Wall clock time and date at job start Sun Mar 29 2020 23:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48505 * 109.47357 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47097 * 299.99829 * 3 2 1 6 6 H 1.48499 * 109.47290 * 59.99949 * 3 2 1 7 7 C 1.37881 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99994 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99604 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46671 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47011 * 179.97438 * 10 9 7 12 12 O 1.21291 * 119.99745 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00273 * 179.97438 * 11 10 9 14 14 C 1.40050 * 120.00333 * 185.53385 * 13 11 10 15 15 C 1.38892 * 120.04951 * 24.82089 * 14 13 11 16 16 C 1.38139 * 120.05229 * 179.97438 * 15 14 13 17 17 C 1.38230 * 120.15661 * 0.02562 * 16 15 14 18 18 C 1.38711 * 120.10234 * 0.02562 * 17 16 15 19 19 O 1.35962 * 120.03058 * 179.70035 * 18 17 16 20 20 C 1.38774 * 119.94245 * 359.97438 * 18 17 16 21 21 F 1.35108 * 120.07432 * 180.02562 * 20 18 17 22 22 H 0.97005 * 119.99768 * 0.02562 * 1 2 3 23 23 H 1.08991 * 109.47478 * 59.99902 * 9 7 2 24 24 H 1.08998 * 109.47253 * 299.99594 * 9 7 2 25 25 H 1.09005 * 109.47134 * 59.99848 * 10 9 7 26 26 H 1.08998 * 109.47196 * 299.99929 * 10 9 7 27 27 H 0.97006 * 120.00281 * 5.53664 * 13 11 10 28 28 H 1.08005 * 119.97233 * 359.97438 * 15 14 13 29 29 H 1.08007 * 119.91664 * 180.02562 * 16 15 14 30 30 H 1.08005 * 119.95036 * 179.97438 * 17 16 15 31 31 H 0.96694 * 113.99982 * 89.99911 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 8 0.2787 -4.9671 0.0011 13 7 2.1654 -6.1344 0.0008 14 6 1.4700 -7.3444 -0.1156 15 6 0.2236 -7.3742 -0.7277 16 6 -0.4622 -8.5678 -0.8430 17 6 0.0887 -9.7356 -0.3497 18 6 1.3326 -9.7132 0.2638 19 8 1.8704 -10.8617 0.7540 20 6 2.0252 -8.5164 0.3819 21 9 3.2371 -8.4915 0.9784 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8903 25 1 2.8719 -3.6043 0.8905 26 1 2.8718 -3.6044 -0.8894 27 1 3.1322 -6.1364 0.0811 28 1 -0.2098 -6.4634 -1.1139 29 1 -1.4311 -8.5885 -1.3198 30 1 -0.4505 -10.6669 -0.4412 31 1 2.4131 -11.3453 0.1164 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573327148.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:25 Heat of formation + Delta-G solvation = -129.766910 kcal Electronic energy + Delta-G solvation = -17712.648033 eV Core-core repulsion = 14486.561458 eV Total energy + Delta-G solvation = -3226.086576 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.99487 -41.62996 -40.09052 -37.90090 -35.70001 -35.58424 -33.12347 -30.92762 -30.40110 -27.74500 -24.81766 -23.84628 -23.02872 -21.37685 -19.73416 -19.13620 -18.45441 -18.31330 -17.58837 -16.97329 -16.77235 -16.48947 -16.43919 -15.84728 -15.45066 -15.08617 -14.67102 -14.41771 -14.18790 -13.47504 -13.34996 -13.29859 -12.95515 -12.84325 -12.46658 -11.96302 -11.86121 -11.67039 -11.62477 -11.29005 -10.76508 -10.57744 -9.71529 -9.23463 -8.18999 -6.32471 -0.03966 0.01664 1.42979 1.43731 1.50032 1.56952 1.84659 2.42890 2.48457 2.90144 3.14801 3.29337 3.68982 3.83456 4.00095 4.25896 4.39519 4.47264 4.49038 4.79598 4.97678 5.01663 5.11148 5.25528 5.37100 5.49339 5.60510 5.76029 5.83854 6.15869 6.25695 6.70857 6.84826 7.03113 7.37818 8.93698 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.051530 B = 0.003967 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.238924 B = 7056.504443 C = 7517.919562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.972 3.028 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.117 4.117 11 C 0.516 3.484 12 O -0.551 6.551 13 N -0.664 5.664 14 C 0.124 3.876 15 C -0.140 4.140 16 C -0.081 4.081 17 C -0.131 4.131 18 C 0.098 3.902 19 O -0.494 6.494 20 C 0.019 3.981 21 F -0.138 7.138 22 H 0.263 0.737 23 H -0.011 1.011 24 H -0.014 1.014 25 H 0.108 0.892 26 H 0.113 0.887 27 H 0.427 0.573 28 H 0.134 0.866 29 H 0.164 0.836 30 H 0.172 0.828 31 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 -21.225 -2.865 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.157 4.157 11 C 0.307 3.693 12 O -0.428 6.428 13 N -0.309 5.309 14 C 0.027 3.973 15 C -0.160 4.160 16 C -0.100 4.100 17 C -0.150 4.150 18 C 0.052 3.948 19 O -0.308 6.308 20 C -0.004 4.004 21 F -0.116 7.116 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.004 0.996 25 H 0.126 0.874 26 H 0.131 0.869 27 H 0.265 0.735 28 H 0.152 0.848 29 H 0.181 0.819 30 H 0.189 0.811 31 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 4.558 -20.884 -2.340 21.503 hybrid contribution 0.949 0.977 -0.127 1.368 sum 5.507 -19.906 -2.467 20.801 Atomic orbital electron populations 1.70169 1.08211 1.27754 1.51446 1.26090 0.95708 1.03815 0.94644 0.85296 0.79305 0.78256 0.77527 1.17720 1.20601 1.20756 1.21724 0.94034 0.91551 1.50783 0.90604 1.18720 0.93669 0.92097 0.95197 1.21699 0.99519 0.88984 1.05478 1.21634 0.88129 0.86041 0.73511 1.90636 1.16002 1.87668 1.48463 1.43554 1.11733 1.03334 1.72317 1.17960 0.95076 0.84855 0.99391 1.21478 0.93936 1.00763 0.99837 1.21337 1.00635 0.90243 0.97743 1.21607 0.94500 1.00689 0.98187 1.18262 0.93597 0.84673 0.98287 1.84828 1.69707 1.33523 1.42697 1.17904 0.84196 0.94401 1.03872 1.91444 1.41310 1.97196 1.81687 0.92839 0.99236 0.99601 0.87379 0.86921 0.73487 0.84812 0.81878 0.81086 0.72561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.40 13.29 21.45 0.28 -58.11 16 2 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 4 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 8 H 0.08 3.86 7.74 -2.91 -0.02 3.83 16 9 C 0.04 2.20 4.26 29.85 0.13 2.33 16 10 C -0.12 -4.52 5.64 29.85 0.17 -4.35 16 11 C 0.52 19.46 7.64 87.66 0.67 20.13 16 12 O -0.55 -25.34 13.14 -3.06 -0.04 -25.38 16 13 N -0.66 -19.46 5.31 -303.38 -1.61 -21.07 16 14 C 0.12 3.56 6.43 38.14 0.25 3.81 16 15 C -0.14 -4.00 8.72 22.40 0.20 -3.81 16 16 C -0.08 -1.65 10.03 22.24 0.22 -1.43 16 17 C -0.13 -2.26 9.98 22.38 0.22 -2.04 16 18 C 0.10 2.04 6.71 22.51 0.15 2.19 16 19 O -0.49 -8.44 13.37 -93.12 -1.24 -9.68 16 20 C 0.02 0.48 7.31 22.56 0.16 0.64 16 21 F -0.14 -3.55 16.66 44.97 0.75 -2.80 16 22 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 23 H -0.01 -0.65 8.10 -2.39 -0.02 -0.67 16 24 H -0.01 -0.88 8.10 -2.39 -0.02 -0.90 16 25 H 0.11 3.67 8.14 -2.38 -0.02 3.65 16 26 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 27 H 0.43 9.73 8.45 -92.70 -0.78 8.94 16 28 H 0.13 4.60 5.78 -2.91 -0.02 4.58 16 29 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 30 H 0.17 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.41 2.65 9.06 -74.06 -0.67 1.98 16 Total: -1.00 -75.82 281.87 2.76 -73.06 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -0.27 Total: 10.56 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 2.86 Total: -12.38 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -1.33 Total: -79.18 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.28 Total: -35.06 kcal Atomic # 9 Polarization: -3.55 SS G_CDS: 0.75 Total: -2.80 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -75.82 2.76 -73.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573327148.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.706 kcal (2) G-P(sol) polarization free energy of solvation -75.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds