Wall clock time and date at job start Sun Mar 29 2020 23:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33819 * 124.52062 * 2 1 4 4 C 1.37468 * 115.10203 * 179.77208 * 3 2 1 5 5 C 1.50700 * 123.35488 * 180.27543 * 4 3 2 6 6 C 1.36648 * 113.29711 * 0.45330 * 4 3 2 7 7 C 1.46586 * 125.46093 * 179.83458 * 6 4 3 8 8 O 1.21706 * 119.99656 * 359.72502 * 7 6 4 9 9 N 1.34768 * 120.00138 * 179.72121 * 7 6 4 10 10 C 1.46500 * 120.00056 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46845 * 35.00845 * 10 9 7 12 12 C 1.52997 * 109.47473 * 275.00296 * 10 9 7 13 13 C 1.50706 * 109.47187 * 154.99900 * 10 9 7 14 14 H 1.07998 * 119.99629 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99955 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00308 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99908 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46848 * 60.00326 * 17 15 13 19 19 H 1.48500 * 109.47035 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47237 * 300.00475 * 17 15 13 21 21 S 1.70614 * 124.52435 * 180.02562 * 2 1 3 22 22 H 1.09006 * 109.47033 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47617 * 299.99405 * 1 2 3 24 24 H 1.08993 * 109.47599 * 59.99888 * 1 2 3 25 25 H 1.08002 * 122.44797 * 0.04789 * 3 2 1 26 26 H 1.09004 * 109.47242 * 270.20228 * 5 4 3 27 27 H 1.08999 * 109.46963 * 30.19818 * 5 4 3 28 28 H 1.08995 * 109.47711 * 150.19844 * 5 4 3 29 29 H 0.97001 * 120.00396 * 0.02562 * 9 7 6 30 30 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 31 31 H 1.09001 * 109.46832 * 299.99948 * 12 10 9 32 32 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 33 33 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 0.0050 5 6 4.6448 1.9838 0.0119 6 6 3.9493 -0.4490 -0.0009 7 6 5.3124 -0.9881 -0.0011 8 8 6.2659 -0.2318 -0.0008 9 7 5.5097 -2.3213 -0.0016 10 6 6.8720 -2.8601 -0.0012 11 1 7.5192 -2.2112 0.5889 12 6 7.3932 -2.9302 -1.4380 13 6 6.8653 -4.2426 0.5987 14 1 5.9388 -4.6765 0.9447 15 6 8.0417 -4.9537 0.7049 16 7 9.1698 -4.4255 0.2832 17 14 8.0332 -6.6676 1.4479 18 1 7.1512 -7.5512 0.6439 19 1 9.4141 -7.2137 1.4484 20 1 7.5276 -6.6000 2.8426 21 16 2.4739 -1.4057 -0.0006 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8428 2.0965 0.0008 26 1 4.8931 2.2556 -1.0141 27 1 4.2375 2.8524 0.5293 28 1 5.5441 1.6438 0.5254 29 1 4.7498 -2.9241 -0.0021 30 1 7.3981 -1.9303 -1.8719 31 1 6.7460 -3.5791 -2.0280 32 1 8.4070 -3.3307 -1.4376 33 1 9.9975 -4.9256 0.3582 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601023094.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:29:38 Heat of formation + Delta-G solvation = -22.558632 kcal Electronic energy + Delta-G solvation = -16190.935114 eV Core-core repulsion = 13535.710614 eV Total energy + Delta-G solvation = -2655.224500 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.23944 -37.71214 -34.78866 -32.59453 -32.38221 -29.41291 -28.10922 -26.79995 -25.24180 -22.09826 -21.80436 -19.82926 -18.83577 -17.39077 -16.46368 -15.44116 -15.15535 -14.65066 -14.49004 -13.95546 -13.76559 -13.26519 -12.98934 -12.90915 -12.67830 -12.40063 -11.76001 -11.74223 -11.51862 -11.48865 -11.07619 -10.94949 -10.72751 -10.69834 -10.31351 -10.22588 -9.08995 -9.05817 -8.56445 -8.49086 -8.27903 -7.89540 -6.11809 -4.21263 0.73142 1.63085 2.04072 2.55513 3.26580 3.31577 3.32982 3.85742 4.07638 4.39250 4.70668 5.07335 5.20415 5.32037 5.33057 5.42117 5.51917 5.71631 5.78738 5.94926 6.08855 6.19556 6.52470 6.72221 6.84478 6.97513 7.14781 7.43245 7.55232 7.69127 7.91125 8.14402 8.62396 8.76707 9.06344 9.45895 10.94207 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.031555 B = 0.005503 C = 0.004876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.128451 B = 5086.950539 C = 5741.577987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.208 4.208 3 C -0.152 4.152 4 C -0.033 4.033 5 C -0.102 4.102 6 C -0.255 4.255 7 C 0.575 3.425 8 O -0.540 6.540 9 N -0.703 5.703 10 C 0.265 3.735 11 H 0.051 0.949 12 C -0.147 4.147 13 C -0.535 4.535 14 H 0.061 0.939 15 C 0.067 3.933 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.276 1.276 21 S 0.191 5.809 22 H 0.067 0.933 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.139 0.861 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.385 0.615 30 H 0.015 0.985 31 H 0.026 0.974 32 H 0.091 0.909 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.490 7.622 -1.097 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.328 4.328 3 C -0.184 4.184 4 C -0.048 4.048 5 C -0.161 4.161 6 C -0.376 4.376 7 C 0.359 3.641 8 O -0.420 6.420 9 N -0.350 5.350 10 C 0.164 3.836 11 H 0.069 0.931 12 C -0.206 4.206 13 C -0.574 4.574 14 H 0.079 0.921 15 C -0.136 4.136 16 N -0.521 5.521 17 Si 0.730 3.270 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.202 1.202 21 S 0.460 5.540 22 H 0.086 0.914 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.156 0.844 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.218 0.782 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.886 6.488 -1.112 16.277 hybrid contribution -0.174 0.301 0.344 0.489 sum -15.060 6.790 -0.768 16.538 Atomic orbital electron populations 1.20324 0.87767 1.02878 1.02936 1.24104 1.01182 0.98159 1.09334 1.19761 0.92274 0.99318 1.06996 1.19435 0.94517 0.93587 0.97229 1.20692 0.98233 0.94343 1.02787 1.24788 0.97554 0.97249 1.17987 1.16974 0.85979 0.83385 0.77713 1.90723 1.41635 1.57889 1.51780 1.46476 1.11770 1.04744 1.72026 1.18792 0.76779 0.93870 0.94160 0.93091 1.22084 1.03803 0.97442 0.97248 1.21169 0.94527 1.00015 1.41655 0.92129 1.24873 0.95207 0.98397 0.95114 1.69888 0.98640 1.37767 1.45758 0.86495 0.77181 0.83666 0.79685 1.20128 1.21094 1.20151 1.83021 0.94663 1.07543 1.68809 0.91439 0.90595 0.90610 0.84366 0.91052 0.92238 0.88630 0.78215 0.96545 0.95434 0.89013 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.33 36.00 0.37 -0.30 16 2 C -0.21 -2.50 6.28 -35.86 -0.23 -2.72 16 3 C -0.15 -1.94 9.82 -41.41 -0.41 -2.35 16 4 C -0.03 -0.52 5.90 -105.48 -0.62 -1.14 16 5 C -0.10 -1.50 9.55 36.01 0.34 -1.16 16 6 C -0.26 -4.48 6.45 -36.79 -0.24 -4.72 16 7 C 0.57 12.42 7.74 -12.90 -0.10 12.32 16 8 O -0.54 -13.16 13.91 5.18 0.07 -13.09 16 9 N -0.70 -15.59 5.06 -56.27 -0.28 -15.88 16 10 C 0.27 6.92 2.56 -69.08 -0.18 6.74 16 11 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 12 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 13 C -0.54 -14.40 8.73 -34.44 -0.30 -14.71 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 15 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 16 N -0.88 -24.98 11.32 55.43 0.63 -24.35 16 17 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 S 0.19 2.63 22.08 -107.50 -2.37 0.26 16 22 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.10 1.67 6.02 -51.93 -0.31 1.36 16 29 H 0.39 7.62 7.65 -40.82 -0.31 7.31 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -30.26 293.54 -7.92 -38.17 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -4.25 Total: 4.44 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -1.10 Total: -9.69 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.34 Total: -40.23 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.07 Total: -13.09 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.37 Total: 0.26 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.26 -7.92 -38.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601023094.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.615 kcal (2) G-P(sol) polarization free energy of solvation -30.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds