Wall clock time and date at job start Sun Mar 29 2020 23:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47166 * 193.52202 * 3 2 1 5 5 C 1.37099 * 120.00090 * 273.33795 * 4 3 2 6 6 H 1.07992 * 120.00643 * 145.44313 * 5 4 3 7 7 C 1.38957 * 119.99798 * 325.44137 * 5 4 3 8 8 N 1.31410 * 119.99619 * 332.26351 * 7 5 4 9 9 Si 1.86793 * 120.00273 * 152.26590 * 7 5 4 10 10 H 1.48507 * 109.46985 * 0.02562 * 9 7 5 11 11 H 1.48490 * 109.47423 * 240.00168 * 9 7 5 12 12 H 1.48496 * 109.47179 * 119.99515 * 9 7 5 13 13 C 1.34776 * 119.99965 * 93.33195 * 4 3 2 14 14 O 1.21293 * 119.99854 * 186.41257 * 13 4 3 15 15 C 1.50700 * 120.00085 * 6.42156 * 13 4 3 16 16 H 1.08997 * 109.38918 * 40.46868 * 15 13 4 17 17 C 1.52576 * 109.38876 * 160.27758 * 15 13 4 18 18 C 1.52584 * 110.72244 * 190.82006 * 17 15 13 19 19 C 1.53099 * 109.95927 * 289.32325 * 18 17 15 20 20 S 1.81748 * 108.83854 * 63.02569 * 19 18 17 21 21 C 1.53096 * 109.38454 * 280.77080 * 15 13 4 22 22 H 4.40643 * 5.51310 * 180.02562 * 4 1 2 23 23 H 1.08997 * 109.46709 * 73.52142 * 3 2 1 24 24 H 1.09002 * 109.47098 * 313.52305 * 3 2 1 25 25 H 0.96999 * 120.00710 * 354.16123 * 8 7 5 26 26 H 1.08995 * 109.23039 * 311.13867 * 17 15 13 27 27 H 1.08999 * 109.23274 * 70.54322 * 17 15 13 28 28 H 1.09002 * 109.39150 * 49.47751 * 18 17 15 29 29 H 1.09006 * 109.39039 * 169.17528 * 18 17 15 30 30 H 1.08995 * 109.57705 * 182.83376 * 19 18 17 31 31 H 1.09008 * 109.57352 * 303.09069 * 19 18 17 32 32 H 1.09002 * 109.57765 * 296.63381 * 21 15 13 33 33 H 1.08996 * 109.58107 * 57.02303 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.3438 0.3229 5 6 3.2967 2.2718 -0.6730 6 1 3.1048 3.3159 -0.4749 7 6 3.7089 1.8689 -1.9374 8 7 4.4435 0.7881 -2.0755 9 14 3.2187 2.8635 -3.4406 10 1 2.3977 4.0267 -3.0183 11 1 2.4296 2.0091 -4.3638 12 1 4.4397 3.3460 -4.1345 13 6 3.4222 1.6672 1.5991 14 8 3.7139 2.8095 1.8842 15 6 3.3826 0.6095 2.6719 16 1 3.8116 -0.3147 2.2849 17 6 4.1931 1.0790 3.8763 18 6 4.3983 -0.0629 4.8673 19 6 3.0745 -0.3987 5.5592 20 16 1.8911 -0.9833 4.3098 21 6 1.9299 0.3592 3.0852 22 1 -1.0502 -0.0005 0.0001 23 1 3.0094 -0.2907 -0.9854 24 1 3.0097 -0.7069 0.7452 25 1 4.7690 0.3193 -1.2912 26 1 5.1645 1.4387 3.5371 27 1 3.6623 1.8921 4.3715 28 1 4.7622 -0.9423 4.3359 29 1 5.1325 0.2351 5.6159 30 1 3.2381 -1.1801 6.3012 31 1 2.6817 0.4929 6.0482 32 1 1.5135 1.2659 3.5240 33 1 1.3455 0.0727 2.2108 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491304477.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:56 Heat of formation + Delta-G solvation = 16.326203 kcal Electronic energy + Delta-G solvation = -17010.864747 eV Core-core repulsion = 14357.326420 eV Total energy + Delta-G solvation = -2653.538327 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.37785 -36.28046 -35.26799 -32.83886 -31.61700 -30.96319 -27.07982 -26.76287 -24.94675 -23.04595 -21.10901 -19.13195 -18.19449 -17.25053 -16.76744 -15.88303 -15.33112 -14.67937 -14.58674 -14.09609 -13.83178 -13.38865 -13.36871 -13.00619 -12.82273 -12.45943 -12.15015 -11.53988 -11.34980 -11.23689 -10.94715 -10.74466 -10.70652 -10.29971 -10.23524 -9.81017 -9.71795 -9.53568 -9.01563 -8.50532 -7.92238 -7.60536 -6.70474 -4.07347 1.85124 2.56275 3.19395 3.27019 3.33407 3.35639 3.52284 3.68028 4.19068 4.58413 4.78238 4.79320 4.94682 4.96761 5.03994 5.22789 5.31544 5.43576 5.53184 5.64672 5.76042 5.84265 5.91863 5.99851 6.12075 6.31698 6.43996 6.46621 6.47894 7.80054 8.02614 8.12525 8.50916 8.78165 9.26259 9.70396 10.53052 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030828 B = 0.007096 C = 0.006311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.038645 B = 3944.699818 C = 4435.336222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.166 4.166 3 C 0.183 3.817 4 N -0.446 5.446 5 C -0.398 4.398 6 H 0.087 0.913 7 C 0.011 3.989 8 N -0.873 5.873 9 Si 1.075 2.925 10 H -0.283 1.283 11 H -0.281 1.281 12 H -0.285 1.285 13 C 0.469 3.531 14 O -0.566 6.566 15 C -0.105 4.105 16 H 0.094 0.906 17 C -0.106 4.106 18 C -0.121 4.121 19 C -0.081 4.081 20 S -0.273 6.273 21 C -0.072 4.072 22 H 0.212 0.788 23 H 0.119 0.881 24 H 0.085 0.915 25 H 0.275 0.725 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -5.167 9.433 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.167 4.167 3 C 0.059 3.941 4 N -0.166 5.166 5 C -0.525 4.525 6 H 0.105 0.895 7 C -0.196 4.196 8 N -0.507 5.507 9 Si 0.901 3.099 10 H -0.208 1.208 11 H -0.207 1.207 12 H -0.211 1.211 13 C 0.256 3.744 14 O -0.448 6.448 15 C -0.128 4.128 16 H 0.112 0.888 17 C -0.144 4.144 18 C -0.160 4.160 19 C -0.229 4.229 20 S -0.046 6.046 21 C -0.220 4.220 22 H 0.229 0.771 23 H 0.136 0.864 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.593 -5.505 7.925 10.296 hybrid contribution 0.291 0.955 1.643 1.923 sum -3.302 -4.550 9.568 11.098 Atomic orbital electron populations 1.24712 0.95685 1.01265 1.03149 1.23869 0.95074 0.99382 0.98422 1.18794 0.83397 0.87145 1.04746 1.43516 1.55880 1.11127 1.06028 1.20307 1.49297 0.91558 0.91346 0.89478 1.26387 0.93386 0.98873 1.00917 1.70740 1.26198 1.19444 1.34348 0.83421 0.76669 0.75432 0.74369 1.20843 1.20700 1.21081 1.20203 0.81233 0.89251 0.83686 1.90530 1.51733 1.21177 1.81314 1.21499 0.95008 1.00017 0.96294 0.88818 1.21280 1.01356 0.97405 0.94369 1.21758 0.95823 0.99742 0.98655 1.23447 0.96838 1.04297 0.98348 1.86719 1.58557 1.34288 1.25035 1.23641 0.99299 0.98861 1.00229 0.77098 0.86385 0.89754 0.91418 0.90444 0.91290 0.90634 0.90769 0.88095 0.89991 0.89760 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.04 18.97 29.55 0.56 -3.48 16 2 C -0.17 -3.35 11.33 -37.12 -0.42 -3.77 16 3 C 0.18 3.91 4.70 -6.83 -0.03 3.88 16 4 N -0.45 -11.02 2.30 -117.93 -0.27 -11.29 16 5 C -0.40 -11.01 8.88 -14.93 -0.13 -11.15 16 6 H 0.09 2.59 7.71 -52.49 -0.40 2.19 16 7 C 0.01 0.29 4.85 -17.47 -0.08 0.21 16 8 N -0.87 -23.58 12.17 55.50 0.68 -22.91 16 9 Si 1.08 23.85 30.00 -169.99 -5.10 18.75 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 C 0.47 11.11 6.75 -10.99 -0.07 11.04 16 14 O -0.57 -15.41 15.95 5.55 0.09 -15.32 16 15 C -0.10 -1.90 1.55 -91.94 -0.14 -2.04 16 16 H 0.09 1.62 6.48 -51.93 -0.34 1.29 16 17 C -0.11 -1.69 4.29 -27.16 -0.12 -1.81 16 18 C -0.12 -1.47 5.75 -26.89 -0.15 -1.63 16 19 C -0.08 -0.95 6.45 37.21 0.24 -0.71 16 20 S -0.27 -3.95 22.33 -107.50 -2.40 -6.35 16 21 C -0.07 -1.21 5.56 37.21 0.21 -1.00 16 22 H 0.21 2.80 7.80 -54.08 -0.42 2.38 16 23 H 0.12 2.75 5.31 -51.93 -0.28 2.47 16 24 H 0.08 1.57 5.75 -51.93 -0.30 1.27 16 25 H 0.27 7.35 7.20 -40.82 -0.29 7.06 16 26 H 0.08 1.32 8.02 -51.93 -0.42 0.91 16 27 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 28 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 32 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.12 2.05 4.61 -51.93 -0.24 1.81 16 LS Contribution 284.72 15.07 4.29 4.29 Total: -1.00 -30.58 284.72 -6.88 -37.46 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.01 Total: 5.82 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -0.15 Total: -10.45 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.40 Total: -34.20 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.09 Total: -15.32 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -5.10 Total: 18.75 kcal Atomic # 16 Polarization: -3.95 SS G_CDS: -2.40 Total: -6.35 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.58 -6.88 -37.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491304477.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.785 kcal (2) G-P(sol) polarization free energy of solvation -30.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds