Wall clock time and date at job start Sun Mar 29 2020 23:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86792 * 120.00012 * 2 1 4 4 H 1.48497 * 109.47343 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47325 * 300.00340 * 3 2 1 6 6 H 1.48499 * 109.47351 * 60.00223 * 3 2 1 7 7 C 1.38955 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99479 * 180.02562 * 7 2 1 9 9 N 1.37099 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99824 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99765 * 359.97438 * 10 9 7 12 12 C 1.50697 * 119.99927 * 179.97438 * 10 9 7 13 13 C 1.53008 * 109.47139 * 179.97438 * 12 10 9 14 14 O 1.42895 * 109.47006 * 179.97438 * 13 12 10 15 15 C 1.35951 * 116.99758 * 179.97438 * 14 13 12 16 16 C 1.38708 * 120.03040 * 0.28885 * 15 14 13 17 17 C 1.38147 * 119.96935 * 180.25012 * 16 15 14 18 18 C 1.38455 * 120.02958 * 359.46222 * 17 16 15 19 19 F 1.35101 * 119.97206 * 180.29906 * 18 17 16 20 20 C 1.38452 * 120.06193 * 0.28172 * 18 17 16 21 21 C 1.38156 * 120.03063 * 359.97438 * 20 18 17 22 22 H 0.97003 * 120.00129 * 359.97438 * 1 2 3 23 23 H 0.96998 * 119.99780 * 359.97438 * 9 7 2 24 24 H 1.08997 * 109.47470 * 60.00043 * 12 10 9 25 25 H 1.09003 * 109.47335 * 299.99268 * 12 10 9 26 26 H 1.09005 * 109.46539 * 60.00110 * 13 12 10 27 27 H 1.08995 * 109.46786 * 300.00247 * 13 12 10 28 28 H 1.07998 * 120.01328 * 0.02562 * 16 15 14 29 29 H 1.08002 * 119.98838 * 179.74746 * 17 16 15 30 30 H 1.07997 * 119.98751 * 179.97438 * 20 18 17 31 31 H 1.07999 * 120.02057 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2436 -4.8629 0.0000 13 6 2.2378 -6.0259 -0.0007 14 8 1.5233 -7.2634 0.0004 15 6 2.2637 -8.4036 -0.0006 16 6 3.6489 -8.3318 0.0034 17 6 4.4001 -9.4911 -0.0029 18 6 3.7708 -10.7245 -0.0019 19 9 4.5066 -11.8575 -0.0020 20 6 2.3883 -10.7977 -0.0005 21 6 1.6346 -9.6398 0.0004 22 1 -0.4850 0.8401 0.0004 23 1 0.3533 -2.3906 0.0002 24 1 0.6166 -4.9209 -0.8896 25 1 0.6173 -4.9205 0.8904 26 1 2.8651 -5.9681 0.8889 27 1 2.8638 -5.9681 -0.8911 28 1 4.1400 -7.3699 0.0077 29 1 5.4787 -9.4356 -0.0040 30 1 1.8987 -11.7603 -0.0002 31 1 0.5561 -9.6971 0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355735729.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:55 Heat of formation + Delta-G solvation = -123.999263 kcal Electronic energy + Delta-G solvation = -17200.161254 eV Core-core repulsion = 13974.324782 eV Total energy + Delta-G solvation = -3225.836472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.82482 -41.17500 -40.13548 -38.23979 -36.07615 -33.46758 -32.85113 -32.12298 -30.11356 -27.37778 -25.33287 -23.78453 -22.86176 -21.00918 -19.94043 -19.39313 -18.42901 -17.65293 -17.38475 -17.36233 -16.52774 -16.50727 -15.87505 -15.65016 -15.62491 -15.17305 -14.58266 -14.41255 -13.91350 -13.88326 -13.66794 -13.48919 -12.97677 -12.66660 -12.66259 -12.42167 -12.11047 -11.77835 -11.66727 -11.55868 -10.48442 -10.19501 -10.06673 -9.13390 -8.50146 -5.99632 0.15311 0.18452 1.35691 1.42418 1.56155 1.94226 1.97329 2.32291 2.55694 3.17348 3.30447 3.34878 3.66112 3.80978 3.88662 4.00413 4.11923 4.28063 4.33245 4.49537 4.67202 4.81279 4.83298 4.92111 5.11991 5.13032 5.25213 5.39360 5.70225 5.94901 6.30584 6.52536 7.06958 7.49063 8.02424 8.67233 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.066740 B = 0.003253 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.440069 B = 8606.203956 C = 9005.197012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.082 0.918 9 N -0.566 5.566 10 C 0.441 3.559 11 O -0.635 6.635 12 C -0.117 4.117 13 C 0.089 3.911 14 O -0.318 6.318 15 C 0.108 3.892 16 C -0.191 4.191 17 C -0.115 4.115 18 C 0.041 3.959 19 F -0.148 7.148 20 C -0.107 4.107 21 C -0.125 4.125 22 H 0.279 0.721 23 H 0.399 0.601 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.168 0.832 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.805 -17.704 0.006 17.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.100 0.900 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.524 6.524 12 C -0.157 4.157 13 C 0.013 3.987 14 O -0.232 6.232 15 C 0.062 3.938 16 C -0.210 4.210 17 C -0.134 4.134 18 C 0.021 3.979 19 F -0.126 7.126 20 C -0.125 4.125 21 C -0.144 4.144 22 H 0.089 0.911 23 H 0.233 0.767 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.156 0.844 29 H 0.168 0.832 30 H 0.186 0.814 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 1.266 -17.544 0.006 17.589 hybrid contribution 0.312 0.922 0.000 0.973 sum 1.578 -16.622 0.005 16.697 Atomic orbital electron populations 1.69675 1.06892 1.29449 1.49773 1.26077 0.96542 1.02534 0.95981 0.84852 0.78090 0.76944 0.78356 1.19646 1.19588 1.19578 1.19751 0.92850 0.83882 1.50199 0.90000 1.41922 1.09551 1.04671 1.64032 1.20486 0.87900 0.85991 0.82699 1.90505 1.15807 1.88232 1.57857 1.21208 0.98631 0.89349 1.06500 1.22278 0.93916 0.80154 1.02332 1.85977 1.35947 1.12779 1.88460 1.19368 0.90332 0.87129 0.96933 1.21339 0.93003 0.99978 1.06639 1.21122 1.01767 0.90336 1.00142 1.17774 0.90053 0.81980 1.08043 1.91470 1.77342 1.49320 1.94516 1.21216 0.91245 1.00330 0.99738 1.20557 1.01954 0.88028 1.03842 0.91140 0.76671 0.87146 0.87139 0.91728 0.91721 0.84410 0.83153 0.81404 0.82143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.53 13.05 21.66 0.28 -48.25 16 2 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 3 Si 0.99 41.93 29.55 68.60 2.03 43.95 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.34 -18.73 9.68 84.04 0.81 -17.92 16 8 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 9 N -0.57 -28.27 5.29 -306.98 -1.62 -29.89 16 10 C 0.44 20.16 7.78 87.66 0.68 20.84 16 11 O -0.64 -33.63 15.56 -3.09 -0.05 -33.68 16 12 C -0.12 -3.81 6.07 29.85 0.18 -3.63 16 13 C 0.09 2.71 4.03 71.98 0.29 3.00 16 14 O -0.32 -8.75 10.14 -92.99 -0.94 -9.69 16 15 C 0.11 2.67 6.69 22.50 0.15 2.82 16 16 C -0.19 -4.62 9.04 22.36 0.20 -4.41 16 17 C -0.11 -2.47 10.02 22.30 0.22 -2.25 16 18 C 0.04 0.85 7.30 22.37 0.16 1.02 16 19 F -0.15 -3.21 17.27 44.97 0.78 -2.43 16 20 C -0.11 -1.89 10.02 22.30 0.22 -1.66 16 21 C -0.13 -2.46 9.99 22.36 0.22 -2.23 16 22 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 23 H 0.40 18.88 7.90 -92.71 -0.73 18.15 16 24 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 25 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 26 H 0.06 2.05 7.61 -2.38 -0.02 2.03 16 27 H 0.06 2.05 7.63 -2.39 -0.02 2.03 16 28 H 0.14 3.42 6.30 -2.91 -0.02 3.40 16 29 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 31 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -63.62 283.63 4.53 -59.10 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.43 Total: 25.43 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 3.62 Total: -4.53 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -1.34 Total: -78.15 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -0.99 Total: -43.37 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.78 Total: -2.43 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -63.62 4.53 -59.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355735729.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.902 kcal (2) G-P(sol) polarization free energy of solvation -63.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds