Wall clock time and date at job start Sun Mar 29 2020 22:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50697 * 119.99886 * 2 1 4 4 N 1.46903 * 109.46916 * 125.19414 * 3 2 1 5 5 C 1.46897 * 111.00128 * 297.11748 * 4 3 2 6 6 C 1.50705 * 109.47410 * 288.53867 * 5 4 3 7 7 H 1.08001 * 119.99701 * 0.33517 * 6 5 4 8 8 C 1.37869 * 120.00093 * 180.34495 * 6 5 4 9 9 N 1.31513 * 120.00221 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 120.00068 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46974 * 89.99856 * 10 8 6 12 12 H 1.48502 * 109.47009 * 209.99724 * 10 8 6 13 13 H 1.48494 * 109.46950 * 329.99755 * 10 8 6 14 14 C 1.38605 * 110.99892 * 61.07420 * 4 3 2 15 15 N 1.32958 * 120.53360 * 256.85848 * 14 4 3 16 16 C 1.31762 * 120.69667 * 180.02562 * 15 14 4 17 17 N 1.31779 * 121.86037 * 359.97438 * 16 15 14 18 18 C 1.32554 * 121.01662 * 0.02562 * 17 16 15 19 19 C 1.38206 * 119.18324 * 0.02562 * 18 17 16 20 20 Cl 1.73600 * 120.84241 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00155 * 359.97438 * 1 2 3 22 22 H 1.08004 * 120.00139 * 180.02562 * 1 2 3 23 23 H 1.08003 * 119.99948 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.47311 * 5.19624 * 3 2 1 25 25 H 1.09001 * 109.47223 * 245.19492 * 3 2 1 26 26 H 1.09000 * 109.47032 * 48.53298 * 5 4 3 27 27 H 1.09002 * 109.47273 * 168.53209 * 5 4 3 28 28 H 0.97007 * 120.00478 * 180.02562 * 9 8 6 29 29 H 1.08007 * 119.06978 * 180.02562 * 16 15 14 30 30 H 1.08001 * 120.40702 * 179.72270 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9996 1.3300 1.1319 5 6 2.2805 1.2672 2.4113 6 6 1.5725 2.5752 2.6544 7 1 1.6447 3.3714 1.9282 8 6 0.8329 2.7555 3.8038 9 7 0.7448 1.7859 4.6880 10 14 -0.0441 4.3770 4.1055 11 1 -1.4124 4.3139 3.5318 12 1 -0.1310 4.6284 5.5665 13 1 0.7139 5.4776 3.4581 14 6 3.9268 0.3045 1.0323 15 7 3.8100 -0.7869 1.7825 16 6 4.6898 -1.7635 1.6908 17 7 5.7119 -1.7032 0.8613 18 6 5.8966 -0.6482 0.0804 19 6 4.9997 0.4015 0.1426 20 17 5.2006 1.8043 -0.8601 21 1 -0.5400 0.9353 0.0004 22 1 -0.5400 -0.9353 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3588 2.1315 0.0931 25 1 2.6185 1.4042 -0.9329 26 1 1.5496 0.4593 2.3780 27 1 2.9898 1.0825 3.2181 28 1 0.2241 1.9126 5.4966 29 1 4.5693 -2.6384 2.3125 30 1 6.7403 -0.6072 -0.5926 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488484292.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:11 Heat of formation + Delta-G solvation = 60.233330 kcal Electronic energy + Delta-G solvation = -16459.729171 eV Core-core repulsion = 13702.510751 eV Total energy + Delta-G solvation = -2757.218421 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.068 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.22853 -39.12647 -37.61860 -34.90450 -34.76775 -33.57690 -32.00684 -29.26905 -27.04024 -25.64520 -24.73346 -22.87380 -21.00848 -18.93478 -18.52614 -18.02169 -17.15386 -17.09040 -16.37459 -16.00265 -15.79826 -15.19563 -14.79195 -14.31565 -14.11824 -13.47273 -13.24431 -12.88490 -12.76707 -12.56356 -12.38798 -12.22671 -12.16714 -12.11601 -11.77853 -11.39003 -10.62562 -10.50082 -10.32893 -10.18987 -9.35577 -8.18806 -6.29674 -0.27262 -0.03433 1.02284 1.33027 1.42168 1.43422 1.54481 2.37630 2.60815 2.70835 3.14585 3.18649 3.23394 3.71586 3.88978 4.02035 4.18345 4.38138 4.50413 4.81609 4.93203 5.05929 5.18346 5.29102 5.55830 5.62454 5.72271 5.82080 5.97726 6.08216 6.42999 6.82258 7.05495 7.38941 8.91949 Molecular weight = 253.07amu Principal moments of inertia in cm(-1) A = 0.023246 B = 0.007191 C = 0.006946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.219765 B = 3892.911121 C = 4030.217415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.195 4.195 3 C 0.100 3.900 4 N -0.475 5.475 5 C 0.229 3.771 6 C -0.528 4.528 7 H 0.066 0.934 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.966 3.034 11 H -0.270 1.270 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.358 3.642 15 N -0.565 5.565 16 C 0.308 3.692 17 N -0.533 5.533 18 C 0.177 3.823 19 C -0.159 4.159 20 Cl -0.025 7.025 21 H 0.102 0.898 22 H 0.109 0.891 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.095 0.905 26 H -0.003 1.003 27 H -0.006 1.006 28 H 0.264 0.736 29 H 0.224 0.776 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -4.044 -11.678 13.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.214 4.214 3 C -0.025 4.025 4 N -0.192 5.192 5 C 0.104 3.896 6 C -0.566 4.566 7 H 0.084 0.916 8 C -0.190 4.190 9 N -0.568 5.568 10 Si 0.790 3.210 11 H -0.195 1.195 12 H -0.211 1.211 13 H -0.189 1.189 14 C 0.118 3.882 15 N -0.285 5.285 16 C 0.020 3.980 17 N -0.249 5.249 18 C 0.012 3.988 19 C -0.194 4.194 20 Cl 0.003 6.997 21 H 0.120 0.880 22 H 0.127 0.873 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.113 0.887 26 H 0.015 0.985 27 H 0.012 0.988 28 H 0.072 0.928 29 H 0.240 0.760 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.524 -4.239 -11.042 13.507 hybrid contribution -0.795 0.781 0.302 1.155 sum 5.729 -3.458 -10.740 12.654 Atomic orbital electron populations 1.23944 0.95526 1.02563 0.97829 1.23360 0.97337 0.98195 1.02537 1.21340 0.93510 0.95934 0.91706 1.59717 1.17223 1.35442 1.06861 1.19209 0.91272 0.96062 0.83030 1.21412 1.29888 0.99868 1.05436 0.91610 1.25822 0.97302 1.00372 0.95553 1.70112 1.41724 1.34286 1.10671 0.85436 0.78946 0.79396 0.77180 1.19516 1.21089 1.18949 1.20518 0.92608 0.87141 0.87930 1.68861 1.31185 1.01572 1.26898 1.25457 0.84166 0.96154 0.92240 1.68627 1.22384 1.25855 1.07992 1.23648 0.96126 0.85302 0.93753 1.22477 0.99972 0.95018 1.01912 1.98351 1.96527 1.38730 1.66054 0.87976 0.87298 0.89051 0.89073 0.88685 0.98514 0.98784 0.92759 0.76034 0.77201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.32 14.32 67.78 0.97 -4.35 16 2 C -0.19 -6.98 7.57 25.64 0.19 -6.78 16 3 C 0.10 3.71 5.44 85.56 0.47 4.17 16 4 N -0.48 -20.50 4.24 -709.81 -3.01 -23.50 16 5 C 0.23 12.15 3.82 85.56 0.33 12.48 16 6 C -0.53 -29.26 8.55 25.60 0.22 -29.04 16 7 H 0.07 3.54 7.47 -2.91 -0.02 3.51 16 8 C 0.01 0.47 5.46 84.65 0.46 0.93 16 9 N -0.93 -55.52 13.29 21.44 0.28 -55.24 16 10 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 14 C 0.36 13.81 4.82 133.17 0.64 14.45 16 15 N -0.57 -22.00 8.83 -197.50 -1.74 -23.74 16 16 C 0.31 9.42 12.28 180.90 2.22 11.64 16 17 N -0.53 -14.78 10.43 -200.23 -2.09 -16.87 16 18 C 0.18 4.49 11.11 84.58 0.94 5.43 16 19 C -0.16 -4.92 6.24 22.62 0.14 -4.78 16 20 Cl -0.03 -0.69 27.15 -2.72 -0.07 -0.76 16 21 H 0.10 3.34 7.84 -2.91 -0.02 3.31 16 22 H 0.11 3.15 8.06 -2.91 -0.02 3.12 16 23 H 0.09 3.33 7.42 -2.91 -0.02 3.31 16 24 H 0.09 3.55 6.83 -2.38 -0.02 3.53 16 25 H 0.10 3.05 6.68 -2.39 -0.02 3.04 16 26 H 0.00 -0.17 6.84 -2.39 -0.02 -0.19 16 27 H -0.01 -0.36 7.75 -2.39 -0.02 -0.38 16 28 H 0.26 14.87 8.31 -92.70 -0.77 14.10 16 29 H 0.22 5.19 8.06 -2.91 -0.02 5.16 16 30 H 0.21 3.50 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -65.31 277.72 3.13 -62.18 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 1.15 Total: 8.17 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.58 Total: 4.14 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -6.56 Total: -119.36 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.07 Total: -0.76 kcal Total: -65.31 3.13 -62.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488484292.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.415 kcal (2) G-P(sol) polarization free energy of solvation -65.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds