Wall clock time and date at job start Sun Mar 29 2020 23:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99894 * 2 1 4 4 H 1.48500 * 109.47305 * 269.99923 * 3 2 1 5 5 H 1.48495 * 109.46998 * 30.00491 * 3 2 1 6 6 H 1.48503 * 109.46895 * 150.00138 * 3 2 1 7 7 C 1.37876 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00310 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99636 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47046 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47200 * 179.97438 * 10 9 7 12 12 O 1.21287 * 120.00440 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99673 * 179.97438 * 11 10 9 14 14 C 1.40134 * 119.99502 * 185.53099 * 13 11 10 15 15 C 1.38781 * 120.07821 * 24.81278 * 14 13 11 16 16 C 1.38172 * 120.02668 * 179.97438 * 15 14 13 17 17 C 1.38291 * 120.17430 * 359.97438 * 16 15 14 18 18 C 1.38410 * 120.15606 * 359.78754 * 17 16 15 19 19 F 1.35096 * 120.01494 * 180.25110 * 18 17 16 20 20 C 1.38746 * 119.97294 * 0.46713 * 18 17 16 21 21 O 1.36032 * 120.09210 * 179.78877 * 20 18 17 22 22 H 0.97002 * 119.99822 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47399 * 59.99619 * 9 7 2 24 24 H 1.09006 * 109.46645 * 299.99546 * 9 7 2 25 25 H 1.09003 * 109.47444 * 59.99639 * 10 9 7 26 26 H 1.09001 * 109.47204 * 299.99626 * 10 9 7 27 27 H 0.96999 * 120.00392 * 5.52836 * 13 11 10 28 28 H 1.08007 * 119.98997 * 359.95215 * 15 14 13 29 29 H 1.07993 * 119.91361 * 179.97438 * 16 15 14 30 30 H 1.08001 * 119.92054 * 180.02562 * 17 16 15 31 31 H 0.96706 * 113.99842 * 269.72704 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6620 -0.0015 11 6 1.4917 -4.9671 -0.0020 12 8 0.2789 -4.9672 -0.0020 13 7 2.1657 -6.1343 -0.0024 14 6 1.4699 -7.3450 -0.1199 15 6 0.2248 -7.3751 -0.7321 16 6 -0.4600 -8.5695 -0.8479 17 6 0.0920 -9.7379 -0.3552 18 6 1.3354 -9.7172 0.2524 19 9 1.8742 -10.8611 0.7281 20 6 2.0263 -8.5204 0.3767 21 8 3.2467 -8.4966 0.9773 22 1 -0.4850 0.8401 0.0004 23 1 0.6247 -2.5563 -0.8919 24 1 0.6241 -2.5574 0.8881 25 1 2.8713 -3.6047 0.8890 26 1 2.8725 -3.6039 -0.8910 27 1 3.1323 -6.1363 0.0786 28 1 -0.2092 -6.4645 -1.1181 29 1 -1.4290 -8.5908 -1.3243 30 1 -0.4468 -10.6693 -0.4483 31 1 3.2125 -8.3432 1.9315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600443517.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:26 Heat of formation + Delta-G solvation = -129.708958 kcal Electronic energy + Delta-G solvation = -17709.975445 eV Core-core repulsion = 14483.891382 eV Total energy + Delta-G solvation = -3226.084063 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.96459 -41.79515 -39.89813 -37.73458 -35.84295 -35.55845 -33.12636 -30.83382 -30.44809 -27.72017 -24.77633 -23.87157 -23.00742 -21.27722 -19.78868 -18.94259 -18.91200 -18.05730 -17.35106 -16.84657 -16.72043 -16.54682 -16.39302 -16.17862 -15.30219 -15.12922 -14.61736 -14.40732 -14.22020 -13.53307 -13.32605 -13.21640 -12.87153 -12.81348 -12.48726 -12.00062 -11.93090 -11.65480 -11.59827 -11.29966 -10.73234 -10.55919 -9.70981 -9.20942 -8.18083 -6.31513 -0.03644 0.02164 1.43646 1.45451 1.53463 1.56296 1.88018 2.43659 2.46719 2.90905 3.15752 3.32451 3.74560 3.89828 3.96712 4.25790 4.34715 4.49571 4.51556 4.77545 4.98269 5.01410 5.07066 5.28306 5.36900 5.50612 5.62238 5.76113 5.85010 6.17053 6.34450 6.58025 6.86180 7.08139 7.38861 8.94335 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.052374 B = 0.003929 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.487714 B = 7123.878417 C = 7572.931077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.041 3.959 10 C -0.117 4.117 11 C 0.515 3.485 12 O -0.552 6.552 13 N -0.657 5.657 14 C 0.145 3.855 15 C -0.152 4.152 16 C -0.070 4.070 17 C -0.154 4.154 18 C 0.083 3.917 19 F -0.135 7.135 20 C 0.035 3.965 21 O -0.489 6.489 22 H 0.263 0.737 23 H -0.013 1.013 24 H -0.013 1.013 25 H 0.111 0.889 26 H 0.110 0.890 27 H 0.429 0.571 28 H 0.133 0.867 29 H 0.165 0.835 30 H 0.168 0.832 31 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 -19.155 0.439 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.582 4.582 8 H 0.094 0.906 9 C 0.003 3.997 10 C -0.157 4.157 11 C 0.306 3.694 12 O -0.429 6.429 13 N -0.302 5.302 14 C 0.048 3.952 15 C -0.172 4.172 16 C -0.088 4.088 17 C -0.173 4.173 18 C 0.062 3.938 19 F -0.114 7.114 20 C -0.013 4.013 21 O -0.301 6.301 22 H 0.071 0.929 23 H 0.006 0.994 24 H 0.005 0.995 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.269 0.731 28 H 0.151 0.849 29 H 0.182 0.818 30 H 0.186 0.814 31 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 4.439 -19.099 -0.096 19.608 hybrid contribution 0.369 0.928 0.658 1.196 sum 4.809 -18.171 0.562 18.805 Atomic orbital electron populations 1.70159 1.08207 1.27792 1.51436 1.26075 0.95678 1.03766 0.94659 0.85364 0.78715 0.77973 0.78464 1.19821 1.21287 1.17982 1.21702 0.94039 0.91595 1.50819 0.90601 1.18713 0.93686 0.92124 0.95152 1.21687 0.99470 0.89052 1.05473 1.21628 0.88092 0.86134 0.73574 1.90643 1.16078 1.87712 1.48469 1.43537 1.11865 1.02962 1.71873 1.18129 0.93699 0.85190 0.98169 1.21547 0.94768 1.00549 1.00365 1.21229 1.00600 0.89902 0.97098 1.21360 0.93877 1.01247 1.00808 1.17908 0.93607 0.81241 1.00999 1.91484 1.86064 1.47515 1.86339 1.17909 0.88784 0.90533 1.04106 1.84832 1.23122 1.94273 1.27831 0.92862 0.99442 0.99490 0.87132 0.87203 0.73132 0.84936 0.81787 0.81403 0.73470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.95 13.29 21.45 0.28 -57.67 16 2 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 3 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.54 -29.91 9.11 25.60 0.23 -29.67 16 8 H 0.08 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.04 2.17 4.26 29.85 0.13 2.29 16 10 C -0.12 -4.36 5.64 29.85 0.17 -4.20 16 11 C 0.52 18.52 7.64 87.66 0.67 19.19 16 12 O -0.55 -24.58 13.15 -3.05 -0.04 -24.62 16 13 N -0.66 -17.77 5.29 -303.15 -1.60 -19.37 16 14 C 0.14 3.94 6.44 38.18 0.25 4.19 16 15 C -0.15 -4.28 8.72 22.38 0.20 -4.08 16 16 C -0.07 -1.45 10.04 22.27 0.22 -1.23 16 17 C -0.15 -2.87 10.02 22.32 0.22 -2.64 16 18 C 0.08 1.84 7.30 22.43 0.16 2.00 16 19 F -0.14 -3.07 17.11 44.97 0.77 -2.30 16 20 C 0.04 0.83 6.73 22.62 0.15 0.98 16 21 O -0.49 -9.69 12.78 -93.92 -1.20 -10.89 16 22 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 23 H -0.01 -0.77 8.10 -2.39 -0.02 -0.79 16 24 H -0.01 -0.80 8.10 -2.38 -0.02 -0.82 16 25 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 26 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 27 H 0.43 8.87 8.34 -92.71 -0.77 8.10 16 28 H 0.13 4.50 5.79 -2.91 -0.02 4.48 16 29 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 30 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 31 H 0.41 4.78 9.07 -74.05 -0.67 4.11 16 Total: -1.00 -73.33 281.67 2.84 -70.49 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -0.26 Total: 11.95 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 2.86 Total: -12.94 kcal Atomic # 7 Polarization: -75.72 SS G_CDS: -1.32 Total: -77.04 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -1.24 Total: -35.51 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.77 Total: -2.30 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -73.33 2.84 -70.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600443517.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.223 kcal (2) G-P(sol) polarization free energy of solvation -73.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds