Wall clock time and date at job start Sun Mar 29 2020 23:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47328 * 318.60791 * 3 2 1 5 5 C 1.37108 * 119.99540 * 263.82480 * 4 3 2 6 6 H 1.08000 * 119.99366 * 188.49464 * 5 4 3 7 7 C 1.38945 * 119.99971 * 8.50065 * 5 4 3 8 8 N 1.31411 * 120.00374 * 25.75582 * 7 5 4 9 9 Si 1.86803 * 119.99689 * 205.75628 * 7 5 4 10 10 H 1.48501 * 109.47166 * 89.99893 * 9 7 5 11 11 H 1.48497 * 109.46996 * 209.99853 * 9 7 5 12 12 H 1.48497 * 109.47038 * 330.00053 * 9 7 5 13 13 C 1.34770 * 120.00308 * 83.82582 * 4 3 2 14 14 O 1.21292 * 120.00077 * 355.83313 * 13 4 3 15 15 C 1.50694 * 120.00145 * 176.11378 * 13 4 3 16 16 H 1.09000 * 109.39044 * 317.35929 * 15 13 4 17 17 C 1.52587 * 109.39307 * 197.65906 * 15 13 4 18 18 C 1.52582 * 110.72595 * 169.17615 * 17 15 13 19 19 C 1.53094 * 109.95869 * 70.67640 * 18 17 15 20 20 S 1.81747 * 108.84063 * 296.97217 * 19 18 17 21 21 C 1.53104 * 109.39283 * 77.16147 * 15 13 4 22 22 H 4.40647 * 5.51355 * 179.97438 * 4 1 2 23 23 H 1.09001 * 109.46679 * 198.60566 * 3 2 1 24 24 H 1.09001 * 109.46511 * 78.60566 * 3 2 1 25 25 H 0.96996 * 120.00028 * 180.02562 * 8 7 5 26 26 H 1.09006 * 109.22093 * 289.49669 * 17 15 13 27 27 H 1.08998 * 109.22441 * 48.85432 * 17 15 13 28 28 H 1.09001 * 109.38920 * 310.52170 * 18 17 15 29 29 H 1.09005 * 109.30706 * 190.77468 * 18 17 15 30 30 H 1.08998 * 109.57554 * 177.16940 * 19 18 17 31 31 H 1.09003 * 109.68430 * 56.84093 * 19 18 17 32 32 H 1.08998 * 109.57235 * 302.98195 * 21 15 13 33 33 H 1.08999 * 109.57188 * 63.23716 * 21 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0353 0.9133 5 6 3.4837 -0.7074 2.1980 6 1 3.9711 -1.4368 2.8280 7 6 3.2099 0.5631 2.6895 8 7 2.2218 1.2652 2.1819 9 14 4.2465 1.2731 4.0718 10 1 5.3977 2.0142 3.4968 11 1 3.4187 2.1988 4.8860 12 1 4.7472 0.1706 4.9315 13 6 3.2418 -2.3105 0.4905 14 8 2.8626 -2.6149 -0.6207 15 6 3.8265 -3.3596 1.4008 16 1 4.7023 -2.9527 1.9062 17 6 4.2397 -4.5740 0.5745 18 6 5.0725 -5.5393 1.4127 19 6 4.1861 -6.2239 2.4564 20 16 3.5321 -4.9621 3.5893 21 6 2.7820 -3.7676 2.4432 22 1 -1.0498 -0.0001 0.0003 23 1 3.0089 0.9748 0.3279 24 1 3.0094 -0.2022 -1.0075 25 1 2.0310 2.1522 2.5248 26 1 3.3460 -5.0867 0.2185 27 1 4.8275 -4.2426 -0.2814 28 1 5.8663 -4.9884 1.9172 29 1 5.5135 -6.2941 0.7613 30 1 4.7760 -6.9483 3.0180 31 1 3.3597 -6.7323 1.9597 32 1 2.4545 -2.8871 2.9959 33 1 1.9273 -4.2244 1.9442 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491304478.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:58:58 Heat of formation + Delta-G solvation = 5.668761 kcal Electronic energy + Delta-G solvation = -16999.383091 eV Core-core repulsion = 14345.382623 eV Total energy + Delta-G solvation = -2654.000468 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.90801 -37.64826 -36.69457 -33.91104 -33.48920 -32.36411 -28.48342 -28.14214 -26.74674 -24.38069 -22.13615 -20.83956 -19.58936 -18.60003 -18.07308 -17.25700 -16.40406 -16.25285 -15.99228 -15.71485 -15.28981 -14.72811 -14.53561 -14.18605 -13.87301 -13.83150 -13.53280 -13.33512 -12.78981 -12.57236 -12.37752 -12.28939 -12.12005 -11.81401 -11.74178 -11.30964 -11.20760 -10.73303 -10.66544 -10.18161 -9.90853 -8.67355 -8.34379 -5.86625 0.80162 1.37574 1.49990 1.54285 1.59498 1.91131 2.06010 2.30339 2.35425 2.99952 3.15681 3.73126 3.84927 3.88222 3.93268 4.07572 4.20383 4.35937 4.53280 4.58730 4.71877 4.80433 4.85752 4.96318 5.00650 5.08591 5.18066 5.34787 5.37101 5.47773 5.71351 6.36190 7.04282 7.08892 7.51314 7.92017 8.66488 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.008834 C = 0.006963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.063219 B = 3168.858181 C = 4020.304267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.152 4.152 3 C 0.233 3.767 4 N -0.442 5.442 5 C -0.361 4.361 6 H 0.115 0.885 7 C 0.003 3.997 8 N -0.872 5.872 9 Si 0.978 3.022 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.260 1.260 13 C 0.449 3.551 14 O -0.633 6.633 15 C -0.077 4.077 16 H 0.098 0.902 17 C -0.103 4.103 18 C -0.111 4.111 19 C -0.074 4.074 20 S -0.284 6.284 21 C -0.054 4.054 22 H 0.237 0.763 23 H 0.110 0.890 24 H 0.062 0.938 25 H 0.271 0.729 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.818 -8.544 1.916 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.153 4.153 3 C 0.110 3.890 4 N -0.158 5.158 5 C -0.487 4.487 6 H 0.133 0.867 7 C -0.201 4.201 8 N -0.508 5.508 9 Si 0.802 3.198 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.184 1.184 13 C 0.237 3.763 14 O -0.522 6.522 15 C -0.100 4.100 16 H 0.116 0.884 17 C -0.141 4.141 18 C -0.150 4.150 19 C -0.221 4.221 20 S -0.057 6.057 21 C -0.203 4.203 22 H 0.253 0.747 23 H 0.128 0.872 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.601 -8.465 2.571 9.971 hybrid contribution -0.362 0.954 -0.722 1.250 sum 4.239 -7.511 1.849 8.821 Atomic orbital electron populations 1.25208 0.96456 1.02419 1.03400 1.23681 0.95317 0.98605 0.97712 1.18261 0.84496 0.94112 0.92103 1.44011 1.54578 1.05637 1.11618 1.19974 1.39293 0.99835 0.89606 0.86747 1.25977 0.95886 0.97080 1.01141 1.70283 1.24208 1.12718 1.43635 0.85155 0.78304 0.78471 0.77909 1.19708 1.21403 1.18405 1.20709 0.83887 0.83374 0.88290 1.90504 1.56403 1.81159 1.24154 1.21154 0.98695 0.94831 0.95294 0.88358 1.21302 1.00359 0.94420 0.98061 1.21707 0.97653 0.98569 0.97075 1.23587 1.02447 0.97439 0.98671 1.86743 1.74823 1.26204 1.17937 1.23159 0.98939 1.00250 0.97976 0.74657 0.87196 0.92045 0.91859 0.92561 0.91653 0.90324 0.87919 0.85242 0.89331 0.88516 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.51 19.25 74.32 1.43 -10.08 16 2 C -0.15 -7.62 12.05 31.13 0.38 -7.24 16 3 C 0.23 11.62 5.04 84.57 0.43 12.04 16 4 N -0.44 -22.03 2.61 -645.43 -1.68 -23.71 16 5 C -0.36 -17.54 8.19 84.04 0.69 -16.85 16 6 H 0.12 5.29 5.55 -2.91 -0.02 5.27 16 7 C 0.00 0.16 4.88 84.93 0.41 0.57 16 8 N -0.87 -44.28 9.54 21.66 0.21 -44.07 16 9 Si 0.98 38.43 29.62 68.60 2.03 40.46 16 10 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 11 H -0.29 -11.43 7.11 99.48 0.71 -10.73 16 12 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 13 C 0.45 21.41 6.73 87.66 0.59 22.00 16 14 O -0.63 -33.46 15.80 -3.07 -0.05 -33.51 16 15 C -0.08 -2.93 1.53 -11.64 -0.02 -2.95 16 16 H 0.10 3.71 6.88 -2.39 -0.02 3.69 16 17 C -0.10 -3.27 4.28 30.32 0.13 -3.14 16 18 C -0.11 -2.51 5.75 30.49 0.18 -2.34 16 19 C -0.07 -1.61 6.45 72.01 0.46 -1.15 16 20 S -0.28 -8.60 22.33 -56.49 -1.26 -9.86 16 21 C -0.05 -2.01 5.44 72.02 0.39 -1.62 16 22 H 0.24 8.20 7.80 -4.43 -0.03 8.17 16 23 H 0.11 5.57 5.88 -2.39 -0.01 5.56 16 24 H 0.06 2.99 7.68 -2.39 -0.02 2.97 16 25 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 26 H 0.06 1.87 8.08 -2.38 -0.02 1.86 16 27 H 0.06 2.17 8.00 -2.39 -0.02 2.15 16 28 H 0.08 1.78 8.05 -2.39 -0.02 1.76 16 29 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.10 4.06 6.58 -2.39 -0.02 4.05 16 33 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -60.37 286.19 5.42 -54.95 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 1.10 Total: 26.50 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.07 Total: -10.75 kcal Atomic # 7 Polarization: -66.31 SS G_CDS: -1.48 Total: -67.78 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.05 Total: -33.51 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.26 Total: -9.86 kcal Total: -60.37 5.42 -54.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491304478.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.621 kcal (2) G-P(sol) polarization free energy of solvation -60.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds