Wall clock time and date at job start Sun Mar 29 2020 23:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47308 * 2 1 4 4 C 1.50704 * 109.47042 * 119.99940 * 2 1 3 5 5 C 1.33845 * 124.51768 * 119.99258 * 4 2 1 6 6 C 1.37443 * 115.11120 * 179.97438 * 5 4 2 7 7 C 1.36767 * 113.27733 * 0.02562 * 6 5 4 8 8 C 1.46462 * 125.46262 * 180.02562 * 7 6 5 9 9 O 1.21741 * 120.00119 * 7.31948 * 8 7 6 10 10 N 1.34781 * 119.99951 * 187.31686 * 8 7 6 11 11 C 1.46505 * 120.00019 * 5.32987 * 10 8 7 12 12 C 1.36881 * 119.99937 * 185.32784 * 10 8 7 13 13 H 1.07994 * 120.00020 * 338.49757 * 12 10 8 14 14 C 1.39005 * 120.00092 * 158.49876 * 12 10 8 15 15 N 1.31403 * 119.99675 * 342.44051 * 14 12 10 16 16 Si 1.86797 * 120.00166 * 162.44301 * 14 12 10 17 17 H 1.48501 * 109.47203 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.46888 * 120.00186 * 16 14 12 19 19 H 1.48501 * 109.46993 * 239.99846 * 16 14 12 20 20 S 1.70622 * 124.51414 * 299.97729 * 4 2 1 21 21 H 1.08997 * 109.47512 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46723 * 300.00338 * 1 2 3 23 23 H 1.09001 * 109.47078 * 59.99672 * 1 2 3 24 24 H 1.08994 * 109.47283 * 239.99397 * 2 1 3 25 25 H 1.09004 * 109.46940 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.46951 * 299.99900 * 3 2 1 27 27 H 1.09002 * 109.47504 * 60.00140 * 3 2 1 28 28 H 1.07997 * 122.44378 * 359.71644 * 5 4 2 29 29 H 1.07994 * 123.36568 * 180.02562 * 6 5 4 30 30 H 1.09004 * 109.47104 * 36.02172 * 11 10 8 31 31 H 1.08997 * 109.47116 * 156.01866 * 11 10 8 32 32 H 1.08997 * 109.46909 * 276.02324 * 11 10 8 33 33 H 0.97001 * 120.00055 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8049 -1.8033 1.2131 6 6 3.1515 -2.2924 2.4499 7 6 2.6349 -1.5617 3.4842 8 6 2.8356 -1.8437 4.9073 9 8 3.6157 -2.7126 5.2516 10 7 2.1568 -1.1412 5.8359 11 6 1.1335 -0.1778 5.4221 12 6 2.4233 -1.3278 7.1654 13 1 2.8948 -2.2405 7.4987 14 6 2.0871 -0.3427 8.0867 15 7 1.8415 0.8820 7.6787 16 14 1.9846 -0.7599 9.9046 17 1 2.3035 -2.1968 10.1015 18 1 2.9570 0.0714 10.6588 19 1 0.6113 -0.4858 10.3986 20 16 1.6923 -0.2285 2.8316 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9564 0.8900 28 1 3.1287 -2.2693 0.2942 29 1 3.7699 -3.1663 2.5910 30 1 0.6091 -0.5586 4.5457 31 1 0.4228 -0.0309 6.2354 32 1 1.6073 0.7729 5.1774 33 1 1.6066 1.5694 8.3215 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335299811.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:37:57 Heat of formation + Delta-G solvation = -24.509937 kcal Electronic energy + Delta-G solvation = -16457.726124 eV Core-core repulsion = 13802.417009 eV Total energy + Delta-G solvation = -2655.309115 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50681 -38.96718 -36.80308 -35.85005 -33.81718 -30.20776 -28.34583 -27.97946 -26.98443 -25.21086 -22.39327 -21.92433 -19.57918 -19.13248 -18.65440 -17.02628 -16.73685 -16.20305 -15.97752 -15.55598 -15.24346 -14.58179 -14.51259 -14.11847 -13.93400 -13.73756 -13.35612 -13.32235 -13.02929 -12.86021 -12.69179 -12.47973 -12.18759 -12.10606 -12.00956 -11.94662 -11.29327 -10.97691 -10.64320 -9.91058 -9.47650 -9.30543 -8.46716 -6.04327 -0.29524 0.65305 1.18875 1.34905 1.40921 1.55674 1.60052 2.23122 2.36267 2.93419 3.03203 3.72290 3.97698 4.06667 4.28537 4.33976 4.45041 4.58133 4.74469 4.77900 4.81731 4.91011 5.00430 5.10597 5.15356 5.18886 5.34146 5.38049 5.40327 5.43527 5.58458 5.99684 6.36154 7.02694 7.26795 7.86453 8.57235 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.036637 B = 0.006078 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.077915 B = 4605.709775 C = 5136.062356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.023 4.023 3 C -0.148 4.148 4 C -0.220 4.220 5 C -0.155 4.155 6 C -0.084 4.084 7 C -0.280 4.280 8 C 0.491 3.509 9 O -0.634 6.634 10 N -0.446 5.446 11 C 0.104 3.896 12 C -0.350 4.350 13 H 0.076 0.924 14 C 0.003 3.997 15 N -0.884 5.884 16 Si 0.996 3.004 17 H -0.274 1.274 18 H -0.272 1.272 19 H -0.259 1.259 20 S 0.244 5.756 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.101 0.899 25 H 0.053 0.947 26 H 0.084 0.916 27 H 0.049 0.951 28 H 0.162 0.838 29 H 0.135 0.865 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.772 3.798 -14.476 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.043 4.043 3 C -0.206 4.206 4 C -0.339 4.339 5 C -0.184 4.184 6 C -0.118 4.118 7 C -0.400 4.400 8 C 0.282 3.718 9 O -0.524 6.524 10 N -0.162 5.162 11 C -0.040 4.040 12 C -0.478 4.478 13 H 0.093 0.907 14 C -0.200 4.200 15 N -0.521 5.521 16 Si 0.818 3.182 17 H -0.199 1.199 18 H -0.197 1.197 19 H -0.184 1.184 20 S 0.512 5.488 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.180 0.820 29 H 0.153 0.847 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.077 0.923 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.322 4.798 -13.581 15.730 hybrid contribution 1.184 -1.515 0.520 1.991 sum -5.139 3.283 -13.061 14.414 Atomic orbital electron populations 1.21942 0.93191 1.02431 1.02926 1.19832 0.96449 0.95672 0.92324 1.21951 1.01284 0.94462 1.02896 1.25227 1.04138 1.01774 1.02779 1.19978 1.02355 0.98127 0.97964 1.20774 0.99674 0.99976 0.91348 1.24725 1.12651 1.05835 0.96764 1.17503 0.83360 0.86011 0.84896 1.90569 1.42173 1.37407 1.82250 1.43697 1.31356 1.35388 1.05755 1.21689 0.91524 0.91980 0.98842 1.19708 1.42350 1.03735 0.81973 0.90651 1.26180 0.95505 0.93576 1.04787 1.70062 1.43554 1.01030 1.37493 0.84862 0.78854 0.78418 0.76076 1.19858 1.19726 1.18385 1.83357 1.45587 1.25873 0.93935 0.92503 0.93018 0.89771 0.88042 0.92805 0.89681 0.93141 0.82034 0.84733 0.91706 0.89991 0.92251 0.90943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.08 71.98 0.65 -1.83 16 2 C -0.02 -0.43 3.25 -11.54 -0.04 -0.47 16 3 C -0.15 -2.63 9.08 71.98 0.65 -1.98 16 4 C -0.22 -6.01 4.95 24.69 0.12 -5.88 16 5 C -0.15 -4.54 9.95 21.08 0.21 -4.33 16 6 C -0.08 -3.19 10.02 21.74 0.22 -2.98 16 7 C -0.28 -12.33 6.20 24.07 0.15 -12.18 16 8 C 0.49 27.27 7.58 86.38 0.65 27.92 16 9 O -0.63 -39.86 16.52 -4.48 -0.07 -39.93 16 10 N -0.45 -24.66 3.01 -663.67 -2.00 -26.66 16 11 C 0.10 4.80 7.15 127.77 0.91 5.71 16 12 C -0.35 -20.56 9.29 84.09 0.78 -19.77 16 13 H 0.08 4.75 7.38 -2.91 -0.02 4.73 16 14 C 0.00 0.16 4.93 84.94 0.42 0.58 16 15 N -0.88 -46.26 10.95 21.67 0.24 -46.02 16 16 Si 1.00 41.95 29.59 68.60 2.03 43.98 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 20 S 0.24 8.15 17.10 -56.49 -0.97 7.18 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.05 0.95 7.90 -2.39 -0.02 0.93 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.10 1.60 8.07 -2.39 -0.02 1.58 16 25 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 0.99 7.90 -2.39 -0.02 0.97 16 28 H 0.16 3.62 8.06 -2.91 -0.02 3.60 16 29 H 0.13 5.22 8.06 -2.91 -0.02 5.20 16 30 H 0.07 2.59 5.08 -18.17 -0.09 2.50 16 31 H 0.08 3.89 6.60 -2.39 -0.02 3.87 16 32 H 0.06 2.73 7.33 -2.39 -0.02 2.71 16 33 H 0.28 13.44 8.31 -92.71 -0.77 12.67 16 Total: -1.00 -69.75 287.24 4.99 -64.76 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.02 Total: 11.90 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: 4.74 Total: -15.21 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -1.76 Total: -72.68 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.07 Total: -39.93 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Atomic # 16 Polarization: 8.15 SS G_CDS: -0.97 Total: 7.18 kcal Total: -69.75 4.99 -64.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335299811.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.247 kcal (2) G-P(sol) polarization free energy of solvation -69.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds