 1.50693 * 109.47581 * 115.61775 * 12 11 9 14 14 H 1.08010 * 119.99588 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00409 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00307 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99912 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47504 * 90.00046 * 17 15 13 19 19 H 1.48507 * 109.46805 * 209.99947 * 17 15 13 20 20 H 1.48502 * 109.47140 * 329.99691 * 17 15 13 21 21 H 1.09001 * 109.47160 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47255 * 60.00616 * 1 2 3 23 23 H 1.09000 * 109.47291 * 300.00278 * 1 2 3 24 24 H 1.09004 * 109.46986 * 119.99818 * 2 1 3 25 25 H 1.09000 * 109.47260 * 59.99703 * 3 2 1 26 26 H 1.08990 * 109.47257 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46576 * 300.00373 * 3 2 1 28 28 H 1.07989 * 122.46097 * 359.97438 * 5 4 2 29 29 H 1.08005 * 124.51463 * 180.02562 * 6 5 4 30 30 H 0.96692 * 113.99899 * 95.07792 * 10 9 8 31 31 H 1.08996 * 109.47293 * 235.62422 * 12 11 9 32 32 H 1.09007 * 109.47043 * 355.62009 * 12 11 9 33 33 H 0.96991 * 120.00422 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.6536 -0.3687 -2.5095 6 6 2.1996 -1.1094 -3.4787 7 16 3.2377 -2.2967 -2.8280 8 6 2.9117 -1.7520 -1.1883 9 6 3.4921 -2.3289 0.0328 10 8 3.0750 -1.9016 1.2474 11 7 4.4090 -3.2524 -0.0541 12 6 5.0695 -3.7452 1.1571 13 6 4.7356 -5.2014 1.3543 14 1 4.0956 -5.7092 0.6478 15 6 5.2470 -5.8855 2.4366 16 7 6.0267 -5.2675 3.2967 17 14 4.8335 -7.6908 2.6807 18 1 5.8456 -8.5284 1.9884 19 1 4.8374 -8.0077 4.1315 20 1 3.4889 -7.9714 2.1163 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3634 0.5139 0.8899 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8899 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 0.9654 0.4379 -2.7143 29 1 2.0097 -0.9738 -4.5333 30 1 2.3792 -2.4472 1.6386 31 1 6.1486 -3.6305 1.0547 32 1 4.7234 -3.1733 2.0181 33 1 6.3861 -5.7486 4.0582 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331224311.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:38:08 Heat of formation + Delta-G solvation = -29.026410 kcal Electronic energy + Delta-G solvation = -16230.078629 eV Core-core repulsion = 13574.573665 eV Total energy + Delta-G solvation = -2655.504964 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46434 -38.84859 -35.81181 -34.89542 -34.16110 -31.20121 -28.90546 -27.89124 -25.90578 -24.33785 -22.54887 -21.92403 -19.95663 -18.60790 -18.01375 -17.77578 -16.67707 -16.59027 -16.03737 -15.41126 -14.93336 -14.61393 -14.53358 -14.30135 -13.86675 -13.41070 -13.39324 -12.99266 -12.87930 -12.72841 -12.64705 -12.22635 -12.14538 -12.01230 -11.93880 -11.44367 -11.05824 -10.93479 -10.80353 -10.32267 -9.28507 -9.25314 -8.29868 -6.46040 -0.31365 0.65364 1.23238 1.29651 1.36984 1.38734 1.50039 1.96652 2.34172 2.94155 3.03090 3.61953 3.97575 4.20473 4.37791 4.41794 4.59238 4.73188 4.87442 4.90158 4.96448 5.06630 5.07217 5.16250 5.21772 5.31307 5.34293 5.48227 5.55468 5.59760 5.81492 5.95402 6.38034 6.62945 7.10169 7.30339 8.79553 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.027320 B = 0.005599 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.650239 B = 4999.409392 C = 5532.719658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.068 4.068 3 C -0.133 4.133 4 C -0.042 4.042 5 C -0.144 4.144 6 C -0.237 4.237 7 S 0.210 5.790 8 C -0.221 4.221 9 C 0.372 3.628 10 O -0.523 6.523 11 N -0.536 5.536 12 C 0.188 3.812 13 C -0.538 4.538 14 H 0.054 0.946 15 C 0.009 3.991 16 N -0.927 5.927 17 Si 0.978 3.022 18 H -0.271 1.271 19 H -0.274 1.274 20 H -0.265 1.265 21 H 0.047 0.953 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.094 0.906 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.068 0.932 28 H 0.167 0.833 29 H 0.197 0.803 30 H 0.407 0.593 31 H 0.012 0.988 32 H 0.000 1.000 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.130 11.515 -10.735 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.088 4.088 3 C -0.190 4.190 4 C -0.059 4.059 5 C -0.175 4.175 6 C -0.375 4.375 7 S 0.478 5.522 8 C -0.340 4.340 9 C 0.145 3.855 10 O -0.331 6.331 11 N -0.262 5.262 12 C 0.060 3.940 13 C -0.577 4.577 14 H 0.073 0.927 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.801 3.199 18 H -0.196 1.196 19 H -0.199 1.199 20 H -0.190 1.190 21 H 0.066 0.934 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.112 0.888 25 H 0.088 0.912 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.184 0.816 29 H 0.215 0.785 30 H 0.267 0.733 31 H 0.030 0.970 32 H 0.018 0.982 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.201 10.200 -11.790 19.196 hybrid contribution -1.031 0.070 1.892 2.155 sum -12.232 10.270 -9.898 18.790 Atomic orbital electron populations 1.21773 0.92722 1.01762 1.02882 1.20387 0.96912 0.96334 0.95160 1.21725 1.00007 0.94552 1.02759 1.19742 0.94841 0.93901 0.97391 1.19963 1.04145 1.03372 0.90016 1.25649 1.04051 1.01925 1.05856 1.83499 1.42303 1.31640 0.94734 1.23061 1.09006 1.06161 0.95803 1.21130 0.92353 0.88624 0.83431 1.84563 1.59933 1.56919 1.31688 1.72578 1.10778 1.07955 1.34918 1.19396 0.93080 0.95397 0.86091 1.21282 1.31448 0.95210 1.09712 0.92738 1.25964 0.94334 1.03889 0.94878 1.70075 1.33448 1.38861 1.14206 0.85267 0.78980 0.77986 0.77676 1.19597 1.19876 1.18963 0.93408 0.91288 0.91257 0.88818 0.91238 0.94725 0.91267 0.81554 0.78546 0.73311 0.97033 0.98155 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.98 71.98 0.65 -1.76 16 2 C -0.07 -1.60 3.09 -11.54 -0.04 -1.64 16 3 C -0.13 -2.77 9.09 71.98 0.65 -2.12 16 4 C -0.04 -1.12 4.72 -20.42 -0.10 -1.21 16 5 C -0.14 -3.04 9.19 21.10 0.19 -2.85 16 6 C -0.24 -4.90 10.92 66.78 0.73 -4.17 16 7 S 0.21 6.11 22.86 -56.49 -1.29 4.82 16 8 C -0.22 -7.54 6.45 24.13 0.16 -7.38 16 9 C 0.37 15.63 7.75 87.20 0.68 16.31 16 10 O -0.52 -20.18 8.75 -86.28 -0.75 -20.93 16 11 N -0.54 -27.02 10.31 -459.66 -4.74 -31.76 16 12 C 0.19 10.95 6.08 85.63 0.52 11.47 16 13 C -0.54 -32.26 9.39 25.60 0.24 -32.02 16 14 H 0.05 3.25 7.81 -2.91 -0.02 3.22 16 15 C 0.01 0.51 5.46 84.65 0.46 0.97 16 16 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 17 Si 0.98 44.81 29.54 68.60 2.03 46.84 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 21 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.07 1.01 7.49 -2.39 -0.02 0.99 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 24 H 0.09 2.62 4.69 -2.38 -0.01 2.61 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.03 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.17 8.01 -2.39 -0.02 1.15 16 28 H 0.17 2.46 7.66 -2.92 -0.02 2.43 16 29 H 0.20 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.41 13.05 9.06 -74.06 -0.67 12.38 16 31 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.00 0.03 6.77 -2.38 -0.02 0.01 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -70.85 295.74 0.12 -70.73 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.45 Total: 11.06 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 4.15 Total: -24.40 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -4.45 Total: -88.12 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.75 Total: -20.93 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 6.11 SS G_CDS: -1.29 Total: 4.82 kcal Total: -70.85 0.12 -70.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331224311.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.704 kcal (2) G-P(sol) polarization free energy of solvation -70.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds