Wall clock time and date at job start Sun Mar 29 2020 23:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41379 * 126.79775 * 2 1 4 4 C 1.35452 * 103.98598 * 180.09429 * 3 2 1 5 5 C 1.50700 * 126.77904 * 179.90838 * 4 3 2 6 6 S 1.81406 * 109.47001 * 89.71154 * 5 4 3 7 7 C 1.81402 * 102.99893 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46788 * 179.97438 * 7 6 5 9 9 C 1.50699 * 115.55333 * 304.61780 * 8 7 6 10 10 H 1.08003 * 120.00007 * 95.17466 * 9 8 7 11 11 C 1.37880 * 120.00295 * 275.17822 * 9 8 7 12 12 N 1.31515 * 119.99894 * 7.10652 * 11 9 8 13 13 Si 1.86790 * 120.00005 * 187.10801 * 11 9 8 14 14 H 1.48507 * 109.46955 * 179.97438 * 13 11 9 15 15 H 1.48505 * 109.47478 * 299.99484 * 13 11 9 16 16 H 1.48504 * 109.47514 * 60.00046 * 13 11 9 17 17 C 1.53002 * 117.50115 * 90.29300 * 8 7 6 18 18 C 1.53007 * 117.49541 * 158.95199 * 8 7 6 19 19 O 1.34043 * 106.44373 * 359.64591 * 4 3 2 20 20 N 1.20925 * 111.56647 * 0.24246 * 19 4 3 21 21 H 1.09003 * 109.47131 * 270.28700 * 1 2 3 22 22 H 1.08995 * 109.47500 * 30.29358 * 1 2 3 23 23 H 1.09001 * 109.46615 * 150.29162 * 1 2 3 24 24 H 1.07998 * 128.01211 * 0.02562 * 3 2 1 25 25 H 1.09000 * 109.47139 * 329.71462 * 5 4 3 26 26 H 1.09000 * 109.47440 * 209.70730 * 5 4 3 27 27 H 1.08999 * 109.47301 * 60.00173 * 7 6 5 28 28 H 1.09003 * 109.46767 * 299.99561 * 7 6 5 29 29 H 0.97008 * 120.00000 * 355.40410 * 12 11 9 30 30 H 1.08995 * 117.49846 * 215.00328 * 17 8 7 31 31 H 1.09001 * 117.49465 * 0.02562 * 17 8 7 32 32 H 1.08996 * 117.49808 * 359.97183 * 18 8 7 33 33 H 1.09005 * 117.49655 * 144.97821 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0022 5 6 4.9021 1.3698 -0.0051 6 16 5.4225 1.6841 1.7041 7 6 6.9768 2.5961 1.4962 8 6 7.5527 2.9421 2.8707 9 6 6.6315 3.7037 3.7886 10 1 6.0347 3.1736 4.5161 11 6 6.5505 5.0772 3.6996 12 7 7.1672 5.7106 2.7259 13 14 5.5647 6.0384 4.9620 14 1 5.6356 7.4877 4.6462 15 1 4.1486 5.5926 4.9281 16 1 6.1268 5.7992 6.3156 17 6 8.5115 1.9350 3.5089 18 6 9.0481 3.2558 2.9514 19 8 3.4538 -0.7252 0.0047 20 7 2.2868 -1.0422 0.0057 21 1 -0.3633 0.0051 1.0277 22 1 -0.3634 0.8873 -0.5183 23 1 -0.3632 -0.8926 -0.5093 24 1 2.0709 2.1743 0.0004 25 1 4.7653 2.3187 -0.5235 26 1 5.6663 0.7837 -0.5155 27 1 6.7876 3.5144 0.9403 28 1 7.6892 1.9796 0.9480 29 1 7.7331 5.2195 2.1098 30 1 8.4759 1.8232 4.5925 31 1 8.7323 1.0261 2.9492 32 1 9.6215 3.2152 2.0254 33 1 9.3655 4.0133 3.6683 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596323720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:25:26 Heat of formation + Delta-G solvation = 71.146969 kcal Electronic energy + Delta-G solvation = -15875.080489 eV Core-core repulsion = 13223.919369 eV Total energy + Delta-G solvation = -2651.161120 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.84308 -36.94862 -34.76721 -33.35231 -31.91175 -28.71408 -28.24623 -27.42049 -24.85082 -23.02421 -21.35709 -20.31713 -19.48055 -17.62295 -17.27568 -16.63332 -15.44119 -14.67209 -14.33488 -13.97976 -13.75451 -13.65637 -13.44554 -13.33121 -13.06874 -12.84887 -12.40933 -11.99256 -11.85096 -11.09488 -11.04929 -10.79408 -10.49055 -10.12507 -9.98165 -9.80693 -9.68482 -9.02744 -8.59689 -8.38991 -8.31410 -6.98280 -6.38019 -4.10698 1.22450 2.12085 2.55030 3.07914 3.28833 3.44328 3.44877 3.63415 4.19390 4.41049 4.50206 4.98499 5.06262 5.09722 5.23546 5.29674 5.36240 5.46852 5.52032 5.70330 5.75311 5.77985 5.94499 6.11584 6.13431 6.24363 6.44705 6.55412 6.78946 7.12809 7.20200 8.18258 8.29860 8.41672 8.84186 9.62738 11.01400 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.024105 B = 0.005614 C = 0.004860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.318053 B = 4986.274052 C = 5759.373228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.014 3.986 3 C -0.218 4.218 4 C 0.003 3.997 5 C -0.039 4.039 6 S -0.194 6.194 7 C -0.041 4.041 8 C 0.032 3.968 9 C -0.561 4.561 10 H 0.055 0.945 11 C 0.031 3.969 12 N -0.906 5.906 13 Si 1.064 2.936 14 H -0.283 1.283 15 H -0.286 1.286 16 H -0.288 1.288 17 C -0.190 4.190 18 C -0.172 4.172 19 O 0.100 5.900 20 N -0.369 5.369 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.174 0.826 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.272 0.728 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.056 -7.149 -6.780 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.144 4.144 3 C -0.242 4.242 4 C -0.061 4.061 5 C -0.187 4.187 6 S 0.035 5.965 7 C -0.190 4.190 8 C 0.031 3.969 9 C -0.599 4.599 10 H 0.074 0.926 11 C -0.175 4.175 12 N -0.541 5.541 13 Si 0.892 3.108 14 H -0.209 1.209 15 H -0.212 1.212 16 H -0.215 1.215 17 C -0.227 4.227 18 C -0.212 4.212 19 O 0.034 5.966 20 N -0.075 5.075 21 H 0.099 0.901 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.191 0.809 25 H 0.127 0.873 26 H 0.114 0.886 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.300 -7.238 -5.463 12.293 hybrid contribution 1.211 -0.306 -1.556 1.996 sum -7.088 -7.543 -7.020 12.507 Atomic orbital electron populations 1.20146 0.85991 1.03530 1.03428 1.23563 0.98977 0.88888 1.02992 1.22409 0.90864 1.01323 1.09630 1.23568 0.96991 0.83599 1.01983 1.21794 0.93258 1.01030 1.02635 1.87457 1.32381 1.73131 1.03519 1.23199 0.93657 0.99844 1.02281 1.18724 0.88949 0.97982 0.91295 1.21174 1.26075 0.93056 1.19612 0.92634 1.25729 0.97917 0.95149 0.98681 1.70768 1.28490 1.40311 1.14487 0.83605 0.75940 0.76087 0.75119 1.20864 1.21249 1.21461 1.22921 1.07791 0.92168 0.99822 1.22838 0.98563 0.98639 1.01131 1.84808 1.21528 1.22565 1.67666 1.73813 0.89326 1.24159 1.20162 0.90126 0.90025 0.90755 0.80884 0.87304 0.88558 0.90444 0.92840 0.91661 0.89932 0.91202 0.91463 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.47 36.01 0.38 -0.32 16 2 C 0.01 0.20 7.33 -82.10 -0.60 -0.41 16 3 C -0.22 -3.01 11.06 -39.38 -0.44 -3.44 16 4 C 0.00 0.04 6.75 -35.30 -0.24 -0.19 16 5 C -0.04 -0.57 6.51 36.01 0.23 -0.34 16 6 S -0.19 -3.81 21.09 -107.50 -2.27 -6.08 16 7 C -0.04 -0.86 5.81 37.16 0.22 -0.64 16 8 C 0.03 0.76 1.01 -155.66 -0.16 0.60 16 9 C -0.56 -14.99 8.13 -34.44 -0.28 -15.27 16 10 H 0.06 1.55 7.82 -52.48 -0.41 1.14 16 11 C 0.03 0.83 5.39 -17.82 -0.10 0.74 16 12 N -0.91 -25.64 13.57 55.43 0.75 -24.89 16 13 Si 1.06 24.54 29.91 -169.99 -5.08 19.46 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 17 C -0.19 -4.02 9.93 -26.69 -0.27 -4.29 16 18 C -0.17 -3.78 8.75 -26.69 -0.23 -4.02 16 19 O 0.10 1.61 11.20 17.17 0.19 1.80 16 20 N -0.37 -5.83 12.07 33.42 0.40 -5.43 16 21 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 25 H 0.11 1.45 8.14 -51.92 -0.42 1.03 16 26 H 0.10 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.08 1.70 7.73 -51.92 -0.40 1.30 16 28 H 0.05 0.99 8.10 -51.92 -0.42 0.57 16 29 H 0.27 7.57 6.12 -40.82 -0.25 7.32 16 30 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.09 2.05 8.14 -51.93 -0.42 1.63 16 LS Contribution 301.39 15.07 4.54 4.54 Total: -1.00 -29.62 301.39 -7.45 -37.06 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.51 Total: 1.10 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -1.48 Total: -27.58 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 1.16 Total: -30.32 kcal Atomic # 8 Polarization: 1.61 SS G_CDS: 0.19 Total: 1.80 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.08 Total: 19.46 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -2.27 Total: -6.08 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.62 -7.45 -37.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596323720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.211 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds