Wall clock time and date at job start Sun Mar 29 2020 23:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35737 * 116.99774 * 2 1 4 4 C 1.39288 * 120.84786 * 0.29754 * 3 2 1 5 5 C 1.37945 * 119.08950 * 180.23884 * 4 3 2 6 6 C 1.50706 * 119.58833 * 179.73232 * 5 4 3 7 7 N 1.31979 * 120.82612 * 359.45507 * 5 4 3 8 8 C 1.31947 * 121.86273 * 0.27910 * 7 5 4 9 9 C 1.50696 * 119.58728 * 180.02562 * 8 7 5 10 10 S 1.81402 * 109.47458 * 89.99852 * 9 8 7 11 11 C 1.81390 * 103.00267 * 179.97438 * 10 9 8 12 12 C 1.50707 * 109.47387 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99413 * 0.02562 * 12 11 10 14 14 C 1.37867 * 120.00234 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00055 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00178 * 359.97438 * 14 12 11 17 17 H 1.48492 * 109.47176 * 90.00116 * 16 14 12 18 18 H 1.48501 * 109.47160 * 210.00235 * 16 14 12 19 19 H 1.48494 * 109.46753 * 329.99912 * 16 14 12 20 20 C 1.37993 * 120.82129 * 359.97438 * 8 7 5 21 21 H 1.08996 * 109.47213 * 299.99736 * 1 2 3 22 22 H 1.09003 * 109.47294 * 60.00418 * 1 2 3 23 23 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 24 24 H 1.07997 * 120.45072 * 359.97438 * 4 3 2 25 25 H 1.08999 * 109.47015 * 269.73000 * 6 5 4 26 26 H 1.09000 * 109.46646 * 29.72153 * 6 5 4 27 27 H 1.09000 * 109.47248 * 149.72870 * 6 5 4 28 28 H 1.09004 * 109.47134 * 209.99512 * 9 8 7 29 29 H 1.09001 * 109.47338 * 330.00029 * 9 8 7 30 30 H 1.08997 * 109.47457 * 299.99572 * 11 10 9 31 31 H 1.08997 * 109.47361 * 59.99779 * 11 10 9 32 32 H 0.97003 * 120.00340 * 180.02562 * 15 14 12 33 33 H 1.07999 * 120.45158 * 180.02562 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3887 0.0062 5 6 1.9675 3.5980 0.0010 6 6 1.1765 4.8808 0.0015 7 7 3.2864 3.6457 0.0010 8 6 4.0230 2.5510 0.0005 9 6 5.5256 2.6652 0.0012 10 16 6.1280 2.7099 1.7117 11 6 7.9253 2.8459 1.5080 12 6 8.5823 2.8943 2.8634 13 1 7.9789 2.8474 3.7579 14 6 9.9536 2.9972 2.9615 15 7 10.5269 3.0400 4.1444 16 14 10.9975 3.0761 1.4144 17 1 11.1693 4.4930 1.0048 18 1 12.3279 2.4738 1.6836 19 1 10.3251 2.3238 0.3248 20 6 3.4345 1.3028 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.2244 2.3566 0.0107 25 1 0.9858 5.1905 -1.0261 26 1 0.2283 4.7227 0.5152 27 1 1.7434 5.6570 0.5156 28 1 5.9556 1.8056 -0.5130 29 1 5.8207 3.5805 -0.5119 30 1 8.2949 1.9816 0.9563 31 1 8.1607 3.7564 0.9570 32 1 11.4917 3.1128 4.2135 33 1 4.0431 0.4107 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013383.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:17:59 Heat of formation + Delta-G solvation = -13.919663 kcal Electronic energy + Delta-G solvation = -15508.370857 eV Core-core repulsion = 12853.520971 eV Total energy + Delta-G solvation = -2654.849886 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.75129 -38.50458 -33.77592 -33.01954 -31.66219 -29.41956 -29.02491 -28.12870 -26.44810 -22.70029 -22.18228 -21.60939 -17.81177 -17.24221 -16.87772 -16.11968 -15.76477 -15.49152 -14.64492 -14.55931 -14.10083 -14.06238 -13.44215 -13.24778 -13.14374 -12.58791 -12.50300 -12.28814 -12.21898 -12.09383 -11.60168 -11.38345 -10.79948 -10.52023 -10.12400 -9.68165 -9.48251 -9.05965 -8.91162 -8.72648 -8.69283 -6.77333 -6.16034 -4.18241 0.94541 1.31391 2.52999 2.92204 3.23436 3.30593 3.31532 3.65912 3.85818 4.15387 4.32841 4.46183 4.72980 4.81238 4.83504 5.07022 5.10740 5.15237 5.16130 5.39213 5.44043 5.47185 5.56533 5.74190 5.93333 5.96837 6.08730 6.49290 6.60104 6.71165 7.05633 7.44193 8.08944 8.32192 8.86722 9.39451 10.96080 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.035107 B = 0.004262 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.375103 B = 6568.058638 C = 6886.070259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.310 6.310 3 C 0.170 3.830 4 C -0.268 4.268 5 C 0.165 3.835 6 C -0.103 4.103 7 N -0.494 5.494 8 C 0.199 3.801 9 C -0.057 4.057 10 S -0.243 6.243 11 C 0.044 3.956 12 C -0.513 4.513 13 H 0.084 0.916 14 C 0.080 3.920 15 N -0.892 5.892 16 Si 0.879 3.121 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.266 1.266 20 C -0.195 4.195 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.102 0.898 24 H 0.136 0.864 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.036 0.964 31 H 0.032 0.968 32 H 0.268 0.732 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.433 -2.589 -11.832 23.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.117 3.883 4 C -0.290 4.290 5 C 0.027 3.973 6 C -0.161 4.161 7 N -0.208 5.208 8 C 0.061 3.939 9 C -0.205 4.205 10 S -0.015 6.015 11 C -0.104 4.104 12 C -0.552 4.552 13 H 0.102 0.898 14 C -0.125 4.125 15 N -0.529 5.529 16 Si 0.705 3.295 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.190 1.190 20 C -0.218 4.218 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.120 0.880 24 H 0.154 0.846 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.114 0.886 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -20.338 -2.044 -10.803 23.119 hybrid contribution 0.703 -0.669 -1.785 2.032 sum -19.635 -2.713 -12.588 23.481 Atomic orbital electron populations 1.23110 0.78026 1.04180 1.01569 1.86074 1.21694 1.26395 1.87986 1.19226 0.92219 0.84386 0.92469 1.21932 1.01075 0.92688 1.13302 1.21031 0.89709 0.94568 0.91980 1.20720 0.98582 0.93754 1.03004 1.67364 1.06157 1.31906 1.15422 1.20270 0.94702 0.87444 0.91461 1.22193 0.91421 1.05823 1.01105 1.87015 1.11250 1.97429 1.05854 1.21469 0.87725 0.99165 1.02024 1.20461 0.92055 1.52241 0.90477 0.89837 1.24848 0.97253 0.94163 0.96189 1.69866 1.10778 1.49401 1.22888 0.86797 0.80067 0.78922 0.83702 1.19851 1.20822 1.19037 1.21232 0.91928 0.99782 1.08819 0.92358 0.92497 0.87972 0.84597 0.90383 0.90871 0.89958 0.88950 0.88572 0.94577 0.94955 0.92224 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.18 16 2 O -0.31 -3.65 10.51 -18.92 -0.20 -3.85 16 3 C 0.17 2.26 6.74 -38.82 -0.26 2.00 16 4 C -0.27 -3.16 8.74 -39.30 -0.34 -3.51 16 5 C 0.17 2.19 6.78 -82.63 -0.56 1.63 16 6 C -0.10 -0.98 10.17 36.01 0.37 -0.61 16 7 N -0.49 -8.09 10.19 -5.81 -0.06 -8.14 16 8 C 0.20 3.26 6.04 -82.63 -0.50 2.77 16 9 C -0.06 -0.99 6.22 36.00 0.22 -0.77 16 10 S -0.24 -5.36 21.64 -107.50 -2.33 -7.69 16 11 C 0.04 1.08 4.77 36.01 0.17 1.25 16 12 C -0.51 -14.90 9.68 -34.44 -0.33 -15.23 16 13 H 0.08 2.67 7.96 -52.49 -0.42 2.25 16 14 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 15 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 16 Si 0.88 21.14 27.47 -169.99 -4.67 16.47 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 20 C -0.20 -2.91 9.70 -39.30 -0.38 -3.30 16 21 H 0.06 0.36 7.70 -51.93 -0.40 -0.04 16 22 H 0.06 0.33 7.72 -51.93 -0.40 -0.08 16 23 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.14 1.15 6.47 -52.49 -0.34 0.81 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.09 1.41 8.08 -51.92 -0.42 0.99 16 29 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.04 0.86 7.20 -51.93 -0.37 0.49 16 31 H 0.03 0.77 7.57 -51.93 -0.39 0.38 16 32 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.14 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 298.35 15.07 4.50 4.50 Total: -1.00 -32.85 298.35 -7.15 -39.99 By element: Atomic # 1 Polarization: 1.99 SS G_CDS: -4.44 Total: -2.45 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.72 Total: -12.37 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.71 Total: -34.60 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: -0.20 Total: -3.85 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.33 Total: -7.69 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.85 -7.15 -39.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013383.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.074 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds