Wall clock time and date at job start Sun Mar 29 2020 23:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47118 * 29.99347 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37875 * 119.99408 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99491 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00542 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47242 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.47289 * 180.02562 * 10 9 7 12 12 C 1.34774 * 120.00072 * 180.02562 * 11 10 9 13 13 O 1.21695 * 120.00046 * 359.97438 * 12 11 10 14 14 C 1.46676 * 119.99656 * 179.97438 * 12 11 10 15 15 C 1.37877 * 126.23218 * 179.70794 * 14 12 11 16 16 C 1.39831 * 107.08443 * 179.88545 * 15 14 12 17 17 N 1.48021 * 126.06562 * 180.11673 * 16 15 14 18 18 O 1.21806 * 119.99636 * 180.29756 * 17 16 15 19 19 O 1.21799 * 119.99967 * 0.29666 * 17 16 15 20 20 C 1.35447 * 107.86620 * 0.38792 * 16 15 14 21 21 N 1.35530 * 108.87296 * 359.76019 * 20 16 15 22 22 H 0.97001 * 125.68031 * 179.97438 * 21 20 16 23 23 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46948 * 60.00235 * 9 7 2 25 25 H 1.08996 * 109.47390 * 299.99877 * 9 7 2 26 26 H 1.09001 * 109.47289 * 60.00043 * 10 9 7 27 27 H 1.09004 * 109.47261 * 300.00299 * 10 9 7 28 28 H 0.97001 * 119.99251 * 0.02562 * 11 10 9 29 29 H 1.08003 * 126.45497 * 0.02562 * 15 14 12 30 30 H 1.08005 * 125.56711 * 179.78219 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9309 -0.0001 12 6 2.1864 -6.0981 0.0003 13 8 3.4034 -6.0981 0.0007 14 6 1.4530 -7.3683 0.0003 15 6 2.0086 -8.6301 -0.0050 16 6 0.9508 -9.5447 -0.0002 17 7 1.0742 -11.0198 -0.0008 18 8 0.0738 -11.7146 -0.0018 19 8 2.1762 -11.5387 -0.0004 20 6 -0.2067 -8.8413 -0.0010 21 7 0.0846 -7.5177 -0.0007 22 1 -0.5633 -6.7958 -0.0015 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5568 0.8903 26 1 2.8718 -3.6044 0.8905 27 1 2.8718 -3.6044 -0.8894 28 1 0.5426 -4.9307 -0.0008 29 1 3.0622 -8.8674 -0.0095 30 1 -1.1998 -9.2659 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342342735.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:38 Heat of formation + Delta-G solvation = -7.542442 kcal Electronic energy + Delta-G solvation = -17311.081961 eV Core-core repulsion = 14110.215397 eV Total energy + Delta-G solvation = -3200.866563 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.60071 -41.51888 -39.13275 -36.55850 -35.26717 -33.16728 -32.35802 -30.70462 -29.53208 -26.55501 -25.16303 -23.13259 -21.59339 -21.13455 -20.80496 -19.41283 -18.55786 -17.59936 -17.43940 -16.66194 -16.15179 -15.67847 -15.39510 -14.60181 -14.58382 -14.15034 -13.65440 -13.29826 -13.21367 -12.43409 -11.65712 -11.41075 -11.35984 -11.20055 -11.17802 -10.78915 -10.56280 -10.32265 -10.18745 -9.76387 -9.44032 -9.23829 -8.83215 -8.55432 -6.24240 -4.27763 0.13396 0.88042 1.22354 1.99625 2.35625 3.11303 3.15311 3.20356 3.27384 3.32009 4.11079 4.25306 4.29956 4.47884 4.89549 5.09394 5.13590 5.56439 5.75367 6.06839 6.09696 6.31018 6.40164 6.43799 6.53139 7.28602 7.38683 7.54527 7.61404 7.73025 8.05086 8.17255 8.77796 9.38318 10.87322 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.066118 B = 0.003326 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.380503 B = 8416.427664 C = 8819.361713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.716 5.716 12 C 0.578 3.422 13 O -0.522 6.522 14 C -0.020 4.020 15 C -0.060 4.060 16 C -0.133 4.133 17 N 0.064 4.936 18 O -0.176 6.176 19 O -0.161 6.161 20 C 0.118 3.882 21 N -0.512 5.512 22 H 0.438 0.562 23 H 0.263 0.737 24 H 0.022 0.978 25 H 0.023 0.977 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.392 0.608 29 H 0.175 0.825 30 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 -14.945 -0.009 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.563 4.563 8 H 0.079 0.921 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.365 5.365 12 C 0.363 3.637 13 O -0.398 6.398 14 C -0.133 4.133 15 C -0.085 4.085 16 C -0.225 4.225 17 N 0.582 4.418 18 O -0.388 6.388 19 O -0.377 6.377 20 C -0.026 4.026 21 N -0.110 5.110 22 H 0.279 0.721 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.041 0.959 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.193 0.807 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.225 -13.897 -0.004 14.266 hybrid contribution -0.504 0.869 -0.012 1.004 sum -3.729 -13.029 -0.016 13.552 Atomic orbital electron populations 1.69939 1.06145 1.27098 1.50103 1.24995 0.94921 0.99546 0.94745 0.86479 0.79855 0.82759 0.78307 1.20467 1.21094 1.19630 1.21012 0.93326 0.90193 1.51803 0.92084 1.19338 0.94159 0.91136 0.97849 1.21891 0.96181 0.80528 1.01521 1.46267 1.10138 1.06713 1.73356 1.16839 0.87016 0.81768 0.78123 1.90886 1.12167 1.86500 1.50240 1.20878 0.81588 0.95977 1.14851 1.21115 1.00062 0.88009 0.99316 1.20171 0.96346 0.80671 1.25296 1.42580 1.00384 1.01984 0.96878 1.94530 1.28241 1.61403 1.54633 1.94568 1.13836 1.75406 1.53883 1.21758 0.99569 0.82317 0.98997 1.42195 1.07808 1.07488 1.53474 0.72125 0.92717 0.95927 0.95907 0.91840 0.91852 0.77492 0.80709 0.78102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 13.29 55.43 0.74 -24.11 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.52 -13.71 9.11 -34.44 -0.31 -14.02 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 10 C 0.12 2.27 5.61 -4.04 -0.02 2.25 16 11 N -0.72 -10.44 5.55 -61.61 -0.34 -10.78 16 12 C 0.58 8.57 7.79 -12.86 -0.10 8.47 16 13 O -0.52 -9.76 16.88 5.19 0.09 -9.68 16 14 C -0.02 -0.23 7.06 -81.98 -0.58 -0.81 16 15 C -0.06 -0.71 10.38 -39.12 -0.41 -1.11 16 16 C -0.13 -1.44 7.11 -80.35 -0.57 -2.01 16 17 N 0.06 0.83 4.45 33.77 0.15 0.98 16 18 O -0.18 -2.27 19.03 -29.46 -0.56 -2.83 16 19 O -0.16 -2.31 19.05 -29.46 -0.56 -2.87 16 20 C 0.12 0.85 11.57 -16.91 -0.20 0.66 16 21 N -0.51 -3.66 5.99 -9.39 -0.06 -3.71 16 22 H 0.44 1.77 8.19 -40.82 -0.33 1.43 16 23 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.39 4.48 7.60 -40.82 -0.31 4.17 16 29 H 0.18 2.07 8.06 -52.48 -0.42 1.65 16 30 H 0.20 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 284.80 15.07 4.29 4.29 Total: -1.00 -32.22 284.80 -6.42 -38.64 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -2.72 Total: -0.47 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -2.43 Total: -4.92 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.49 Total: -37.62 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -1.03 Total: -15.38 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.22 -6.42 -38.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342342735.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.100 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds