Wall clock time and date at job start Sun Mar 29 2020 23:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47130 * 19.00356 * 3 2 1 5 5 C 1.36937 * 120.00333 * 270.43875 * 4 3 2 6 6 H 1.07998 * 120.00383 * 191.70725 * 5 4 3 7 7 C 1.38809 * 119.99722 * 11.70680 * 5 4 3 8 8 N 1.31622 * 120.00150 * 18.35010 * 7 5 4 9 9 Si 1.86800 * 120.00123 * 198.35030 * 7 5 4 10 10 H 1.48505 * 109.46956 * 84.98225 * 9 7 5 11 11 H 1.48492 * 109.47382 * 204.98376 * 9 7 5 12 12 H 1.48499 * 109.47108 * 324.98751 * 9 7 5 13 13 C 1.46506 * 119.99845 * 90.43995 * 4 3 2 14 14 C 1.50698 * 109.46880 * 269.99768 * 13 4 3 15 15 N 1.30856 * 125.89741 * 270.28395 * 14 13 4 16 16 N 1.40080 * 108.22327 * 180.13820 * 15 14 13 17 17 C 1.46502 * 126.03343 * 179.87743 * 16 15 14 18 18 C 1.35041 * 107.93132 * 359.62054 * 16 15 14 19 19 C 1.35373 * 107.72488 * 0.22129 * 18 16 15 20 20 Cl 1.73603 * 126.04656 * 179.97438 * 19 18 16 21 21 H 4.40634 * 5.51382 * 180.02562 * 4 1 2 22 22 H 1.08996 * 109.47386 * 259.00137 * 3 2 1 23 23 H 1.09007 * 109.46887 * 139.00406 * 3 2 1 24 24 H 0.97002 * 120.00484 * 180.02562 * 8 7 5 25 25 H 1.09005 * 109.47229 * 150.00162 * 13 4 3 26 26 H 1.09000 * 109.47257 * 29.99633 * 13 4 3 27 27 H 1.09004 * 109.47220 * 269.69484 * 17 16 15 28 28 H 1.09002 * 109.46917 * 29.69015 * 17 16 15 29 29 H 1.09000 * 109.47055 * 149.69145 * 17 16 15 30 30 H 1.08000 * 126.13650 * 180.21122 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3050 -0.4498 5 6 3.3550 -2.3043 0.4602 6 1 3.8886 -3.1957 0.1650 7 6 2.8923 -2.1717 1.7622 8 7 1.9539 -1.2917 2.0407 9 14 3.6013 -3.2420 3.1191 10 1 4.8405 -2.6163 3.6466 11 1 2.6083 -3.3742 4.2152 12 1 3.9190 -4.5863 2.5741 13 6 3.3883 -1.5417 -1.8732 14 6 2.1359 -2.0677 -2.5257 15 7 1.7984 -3.3273 -2.6345 16 7 0.5703 -3.3954 -3.3048 17 6 -0.1637 -4.6191 -3.6365 18 6 0.1798 -2.1337 -3.5863 19 6 1.1305 -1.2931 -3.1150 20 17 1.1069 0.4394 -3.2232 21 1 -1.0498 -0.0003 -0.0003 22 1 3.0093 0.1969 1.0087 23 1 3.0089 0.7765 -0.6742 24 1 1.6308 -1.1987 2.9506 25 1 4.1896 -2.2725 -1.9830 26 1 3.6814 -0.6066 -2.3504 27 1 0.1442 -4.9721 -4.6208 28 1 0.0520 -5.3853 -2.8919 29 1 -1.2335 -4.4104 -3.6437 30 1 -0.7281 -1.8468 -4.0961 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491769626.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:05 Heat of formation + Delta-G solvation = 165.577471 kcal Electronic energy + Delta-G solvation = -16631.144680 eV Core-core repulsion = 13878.494324 eV Total energy + Delta-G solvation = -2752.650356 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 253.068 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63082 -36.14808 -35.74388 -33.06541 -31.28943 -30.98410 -29.43446 -27.52427 -25.94322 -24.85689 -21.74723 -20.74368 -19.23666 -17.37582 -16.68578 -16.22424 -15.22922 -14.83582 -14.14234 -13.90120 -13.62954 -13.44500 -12.91961 -12.56771 -12.52184 -11.97244 -11.48710 -11.34333 -10.97231 -10.91383 -10.67706 -10.60696 -10.17859 -9.98070 -9.72685 -8.88133 -8.78789 -8.58731 -8.14956 -7.79111 -7.04512 -5.69246 -3.11760 2.24905 2.53229 3.21428 3.38679 3.42756 3.48448 3.49927 4.41604 4.59837 4.75675 4.86726 5.06794 5.26464 5.37161 5.49987 5.60455 5.78206 5.85191 6.07712 6.13550 6.46828 6.62028 6.83480 7.04049 7.32758 7.43430 7.63253 7.82615 8.24161 8.32550 9.18304 9.49195 9.80942 10.24451 11.30965 Molecular weight = 253.07amu Principal moments of inertia in cm(-1) A = 0.021523 B = 0.009093 C = 0.007560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.636288 B = 3078.393276 C = 3702.887702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 C -0.071 4.071 3 C 0.269 3.731 4 N -0.571 5.571 5 C -0.252 4.252 6 H 0.079 0.921 7 C 0.000 4.000 8 N -0.892 5.892 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.294 1.294 12 H -0.281 1.281 13 C 0.214 3.786 14 C 0.091 3.909 15 N -0.276 5.276 16 N -0.383 5.383 17 C 0.110 3.890 18 C 0.051 3.949 19 C -0.162 4.162 20 Cl -0.051 7.051 21 H 0.180 0.820 22 H 0.099 0.901 23 H 0.036 0.964 24 H 0.253 0.747 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -0.254 -11.438 11.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.331 4.331 2 C -0.074 4.074 3 C 0.145 3.855 4 N -0.290 5.290 5 C -0.381 4.381 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.536 5.536 9 Si 0.737 3.263 10 H -0.213 1.213 11 H -0.220 1.220 12 H -0.207 1.207 13 C 0.084 3.916 14 C -0.080 4.080 15 N -0.098 5.098 16 N -0.166 5.166 17 C -0.032 4.032 18 C -0.096 4.096 19 C -0.201 4.201 20 Cl -0.023 7.023 21 H 0.198 0.802 22 H 0.117 0.883 23 H 0.054 0.946 24 H 0.064 0.936 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.914 -1.441 -11.041 11.510 hybrid contribution -0.921 0.141 0.674 1.149 sum -3.835 -1.300 -10.367 11.130 Atomic orbital electron populations 1.23850 0.95028 1.05789 1.08444 1.23859 0.94830 0.95245 0.93429 1.18003 0.83277 0.84829 0.99414 1.44466 1.74206 1.10533 0.99747 1.19324 1.29616 0.99566 0.89611 0.90303 1.24903 0.97251 0.99196 0.98466 1.70094 1.26931 1.37711 1.18858 0.86235 0.78311 0.79963 0.81841 1.21344 1.22030 1.20696 1.19609 0.89513 0.98104 0.84396 1.24045 1.00007 0.89144 0.94836 1.77528 0.96276 1.19540 1.16469 1.48291 1.17940 1.04904 1.45423 1.21722 0.95090 0.84673 1.01683 1.21933 0.99854 0.84831 1.02995 1.20607 0.99917 0.85647 1.13923 1.98281 1.98468 1.07992 1.97556 0.80239 0.88290 0.94618 0.93578 0.91395 0.91438 0.91233 0.89415 0.90112 0.81289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -7.51 19.20 29.55 0.57 -6.94 16 2 C -0.07 -1.76 10.11 -37.12 -0.38 -2.13 16 3 C 0.27 6.50 5.51 -6.83 -0.04 6.47 16 4 N -0.57 -14.08 2.47 -177.95 -0.44 -14.52 16 5 C -0.25 -6.84 9.73 -15.06 -0.15 -6.99 16 6 H 0.08 2.14 7.87 -52.49 -0.41 1.73 16 7 C 0.00 0.00 5.03 -17.43 -0.09 -0.09 16 8 N -0.89 -25.55 8.81 55.49 0.49 -25.06 16 9 Si 0.91 22.00 29.59 -169.99 -5.03 16.97 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.21 4.52 6.13 -5.19 -0.03 4.49 16 14 C 0.09 1.93 6.80 -82.37 -0.56 1.37 16 15 N -0.28 -5.89 12.57 33.69 0.42 -5.47 16 16 N -0.38 -6.59 4.02 -68.12 -0.27 -6.87 16 17 C 0.11 1.27 11.47 59.85 0.69 1.96 16 18 C 0.05 0.84 11.47 -17.16 -0.20 0.64 16 19 C -0.16 -3.08 6.50 -39.97 -0.26 -3.34 16 20 Cl -0.05 -0.89 27.90 -51.86 -1.45 -2.34 16 21 H 0.18 3.83 7.80 -54.10 -0.42 3.41 16 22 H 0.10 2.60 6.34 -51.93 -0.33 2.27 16 23 H 0.04 0.77 7.89 -51.93 -0.41 0.36 16 24 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.07 1.39 8.03 -51.93 -0.42 0.97 16 26 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.17 2.12 8.06 -52.49 -0.42 1.69 16 LS Contribution 285.14 15.07 4.30 4.30 Total: -1.00 -32.38 285.14 -5.64 -38.02 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -3.22 Total: -0.47 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -0.44 Total: -4.56 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.20 Total: -51.92 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.45 Total: -2.34 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.38 -5.64 -38.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491769626.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.599 kcal (2) G-P(sol) polarization free energy of solvation -32.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds