Wall clock time and date at job start Sun Mar 29 2020 22:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34823 * 116.99901 * 2 1 4 4 O 1.21533 * 120.00150 * 359.97438 * 3 2 1 5 5 C 1.47134 * 119.99639 * 179.97438 * 3 2 1 6 6 C 1.36641 * 125.81280 * 179.97438 * 5 3 2 7 7 C 1.40045 * 106.91840 * 179.97438 * 6 5 3 8 8 C 1.36571 * 106.93594 * 0.02562 * 7 6 5 9 9 C 1.47327 * 125.80045 * 180.02562 * 8 7 6 10 10 O 1.21604 * 119.99557 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00212 * 179.97438 * 9 8 7 12 12 C 1.46499 * 120.00149 * 179.97438 * 11 9 8 13 13 C 1.50697 * 109.47308 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99857 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99743 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00282 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99675 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47321 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47213 * 119.99971 * 17 15 13 20 20 H 1.48499 * 109.47165 * 239.99783 * 17 15 13 21 21 O 1.34533 * 108.40508 * 359.97438 * 8 7 6 22 22 H 1.09004 * 109.47611 * 300.00771 * 1 2 3 23 23 H 1.09006 * 109.46805 * 60.00368 * 1 2 3 24 24 H 1.08999 * 109.47338 * 180.02562 * 1 2 3 25 25 H 1.08007 * 126.54042 * 0.24022 * 6 5 3 26 26 H 1.08000 * 126.52921 * 180.02562 * 7 6 5 27 27 H 0.96994 * 120.00014 * 359.97438 * 11 9 8 28 28 H 1.09003 * 109.46952 * 300.00592 * 12 11 9 29 29 H 1.09006 * 109.46539 * 59.99797 * 12 11 9 30 30 H 0.97005 * 119.99778 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2013 0.0000 4 8 1.4021 2.2206 -0.0005 5 6 3.5333 1.2782 0.0006 6 6 4.2739 2.4266 0.0001 7 6 5.6207 2.0430 0.0016 8 6 5.6455 0.6775 0.0022 9 6 6.8559 -0.1625 0.0042 10 8 7.9558 0.3561 0.0050 11 7 6.7440 -1.5056 0.0052 12 6 7.9476 -2.3408 0.0067 13 6 7.5502 -3.7945 0.0069 14 1 6.5056 -4.0687 0.0057 15 6 8.5203 -4.7743 0.0088 16 7 9.7923 -4.4403 0.0098 17 14 8.0278 -6.5762 0.0083 18 1 6.5467 -6.6845 0.0065 19 1 8.5745 -7.2385 -1.2031 20 1 8.5705 -7.2380 1.2218 21 8 4.3769 0.2297 0.0018 22 1 -0.3634 0.5140 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 0.0005 25 1 3.8931 3.4373 0.0030 26 1 6.4767 2.7016 0.0020 27 1 5.8667 -1.9192 0.0050 28 1 8.5397 -2.1265 -0.8831 29 1 8.5384 -2.1251 0.8969 30 1 10.4748 -5.1297 0.0107 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427609237.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:51 Heat of formation + Delta-G solvation = -106.135716 kcal Electronic energy + Delta-G solvation = -17609.775368 eV Core-core repulsion = 14372.340728 eV Total energy + Delta-G solvation = -3237.434640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.90114 -40.45512 -38.78800 -36.83415 -34.52761 -33.25547 -32.43965 -30.80129 -28.26014 -27.31689 -24.69121 -22.92899 -21.79689 -21.15365 -20.06791 -18.86662 -17.95009 -17.21079 -17.05553 -16.08623 -16.04973 -15.34401 -14.59635 -14.33202 -14.31443 -13.70624 -13.52104 -13.34405 -13.17106 -12.84594 -12.47111 -12.08011 -11.99367 -11.20699 -11.14149 -11.02912 -10.96335 -10.41632 -10.27061 -9.71622 -9.46089 -8.99052 -8.82695 -8.09059 -6.23210 -4.30562 0.42829 1.75915 1.97865 2.62427 2.70576 3.21266 3.28640 3.31902 3.50204 3.74045 4.29716 4.52294 4.64692 4.80758 4.89734 5.04075 5.13685 5.21600 5.30991 5.50545 5.67245 5.89915 6.05756 6.50896 7.09312 7.16978 7.33459 7.36988 7.56195 7.85866 8.36586 8.56191 8.82110 9.35871 10.86975 Molecular weight = 253.08amu Principal moments of inertia in cm(-1) A = 0.024046 B = 0.004718 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.140449 B = 5933.330147 C = 7077.024457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.344 6.344 3 C 0.556 3.444 4 O -0.488 6.488 5 C -0.054 4.054 6 C -0.110 4.110 7 C -0.157 4.157 8 C -0.001 4.001 9 C 0.577 3.423 10 O -0.523 6.523 11 N -0.689 5.689 12 C 0.246 3.754 13 C -0.546 4.546 14 H 0.066 0.934 15 C 0.065 3.935 16 N -0.885 5.885 17 Si 0.906 3.094 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.281 1.281 21 O -0.138 6.138 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.107 0.893 25 H 0.170 0.830 26 H 0.172 0.828 27 H 0.399 0.601 28 H 0.035 0.965 29 H 0.035 0.965 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.771 9.572 -0.017 18.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.260 6.260 3 C 0.401 3.599 4 O -0.377 6.377 5 C -0.105 4.105 6 C -0.130 4.130 7 C -0.177 4.177 8 C -0.056 4.056 9 C 0.359 3.641 10 O -0.402 6.402 11 N -0.336 5.336 12 C 0.126 3.874 13 C -0.584 4.584 14 H 0.084 0.916 15 C -0.139 4.139 16 N -0.522 5.522 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.207 1.207 21 O -0.033 6.033 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.125 0.875 25 H 0.188 0.812 26 H 0.190 0.810 27 H 0.233 0.767 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.103 9.757 -0.016 17.980 hybrid contribution -0.769 -0.979 0.000 1.244 sum -15.871 8.778 -0.016 18.137 Atomic orbital electron populations 1.23389 0.75177 1.04342 1.02806 1.86685 1.24089 1.31529 1.83711 1.19298 0.85381 0.82184 0.73082 1.90920 1.64295 1.35971 1.46493 1.20877 0.87945 0.86441 1.15286 1.21960 0.92116 0.98896 1.00039 1.21960 0.97738 0.93680 1.04357 1.23318 0.82544 0.94879 1.04884 1.16797 0.85019 0.82780 0.79496 1.90853 1.24135 1.73258 1.51977 1.46547 1.13082 1.04596 1.69379 1.19322 0.81388 0.88334 0.98392 1.21230 0.93631 0.89985 1.53565 0.91587 1.24939 0.94682 0.99768 0.94491 1.69978 0.99611 1.33898 1.48698 0.86323 0.78770 0.83830 0.77800 1.19546 1.20728 1.20734 1.84177 1.15216 1.34422 1.69436 0.91500 0.91494 0.87490 0.81247 0.81005 0.76725 0.94751 0.94747 0.92370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.34 -4.10 10.58 -42.25 -0.45 -4.55 16 3 C 0.56 7.21 7.95 34.34 0.27 7.48 16 4 O -0.49 -6.71 16.65 -19.29 -0.32 -7.04 16 5 C -0.05 -0.73 7.19 -36.55 -0.26 -0.99 16 6 C -0.11 -1.33 10.60 -39.48 -0.42 -1.75 16 7 C -0.16 -2.13 10.59 -39.51 -0.42 -2.55 16 8 C 0.00 -0.01 7.14 -36.49 -0.26 -0.27 16 9 C 0.58 11.53 7.81 -12.56 -0.10 11.44 16 10 O -0.52 -12.00 16.86 5.27 0.09 -11.91 16 11 N -0.69 -14.48 5.54 -62.60 -0.35 -14.83 16 12 C 0.25 6.30 5.43 -5.20 -0.03 6.27 16 13 C -0.55 -14.49 9.28 -34.44 -0.32 -14.81 16 14 H 0.07 1.66 7.60 -52.49 -0.40 1.26 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.88 -25.41 13.29 55.43 0.74 -24.67 16 17 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 O -0.14 -2.11 10.41 4.11 0.04 -2.07 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 26 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 27 H 0.40 7.50 8.08 -40.82 -0.33 7.17 16 28 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 287.00 15.07 4.33 4.33 Total: -1.00 -31.16 287.00 -4.33 -35.49 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -2.82 Total: 1.94 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -0.56 Total: 7.83 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.39 Total: -39.50 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.64 Total: -25.56 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.16 -4.33 -35.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427609237.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.644 kcal (2) G-P(sol) polarization free energy of solvation -31.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds