Wall clock time and date at job start Sun Mar 29 2020 23:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30664 * 1 3 3 Si 1.86803 * 119.99942 * 2 1 4 4 H 1.48504 * 109.46768 * 239.99758 * 3 2 1 5 5 H 1.48498 * 109.47326 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 120.00035 * 3 2 1 7 7 C 1.40050 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 H 1.09004 * 109.47372 * 34.71852 * 12 11 9 14 14 C 1.52997 * 109.47036 * 274.72131 * 12 11 9 15 15 O 1.42903 * 109.47059 * 295.00261 * 14 12 11 16 16 C 1.50701 * 109.47114 * 154.72036 * 12 11 9 17 17 C 1.38265 * 119.98604 * 39.72864 * 16 12 11 18 18 C 1.38220 * 120.05358 * 179.72594 * 17 16 12 19 19 C 1.38224 * 120.02340 * 0.54240 * 18 17 16 20 20 C 1.38443 * 119.97237 * 359.73187 * 19 18 17 21 21 F 1.35101 * 120.02329 * 180.02562 * 20 19 18 22 22 C 1.38174 * 119.98705 * 219.99572 * 16 12 11 23 23 H 0.96996 * 120.00325 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 25 25 H 1.08997 * 109.47241 * 55.00267 * 14 12 11 26 26 H 1.09002 * 109.47280 * 175.00361 * 14 12 11 27 27 H 0.96700 * 113.99965 * 180.02562 * 15 14 12 28 28 H 1.08004 * 119.97407 * 359.96942 * 17 16 12 29 29 H 1.07996 * 119.99383 * 180.26734 * 18 17 16 30 30 H 1.08001 * 120.01533 * 179.70721 * 19 18 17 31 31 H 1.07998 * 120.01608 * 0.02562 * 22 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6963 -1.2125 5 1 1.2757 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0869 -1.2128 0.0001 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0005 12 6 1.2165 -4.9164 -0.0056 13 1 0.3057 -4.8073 -0.5944 14 6 0.8527 -5.3021 1.4296 15 8 2.0470 -5.5586 2.1712 16 6 2.0805 -5.9924 -0.6113 17 6 3.4320 -6.0373 -0.3230 18 6 4.2246 -7.0269 -0.8733 19 6 3.6690 -7.9662 -1.7215 20 6 2.3170 -7.9188 -2.0155 21 9 1.7727 -8.8367 -2.8440 22 6 1.5228 -6.9302 -1.4590 23 1 -0.4850 0.8400 -0.0004 24 1 2.9190 -3.6476 0.0002 25 1 0.3031 -4.4852 1.8972 26 1 0.2322 -6.1982 1.4188 27 1 1.8919 -5.8098 3.0920 28 1 3.8679 -5.3009 0.3359 29 1 5.2793 -7.0637 -0.6440 30 1 4.2894 -8.7366 -2.1552 31 1 0.4680 -6.8921 -1.6878 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357598554.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:46 Heat of formation + Delta-G solvation = -110.800380 kcal Electronic energy + Delta-G solvation = -18201.091233 eV Core-core repulsion = 14975.827108 eV Total energy + Delta-G solvation = -3225.264125 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.78631 -39.40971 -37.38356 -36.11105 -33.63684 -32.39896 -30.98426 -30.01294 -28.04600 -25.95211 -23.39658 -22.61919 -20.98206 -19.32008 -17.88918 -16.99808 -16.72609 -16.01110 -15.93279 -15.50106 -15.29119 -14.96340 -14.13662 -14.01626 -13.73729 -13.39623 -12.95370 -12.64006 -12.39953 -12.10967 -11.68936 -11.59753 -11.22558 -11.11647 -10.92222 -10.63196 -10.46168 -10.26567 -9.62490 -8.88343 -8.83248 -8.50241 -7.66186 -7.57997 -6.21003 -4.66268 1.32085 1.34383 3.15238 3.20156 3.21982 3.73005 4.08751 4.30538 4.53320 4.64602 4.81160 4.85839 4.98563 5.16335 5.41753 5.49358 5.61579 5.78117 5.86616 5.97770 6.03861 6.18525 6.26538 6.34564 6.49840 6.75451 7.03609 7.41664 7.88825 7.93475 8.06165 8.30748 9.00469 9.48852 10.56568 10.74597 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030131 B = 0.005216 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.039696 B = 5366.850856 C = 5461.698274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.583 6.583 11 N -0.752 5.752 12 C 0.194 3.806 13 H 0.099 0.901 14 C 0.071 3.929 15 O -0.565 6.565 16 C -0.043 4.043 17 C -0.097 4.097 18 C -0.096 4.096 19 C -0.162 4.162 20 C 0.090 3.910 21 F -0.146 7.146 22 C -0.149 4.149 23 H 0.269 0.731 24 H 0.383 0.617 25 H 0.060 0.940 26 H 0.039 0.961 27 H 0.369 0.631 28 H 0.134 0.866 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.435 -12.505 0.575 14.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.580 4.580 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.466 6.466 11 N -0.407 5.407 12 C 0.087 3.913 13 H 0.116 0.884 14 C -0.009 4.009 15 O -0.369 6.369 16 C -0.044 4.044 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.181 4.181 20 C 0.071 3.929 21 F -0.124 7.124 22 C -0.169 4.169 23 H 0.080 0.920 24 H 0.216 0.784 25 H 0.078 0.922 26 H 0.057 0.943 27 H 0.215 0.785 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.593 -12.255 -0.044 13.471 hybrid contribution 0.491 0.422 0.377 0.749 sum 6.084 -11.833 0.333 13.310 Atomic orbital electron populations 1.69999 1.07046 1.27401 1.35218 1.25694 0.94618 1.00262 0.92578 0.86431 0.79826 0.81005 0.79475 1.19275 1.20569 1.19269 1.20832 0.93598 0.89289 1.54292 0.91451 1.18233 0.87211 0.82358 0.76149 1.90594 1.14014 1.86754 1.55254 1.46180 1.08696 1.03677 1.82173 1.19526 0.95285 0.83483 0.92962 0.88372 1.22670 0.86510 0.98560 0.93110 1.86478 1.32201 1.91870 1.26376 1.19938 0.94657 0.95211 0.94564 1.21090 0.93148 0.98390 0.98867 1.20987 1.00023 0.94149 0.96223 1.21056 0.93347 1.01808 1.01914 1.17616 0.92134 0.89566 0.93560 1.91470 1.86364 1.64760 1.69832 1.21022 1.00701 0.95581 0.99566 0.92046 0.78392 0.92179 0.94287 0.78510 0.84809 0.85263 0.85297 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.73 11.83 55.55 0.66 -22.07 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 19.98 29.56 -169.99 -5.02 14.95 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.54 -15.17 9.54 -35.63 -0.34 -15.51 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.56 15.45 7.71 -12.99 -0.10 15.35 16 10 O -0.58 -18.24 14.68 5.20 0.08 -18.16 16 11 N -0.75 -16.57 4.97 -56.35 -0.28 -16.85 16 12 C 0.19 3.67 2.61 -69.08 -0.18 3.49 16 13 H 0.10 2.03 7.43 -51.93 -0.39 1.64 16 14 C 0.07 1.20 6.84 37.16 0.25 1.46 16 15 O -0.57 -8.57 12.06 -35.23 -0.42 -8.99 16 16 C -0.04 -0.69 4.83 -104.64 -0.50 -1.19 16 17 C -0.10 -1.41 8.06 -39.58 -0.32 -1.72 16 18 C -0.10 -1.18 10.04 -39.59 -0.40 -1.57 16 19 C -0.16 -2.02 10.03 -39.51 -0.40 -2.42 16 20 C 0.09 1.28 7.30 -39.42 -0.29 0.99 16 21 F -0.15 -2.07 17.27 2.25 0.04 -2.04 16 22 C -0.15 -2.24 9.65 -39.52 -0.38 -2.62 16 23 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 24 H 0.38 7.70 6.83 -40.82 -0.28 7.42 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.37 3.95 9.12 45.56 0.42 4.36 16 28 H 0.13 1.96 6.67 -52.48 -0.35 1.61 16 29 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.13 1.86 8.04 -52.49 -0.42 1.43 16 LS Contribution 280.42 15.07 4.23 4.23 Total: -1.00 -33.64 280.42 -5.74 -39.38 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -2.26 Total: 10.95 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.75 Total: -1.40 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.38 Total: -38.92 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.35 Total: -27.16 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.04 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.64 -5.74 -39.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357598554.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.418 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds