Wall clock time and date at job start Sun Mar 29 2020 23:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46857 * 2 1 4 4 C 1.37447 * 122.44479 * 265.02100 * 3 2 1 5 5 C 1.36764 * 113.28318 * 180.02562 * 4 3 2 6 6 C 1.46453 * 125.46778 * 179.97438 * 5 4 3 7 7 O 1.21748 * 119.99589 * 0.38771 * 6 5 4 8 8 N 1.34774 * 120.00550 * 180.38530 * 6 5 4 9 9 C 1.46502 * 119.99489 * 4.37523 * 8 6 5 10 10 C 1.36874 * 120.00513 * 184.37234 * 8 6 5 11 11 H 1.08006 * 119.99967 * 30.30713 * 10 8 6 12 12 C 1.39002 * 120.00520 * 210.30917 * 10 8 6 13 13 N 1.31405 * 120.00440 * 216.29131 * 12 10 8 14 14 Si 1.86802 * 119.99991 * 36.28478 * 12 10 8 15 15 H 1.48502 * 109.46963 * 93.13911 * 14 12 10 16 16 H 1.48496 * 109.47228 * 213.13975 * 14 12 10 17 17 H 1.48500 * 109.47084 * 333.13842 * 14 12 10 18 18 S 1.75838 * 109.07174 * 359.97438 * 5 4 3 19 19 C 1.33845 * 122.44757 * 84.73354 * 3 2 1 20 20 C 1.50699 * 124.51534 * 359.97438 * 19 3 2 21 21 H 1.09006 * 109.47013 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47314 * 300.00223 * 1 2 3 23 23 H 1.09001 * 109.46984 * 60.00317 * 1 2 3 24 24 H 1.08990 * 109.47468 * 239.99632 * 2 1 3 25 25 H 1.09008 * 109.46845 * 119.99289 * 2 1 3 26 26 H 1.07999 * 123.36011 * 0.02562 * 4 3 2 27 27 H 1.08997 * 109.47183 * 55.87020 * 9 8 6 28 28 H 1.09003 * 109.46996 * 175.86853 * 9 8 6 29 29 H 1.09003 * 109.47358 * 295.86811 * 9 8 6 30 30 H 0.96999 * 120.00388 * 179.97438 * 13 12 10 31 31 H 1.09002 * 109.46715 * 90.00393 * 20 19 3 32 32 H 1.09002 * 109.47186 * 209.99975 * 20 19 3 33 33 H 1.08995 * 109.47220 * 330.00367 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3730 2.0825 -1.1556 5 6 2.8057 3.3616 -0.9386 6 6 3.2345 4.3013 -1.9768 7 8 3.2164 3.9653 -3.1469 8 7 3.6491 5.5378 -1.6371 9 6 3.7623 5.9101 -0.2247 10 6 3.9646 6.4457 -2.6116 11 1 3.4625 6.4088 -3.5671 12 6 4.9312 7.4154 -2.3716 13 7 4.7886 8.6229 -2.8699 14 14 6.4330 7.0020 -1.3404 15 1 7.5402 6.5685 -2.2301 16 1 6.8541 8.2031 -0.5755 17 1 6.0986 5.9059 -0.3961 18 16 2.7646 3.6971 0.7870 19 6 2.1739 2.1324 1.1247 20 6 1.8568 1.6190 2.5056 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8898 25 1 1.8933 -0.5138 0.8901 26 1 2.3057 1.6368 -2.1370 27 1 4.4171 5.2040 0.2858 28 1 4.1789 6.9143 -0.1460 29 1 2.7750 5.8892 0.2368 30 1 5.4630 9.2996 -2.7022 31 1 2.7451 1.1539 2.9331 32 1 1.5411 2.4487 3.1381 33 1 1.0551 0.8832 2.4445 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334407421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:36:57 Heat of formation + Delta-G solvation = -21.209272 kcal Electronic energy + Delta-G solvation = -16508.902875 eV Core-core repulsion = 13853.736888 eV Total energy + Delta-G solvation = -2655.165987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68274 -39.43837 -36.82506 -34.38297 -33.66274 -32.28978 -29.00066 -28.18444 -26.53770 -24.71263 -23.72061 -20.96802 -19.34900 -19.15255 -18.78973 -17.45323 -16.81823 -16.42354 -16.09588 -15.31765 -14.98758 -14.87766 -14.65641 -14.33404 -14.16049 -14.02496 -13.55324 -13.47032 -13.19684 -12.82615 -12.76246 -12.64897 -12.47412 -12.28233 -11.78027 -11.75927 -11.19900 -11.14791 -10.65531 -10.03065 -9.42688 -9.21796 -8.71166 -6.09833 -0.34716 0.60956 1.11115 1.19450 1.31252 1.41842 1.50675 2.10084 2.25186 2.56918 2.92338 3.81332 3.95769 4.10068 4.22451 4.24921 4.36491 4.47097 4.56963 4.62002 4.73682 4.79178 4.81671 5.02538 5.03994 5.15084 5.19628 5.37847 5.41666 5.54071 5.66442 5.94285 6.39866 6.81208 7.14502 7.73098 8.45263 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.037222 B = 0.006491 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.056879 B = 4312.672375 C = 4739.639911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.060 4.060 3 C -0.128 4.128 4 C -0.073 4.073 5 C -0.279 4.279 6 C 0.506 3.494 7 O -0.621 6.621 8 N -0.457 5.457 9 C 0.054 3.946 10 C -0.359 4.359 11 H 0.050 0.950 12 C 0.035 3.965 13 N -0.870 5.870 14 Si 0.920 3.080 15 H -0.285 1.285 16 H -0.253 1.253 17 H -0.231 1.231 18 S 0.236 5.764 19 C -0.223 4.223 20 C -0.081 4.081 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.038 0.962 24 H 0.067 0.933 25 H 0.091 0.909 26 H 0.130 0.870 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.288 0.712 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.359 -13.311 17.081 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.139 4.139 4 C -0.107 4.107 5 C -0.399 4.399 6 C 0.297 3.703 7 O -0.509 6.509 8 N -0.175 5.175 9 C -0.091 4.091 10 C -0.486 4.486 11 H 0.068 0.932 12 C -0.172 4.172 13 N -0.504 5.504 14 Si 0.740 3.260 15 H -0.212 1.212 16 H -0.177 1.177 17 H -0.154 1.154 18 S 0.506 5.494 19 C -0.342 4.342 20 C -0.139 4.139 21 H 0.094 0.906 22 H 0.080 0.920 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.110 0.890 26 H 0.148 0.852 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.950 -11.940 17.412 21.479 hybrid contribution 0.363 -0.783 -1.738 1.940 sum -3.586 -12.723 15.674 20.504 Atomic orbital electron populations 1.21733 0.94231 1.02449 1.01692 1.20279 0.96411 0.89756 1.03457 1.18728 1.05177 0.99534 0.90461 1.20643 0.97802 0.92136 1.00143 1.24520 1.16667 1.00400 0.98341 1.17548 0.83693 0.81274 0.87749 1.90617 1.61699 1.77485 1.21128 1.43603 1.58010 1.09615 1.06321 1.22332 1.02888 1.02337 0.81494 1.18579 1.24105 1.08279 0.97661 0.93226 1.25977 0.99839 0.92936 0.98452 1.70009 1.34229 1.01872 1.44278 0.86318 0.79203 0.80676 0.79759 1.21174 1.17699 1.15392 1.83126 1.59933 1.10058 0.96284 1.24956 1.06816 1.00988 1.01423 1.20495 1.03339 1.02056 0.88007 0.90573 0.92049 0.94290 0.91384 0.89031 0.85240 0.89964 0.89332 0.89940 0.90216 0.89253 0.90129 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.82 71.98 0.71 -1.81 16 2 C -0.06 -1.19 5.54 29.85 0.17 -1.02 16 3 C -0.13 -3.49 5.04 -21.05 -0.11 -3.60 16 4 C -0.07 -2.66 9.78 21.74 0.21 -2.45 16 5 C -0.28 -11.46 6.32 24.07 0.15 -11.31 16 6 C 0.51 26.77 7.59 86.38 0.66 27.42 16 7 O -0.62 -38.49 16.65 -4.50 -0.07 -38.57 16 8 N -0.46 -23.82 2.67 -663.69 -1.77 -25.59 16 9 C 0.05 2.12 6.64 127.77 0.85 2.97 16 10 C -0.36 -21.69 9.33 84.09 0.78 -20.90 16 11 H 0.05 3.49 7.80 -2.91 -0.02 3.47 16 12 C 0.04 1.96 4.81 84.94 0.41 2.37 16 13 N -0.87 -49.87 13.96 21.67 0.30 -49.56 16 14 Si 0.92 40.22 26.46 68.60 1.82 42.04 16 15 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 17 H -0.23 -9.12 5.27 99.48 0.52 -8.60 16 18 S 0.24 6.88 17.51 -56.49 -0.99 5.89 16 19 C -0.22 -5.41 6.28 24.69 0.15 -5.26 16 20 C -0.08 -1.20 9.71 71.24 0.69 -0.51 16 21 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.06 0.99 7.21 -2.39 -0.02 0.97 16 23 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 25 H 0.09 1.40 7.48 -2.38 -0.02 1.38 16 26 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 27 H 0.08 2.87 5.61 -6.92 -0.04 2.83 16 28 H 0.09 3.48 5.24 -2.39 -0.01 3.47 16 29 H 0.08 2.83 6.35 -8.87 -0.06 2.77 16 30 H 0.29 14.82 8.31 -92.71 -0.77 14.05 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.09 1.10 6.37 -2.39 -0.02 1.08 16 Total: -1.00 -74.66 280.67 4.82 -69.84 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.87 Total: 10.05 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.67 Total: -14.10 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -1.47 Total: -75.15 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -0.07 Total: -38.57 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 1.82 Total: 42.04 kcal Atomic # 16 Polarization: 6.88 SS G_CDS: -0.99 Total: 5.89 kcal Total: -74.66 4.82 -69.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334407421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.630 kcal (2) G-P(sol) polarization free energy of solvation -74.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds