Wall clock time and date at job start Sun Mar 29 2020 22:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46759 * 220.59943 * 3 2 1 5 5 C 1.36940 * 120.00336 * 263.91016 * 4 3 2 6 6 H 1.07997 * 120.00585 * 199.39844 * 5 4 3 7 7 C 1.38816 * 119.99289 * 19.40847 * 5 4 3 8 8 N 1.31621 * 120.00524 * 22.26990 * 7 5 4 9 9 Si 1.86801 * 119.99544 * 202.27229 * 7 5 4 10 10 H 1.48498 * 109.47367 * 89.99728 * 9 7 5 11 11 H 1.48499 * 109.46997 * 209.99846 * 9 7 5 12 12 H 1.48498 * 109.47455 * 329.99621 * 9 7 5 13 13 C 1.46504 * 120.00250 * 83.91770 * 4 3 2 14 14 C 1.52994 * 109.47354 * 89.99839 * 13 4 3 15 15 N 1.46502 * 109.47608 * 180.02562 * 14 13 4 16 16 C 1.35042 * 126.04090 * 124.99244 * 15 14 13 17 17 C 1.35371 * 107.72757 * 179.97438 * 16 15 14 18 18 Cl 1.73603 * 126.04435 * 179.97438 * 17 16 15 19 19 C 1.39924 * 107.90894 * 0.02562 * 17 16 15 20 20 N 1.30852 * 108.21512 * 359.76025 * 19 17 16 21 21 H 4.40631 * 5.51430 * 179.97438 * 4 1 2 22 22 H 1.08997 * 109.47496 * 100.60358 * 3 2 1 23 23 H 1.08998 * 109.47214 * 340.59840 * 3 2 1 24 24 H 0.96998 * 119.99879 * 180.02562 * 8 7 5 25 25 H 1.09006 * 109.46886 * 329.99803 * 13 4 3 26 26 H 1.09004 * 109.46958 * 209.99841 * 13 4 3 27 27 H 1.09004 * 109.47089 * 299.99921 * 14 13 4 28 28 H 1.08996 * 109.47060 * 60.00198 * 14 13 4 29 29 H 1.08000 * 126.13193 * 359.95012 * 16 15 14 30 30 H 1.08000 * 125.89112 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0496 0.8989 5 6 3.4801 2.2755 0.3964 6 1 4.1182 2.9329 0.9681 7 6 3.0105 2.6733 -0.8479 8 7 1.9262 2.1210 -1.3496 9 14 3.9177 3.9924 -1.8104 10 1 4.9428 3.3565 -2.6765 11 1 2.9524 4.7415 -2.6542 12 1 4.5792 4.9279 -0.8657 13 6 3.2513 0.7871 2.3354 14 6 4.6447 0.2339 2.6405 15 7 4.7621 -0.0292 4.0769 16 6 5.1105 -1.2044 4.6435 17 6 5.1031 -1.0329 5.9863 18 17 5.4796 -2.2429 7.1728 19 6 4.7372 0.2919 6.2488 20 7 4.5373 0.8954 5.1050 21 1 -1.0501 -0.0001 -0.0003 22 1 3.0093 0.1899 -1.0101 23 1 3.0098 -0.9685 0.3414 24 1 1.5984 2.3988 -2.2193 25 1 2.4976 0.0586 2.6344 26 1 3.0996 1.7145 2.8878 27 1 4.7964 -0.6935 2.0881 28 1 5.3983 0.9624 2.3414 29 1 5.3514 -2.1175 4.1194 30 1 4.6409 0.7404 7.2266 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491637775.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:58:21 Heat of formation + Delta-G solvation = 139.208135 kcal Electronic energy + Delta-G solvation = -15729.570350 eV Core-core repulsion = 12975.776533 eV Total energy + Delta-G solvation = -2753.793816 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.068 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.17241 -38.23596 -37.29693 -34.88832 -33.50438 -32.70060 -31.03220 -29.19872 -27.93963 -25.62363 -23.05163 -22.10924 -21.58363 -19.40803 -18.32615 -18.16083 -16.99408 -16.42862 -15.84753 -15.55121 -15.40129 -15.04873 -14.69499 -14.27275 -14.06637 -13.50094 -13.29735 -13.11882 -12.74884 -12.62622 -12.35060 -12.27775 -12.04843 -11.92220 -11.37956 -10.82398 -10.78863 -10.55111 -10.35767 -9.39893 -8.97760 -7.87392 -5.33312 0.84059 1.04967 1.48172 1.50933 1.58060 1.66115 1.87170 2.31395 2.50061 2.57868 3.24163 3.55544 3.84855 3.91394 4.07574 4.10283 4.25535 4.43356 4.56085 4.66248 4.87127 4.91233 5.10301 5.26556 5.45140 5.60688 5.66226 5.94136 6.25150 6.62640 7.05463 7.33327 7.75045 8.17329 9.13455 Molecular weight = 253.07amu Principal moments of inertia in cm(-1) A = 0.031112 B = 0.004726 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.760954 B = 5923.246098 C = 6520.047074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.136 4.136 3 C 0.269 3.731 4 N -0.593 5.593 5 C -0.277 4.277 6 H 0.073 0.927 7 C -0.037 4.037 8 N -0.910 5.910 9 Si 0.960 3.040 10 H -0.281 1.281 11 H -0.301 1.301 12 H -0.275 1.275 13 C 0.150 3.850 14 C 0.125 3.875 15 N -0.359 5.359 16 C 0.078 3.922 17 C -0.204 4.204 18 Cl -0.040 7.040 19 C 0.056 3.944 20 N -0.321 5.321 21 H 0.219 0.781 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.248 0.752 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.213 0.787 30 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.749 -9.343 11.113 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 C -0.139 4.139 3 C 0.144 3.856 4 N -0.314 5.314 5 C -0.407 4.407 6 H 0.091 0.909 7 C -0.235 4.235 8 N -0.553 5.553 9 Si 0.789 3.211 10 H -0.207 1.207 11 H -0.228 1.228 12 H -0.200 1.200 13 C 0.023 3.977 14 C 0.003 3.997 15 N -0.141 5.141 16 C -0.071 4.071 17 C -0.243 4.243 18 Cl -0.012 7.012 19 C -0.130 4.130 20 N -0.143 5.143 21 H 0.236 0.764 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.139 0.861 28 H 0.099 0.901 29 H 0.229 0.771 30 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 6.398 -8.246 10.312 14.672 hybrid contribution 0.011 0.205 -0.231 0.309 sum 6.409 -8.041 10.081 14.400 Atomic orbital electron populations 1.25029 0.96487 1.05523 1.04316 1.24753 0.96345 0.95802 0.96996 1.17812 0.82594 0.89893 0.95255 1.44157 1.74864 1.10901 1.01472 1.19418 1.24332 0.95269 1.01646 0.90930 1.25581 0.96572 1.00730 1.00569 1.70291 1.20400 1.46321 1.18324 0.85387 0.77899 0.79075 0.78719 1.20708 1.22847 1.19988 1.20842 0.93595 0.98615 0.84691 1.22563 1.00623 1.03927 0.72616 1.48753 1.50986 1.07368 1.06991 1.22845 0.98932 0.92317 0.93005 1.20839 1.20563 0.92727 0.90193 1.98307 1.93630 1.53785 1.55450 1.24297 0.98427 0.91983 0.98314 1.77523 1.24532 1.16949 0.95295 0.76400 0.91094 0.90703 0.94197 0.93979 0.94337 0.86078 0.90099 0.77062 0.77359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.04 19.25 74.32 1.43 -11.60 16 2 C -0.14 -6.41 11.50 31.12 0.36 -6.05 16 3 C 0.27 11.86 5.41 84.57 0.46 12.32 16 4 N -0.59 -27.17 2.49 -712.55 -1.77 -28.94 16 5 C -0.28 -14.27 9.63 84.03 0.81 -13.46 16 6 H 0.07 3.72 7.92 -2.91 -0.02 3.70 16 7 C -0.04 -1.96 4.82 84.86 0.41 -1.56 16 8 N -0.91 -50.77 9.61 21.65 0.21 -50.56 16 9 Si 0.96 43.19 29.61 68.60 2.03 45.22 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 C 0.15 5.80 5.86 86.38 0.51 6.31 16 14 C 0.13 3.77 6.83 86.38 0.59 4.36 16 15 N -0.36 -10.32 3.68 -347.94 -1.28 -11.60 16 16 C 0.08 1.77 11.43 83.54 0.95 2.73 16 17 C -0.20 -4.74 6.65 22.02 0.15 -4.59 16 18 Cl -0.04 -0.78 29.30 -2.72 -0.08 -0.86 16 19 C 0.06 1.41 12.02 85.25 1.02 2.44 16 20 N -0.32 -10.19 12.42 -56.98 -0.71 -10.90 16 21 H 0.22 7.90 7.80 -4.41 -0.03 7.87 16 22 H 0.07 3.45 6.59 -2.39 -0.02 3.44 16 23 H 0.08 2.66 8.12 -2.39 -0.02 2.64 16 24 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 25 H 0.04 1.62 8.07 -2.38 -0.02 1.60 16 26 H 0.04 1.68 8.04 -2.38 -0.02 1.66 16 27 H 0.12 2.92 8.07 -2.38 -0.02 2.90 16 28 H 0.08 2.60 8.14 -2.39 -0.02 2.59 16 29 H 0.21 3.19 8.06 -2.91 -0.02 3.16 16 30 H 0.21 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -62.69 289.01 6.22 -56.47 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.13 Total: 10.29 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 6.69 Total: -9.12 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -3.55 Total: -102.00 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -62.69 6.22 -56.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491637775.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.677 kcal (2) G-P(sol) polarization free energy of solvation -62.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds