Wall clock time and date at job start Sun Mar 29 2020 23:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99894 * 2 1 4 4 H 1.48500 * 109.47305 * 269.99923 * 3 2 1 5 5 H 1.48495 * 109.46998 * 30.00491 * 3 2 1 6 6 H 1.48503 * 109.46895 * 150.00138 * 3 2 1 7 7 C 1.37876 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99636 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47046 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00440 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99673 * 179.97438 * 11 10 9 14 14 C 1.40134 * 119.99502 * 185.53099 * 13 11 10 15 15 C 1.38781 * 120.07821 * 24.81278 * 14 13 11 16 16 C 1.38172 * 120.02668 * 179.97438 * 15 14 13 17 17 C 1.38291 * 120.17430 * 359.97438 * 16 15 14 18 18 C 1.38410 * 120.15606 * 359.78754 * 17 16 15 19 19 F 1.35096 * 120.01494 * 180.25110 * 18 17 16 20 20 C 1.38746 * 119.97294 * 0.46713 * 18 17 16 21 21 O 1.36032 * 120.09210 * 179.78877 * 20 18 17 22 22 H 0.97002 * 119.99822 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47399 * 59.99619 * 9 7 2 24 24 H 1.09006 * 109.46645 * 299.99546 * 9 7 2 25 25 H 1.09003 * 109.47444 * 59.99639 * 10 9 7 26 26 H 1.09001 * 109.47204 * 299.99626 * 10 9 7 27 27 H 0.96999 * 120.00392 * 5.52836 * 13 11 10 28 28 H 1.08007 * 119.98997 * 359.95215 * 15 14 13 29 29 H 1.07993 * 119.91361 * 179.97438 * 16 15 14 30 30 H 1.08001 * 119.92054 * 180.02562 * 17 16 15 31 31 H 0.96706 * 113.99842 * 269.72704 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 6 1.4917 -4.9671 -0.0020 12 8 0.2789 -4.9672 -0.0020 13 7 2.1657 -6.1343 -0.0024 14 6 1.4699 -7.3450 -0.1199 15 6 0.2248 -7.3751 -0.7321 16 6 -0.4600 -8.5695 -0.8479 17 6 0.0920 -9.7379 -0.3552 18 6 1.3354 -9.7172 0.2524 19 9 1.8742 -10.8611 0.7281 20 6 2.0263 -8.5204 0.3767 21 8 3.2467 -8.4966 0.9773 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5574 0.8881 25 1 2.8713 -3.6047 0.8890 26 1 2.8725 -3.6039 -0.8910 27 1 3.1323 -6.1363 0.0786 28 1 -0.2092 -6.4645 -1.1181 29 1 -1.4290 -8.5908 -1.3243 30 1 -0.4468 -10.6693 -0.4483 31 1 3.2125 -8.3432 1.9315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600443517.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:27 Heat of formation + Delta-G solvation = -105.813877 kcal Electronic energy + Delta-G solvation = -17708.939276 eV Core-core repulsion = 14483.891382 eV Total energy + Delta-G solvation = -3225.047894 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.01141 -40.61840 -38.70989 -36.82173 -34.57112 -33.59605 -31.28987 -29.82735 -29.30278 -25.88470 -23.39584 -22.86009 -21.45905 -19.88135 -18.82299 -17.88682 -17.42229 -16.54305 -16.17534 -15.63080 -15.53594 -15.37096 -15.02600 -14.47840 -14.35999 -13.78099 -13.42975 -12.91037 -12.54454 -12.26289 -12.08980 -11.93739 -11.28874 -11.04890 -10.98815 -10.66287 -10.45952 -10.08006 -9.77462 -9.33084 -9.15994 -8.74414 -8.39766 -8.14247 -6.03205 -4.08133 0.91437 1.02650 2.85313 3.06673 3.29544 3.36173 3.38479 3.44687 3.83748 4.24357 4.41853 4.72471 4.86891 5.09675 5.22058 5.32269 5.45374 5.68790 5.92172 5.97137 6.04925 6.11593 6.26241 6.39506 6.72326 6.74489 7.35656 7.50851 7.65231 7.73438 7.97028 8.25756 8.41994 8.99429 9.56163 11.07660 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.052374 B = 0.003929 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.487714 B = 7123.878417 C = 7572.931077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.530 4.530 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.510 3.490 12 O -0.508 6.508 13 N -0.676 5.676 14 C 0.170 3.830 15 C -0.133 4.133 16 C -0.074 4.074 17 C -0.170 4.170 18 C 0.094 3.906 19 F -0.134 7.134 20 C 0.026 3.974 21 O -0.485 6.485 22 H 0.262 0.738 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.415 0.585 28 H 0.160 0.840 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.387 -18.033 0.320 18.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.568 4.568 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.300 3.700 12 O -0.381 6.381 13 N -0.321 5.321 14 C 0.072 3.928 15 C -0.154 4.154 16 C -0.093 4.093 17 C -0.190 4.190 18 C 0.074 3.926 19 F -0.113 7.113 20 C -0.022 4.022 21 O -0.294 6.294 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.252 0.748 28 H 0.177 0.823 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.616 -17.930 -0.229 18.121 hybrid contribution 0.939 0.711 0.687 1.363 sum 3.555 -17.219 0.457 17.588 Atomic orbital electron populations 1.69988 1.06077 1.26727 1.49948 1.25015 0.94833 0.99286 0.95141 0.86574 0.79773 0.83384 0.78127 1.20617 1.21183 1.19850 1.21183 0.92978 0.90871 1.51774 0.92501 1.18932 0.93114 0.89288 0.98791 1.21945 1.00913 0.90880 1.03126 1.21961 0.88834 0.85351 0.73805 1.90642 1.14325 1.87077 1.46098 1.43979 1.11368 1.03858 1.72932 1.18040 0.93221 0.85058 0.96457 1.21587 0.94131 1.00295 0.99367 1.20976 0.99866 0.90861 0.97571 1.21030 0.94615 1.00353 1.03006 1.17731 0.92977 0.81431 1.00469 1.91483 1.85955 1.47603 1.86262 1.17959 0.88678 0.90953 1.04653 1.84884 1.23920 1.94338 1.26220 0.92860 0.95644 0.95663 0.89685 0.89508 0.74808 0.82305 0.84366 0.84502 0.75657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.04 0.93 4.26 -27.89 -0.12 0.81 16 10 C -0.13 -2.42 5.64 -27.89 -0.16 -2.58 16 11 C 0.51 9.05 7.64 -10.98 -0.08 8.96 16 12 O -0.51 -10.77 13.15 5.55 0.07 -10.69 16 13 N -0.68 -9.40 5.29 -9.75 -0.05 -9.45 16 14 C 0.17 2.37 6.44 -83.50 -0.54 1.83 16 15 C -0.13 -1.88 8.72 -39.41 -0.34 -2.22 16 16 C -0.07 -0.83 10.04 -39.59 -0.40 -1.23 16 17 C -0.17 -1.83 10.02 -39.50 -0.40 -2.22 16 18 C 0.09 1.16 7.30 -39.33 -0.29 0.87 16 19 F -0.13 -1.69 17.11 2.25 0.04 -1.65 16 20 C 0.03 0.33 6.73 -39.03 -0.26 0.07 16 21 O -0.48 -5.34 12.78 -19.84 -0.25 -5.60 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.71 8.10 -51.93 -0.42 0.28 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 26 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.42 4.66 8.34 -40.82 -0.34 4.32 16 28 H 0.16 2.56 5.79 -52.48 -0.30 2.26 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 31 H 0.39 2.74 9.07 45.56 0.41 3.15 16 LS Contribution 281.67 15.07 4.24 4.24 Total: -1.00 -32.78 281.67 -5.53 -38.32 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -2.30 Total: 3.59 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.00 Total: -8.95 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.68 Total: -35.39 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.18 Total: -16.29 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.78 -5.53 -38.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600443517.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.498 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds