Wall clock time and date at job start Sun Mar 29 2020 23:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32772 * 124.70906 * 2 1 4 4 C 1.44430 * 113.07845 * 179.97438 * 3 2 1 5 5 C 1.47196 * 123.45682 * 180.02562 * 4 3 2 6 6 O 1.21633 * 119.99645 * 180.02562 * 5 4 3 7 7 N 1.34773 * 119.99994 * 359.75217 * 5 4 3 8 8 C 1.46506 * 119.99968 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.46738 * 324.99609 * 8 7 5 10 10 C 1.52993 * 109.47171 * 84.99494 * 8 7 5 11 11 C 1.50696 * 109.47107 * 204.99709 * 8 7 5 12 12 H 1.08004 * 119.99772 * 0.02562 * 11 8 7 13 13 C 1.37874 * 120.00035 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99837 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 120.00153 * 180.02562 * 13 11 8 16 16 H 1.48499 * 109.47347 * 89.99856 * 15 13 11 17 17 H 1.48499 * 109.47052 * 210.00137 * 15 13 11 18 18 H 1.48504 * 109.46892 * 330.00071 * 15 13 11 19 19 C 1.36004 * 113.08165 * 0.26906 * 4 3 2 20 20 C 1.50705 * 124.59201 * 179.71014 * 19 4 3 21 21 S 1.70450 * 110.81607 * 359.59047 * 19 4 3 22 22 H 1.09000 * 109.47347 * 89.99737 * 1 2 3 23 23 H 1.09005 * 109.47227 * 210.00110 * 1 2 3 24 24 H 1.09009 * 109.47282 * 329.99646 * 1 2 3 25 25 H 1.07994 * 123.46070 * 359.96726 * 3 2 1 26 26 H 0.96998 * 120.00525 * 359.97438 * 7 5 4 27 27 H 1.08999 * 109.47547 * 300.00481 * 10 8 7 28 28 H 1.09000 * 109.47196 * 60.00395 * 10 8 7 29 29 H 1.09002 * 109.46922 * 180.02562 * 10 8 7 30 30 H 0.97002 * 119.99944 * 179.97438 * 14 13 11 31 31 H 1.08998 * 109.46752 * 90.00296 * 20 19 4 32 32 H 1.09004 * 109.46613 * 209.99966 * 20 19 4 33 33 H 1.08994 * 109.46645 * 329.99676 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0915 0.0000 4 6 3.6776 0.8003 0.0006 5 6 4.7200 1.8395 0.0013 6 8 5.8944 1.5229 0.0013 7 7 4.3732 3.1419 -0.0037 8 6 5.4108 4.1762 -0.0036 9 1 6.2605 3.8383 0.5895 10 6 5.8652 4.4429 -1.4399 11 6 4.8555 5.4446 0.5913 12 1 3.8322 5.4768 0.9353 13 6 5.6541 6.5635 0.6973 14 7 6.9005 6.5237 0.2798 15 14 4.9661 8.1356 1.4354 16 1 5.1974 8.1364 2.9022 17 1 5.6457 9.3071 0.8264 18 1 3.5080 8.2129 1.1642 19 6 3.9476 -0.5327 -0.0048 20 6 5.3334 -1.1249 -0.0119 21 16 2.5064 -1.4427 0.0007 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5139 25 1 1.8614 2.0940 -0.0005 26 1 3.4367 3.3944 -0.0081 27 1 6.2667 3.5255 -1.8703 28 1 5.0154 4.7808 -2.0331 29 1 6.6374 5.2121 -1.4398 30 1 7.4623 7.3110 0.3541 31 1 5.6712 -1.2711 1.0141 32 1 5.3158 -2.0844 -0.5289 33 1 6.0153 -0.4476 -0.5260 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000604573832.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:20:22 Heat of formation + Delta-G solvation = -43.572500 kcal Electronic energy + Delta-G solvation = -16250.283969 eV Core-core repulsion = 13594.148239 eV Total energy + Delta-G solvation = -2656.135730 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87384 -38.18321 -36.73697 -34.39854 -33.84912 -31.30866 -29.88004 -27.36990 -26.33393 -24.83155 -22.60653 -21.55347 -20.23944 -18.62596 -18.07307 -17.30053 -16.83028 -16.14517 -16.00439 -15.13716 -14.82186 -14.59550 -14.45227 -14.16402 -14.10234 -13.81054 -13.67730 -12.99143 -12.90126 -12.84759 -12.75646 -12.54072 -12.43177 -12.28177 -12.12704 -11.84113 -11.13482 -10.69544 -10.54506 -9.84956 -9.52467 -9.26926 -8.18609 -6.36505 -0.17817 0.54174 0.92257 1.03648 1.44486 1.45341 1.56216 2.35939 2.46845 2.71422 3.11858 3.71176 3.91320 4.18390 4.27888 4.56873 4.64369 4.67129 4.72736 4.82442 4.89544 4.93106 5.06662 5.10312 5.20587 5.26782 5.43127 5.44320 5.60352 5.67238 5.89742 6.07642 6.70311 6.94606 7.30302 7.51556 8.88034 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.030658 B = 0.005339 C = 0.004728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.091352 B = 5242.788497 C = 5920.925824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.198 4.198 3 C -0.126 4.126 4 C -0.189 4.189 5 C 0.557 3.443 6 O -0.591 6.591 7 N -0.698 5.698 8 C 0.271 3.729 9 H -0.001 1.001 10 C -0.132 4.132 11 C -0.548 4.548 12 H 0.072 0.928 13 C 0.015 3.985 14 N -0.917 5.917 15 Si 0.975 3.025 16 H -0.278 1.278 17 H -0.282 1.282 18 H -0.259 1.259 19 C -0.167 4.167 20 C -0.092 4.092 21 S 0.228 5.772 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.156 0.844 26 H 0.402 0.598 27 H 0.010 0.990 28 H 0.039 0.961 29 H 0.069 0.931 30 H 0.266 0.734 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.326 -14.240 -0.952 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.315 4.315 3 C -0.154 4.154 4 C -0.206 4.206 5 C 0.345 3.655 6 O -0.475 6.475 7 N -0.347 5.347 8 C 0.168 3.832 9 H 0.017 0.983 10 C -0.191 4.191 11 C -0.586 4.586 12 H 0.090 0.910 13 C -0.185 4.185 14 N -0.556 5.556 15 Si 0.799 3.201 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.183 1.183 19 C -0.288 4.288 20 C -0.150 4.150 21 S 0.494 5.506 22 H 0.107 0.893 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.174 0.826 26 H 0.237 0.763 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.671 -15.842 -0.969 20.948 hybrid contribution 0.494 2.742 0.313 2.803 sum -13.177 -13.100 -0.656 18.592 Atomic orbital electron populations 1.20480 0.84866 1.04491 1.04057 1.24704 1.01925 0.95514 1.09343 1.21203 0.89883 1.00756 1.03606 1.20255 0.94105 0.92974 1.13265 1.18226 0.88039 0.83144 0.76120 1.90645 1.20820 1.82484 1.53577 1.46163 1.11065 1.05178 1.72254 1.18376 0.86408 0.85102 0.93343 0.98316 1.21888 1.00856 0.98957 0.97391 1.21520 0.99240 0.96036 1.41820 0.90956 1.25820 0.94952 1.02398 0.95374 1.70055 1.07718 1.30924 1.46863 0.85306 0.78921 0.77752 0.78123 1.20340 1.20784 1.18319 1.24723 1.03484 0.96929 1.03629 1.20561 0.90012 1.01001 1.03418 1.82477 0.90855 1.07148 1.70081 0.89349 0.89657 0.89530 0.82648 0.76272 0.97048 0.94144 0.91271 0.92476 0.90409 0.88967 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.34 71.23 0.74 -0.31 16 2 C -0.20 -4.19 6.44 24.51 0.16 -4.03 16 3 C -0.13 -3.43 9.75 22.67 0.22 -3.21 16 4 C -0.19 -6.59 5.98 -19.87 -0.12 -6.71 16 5 C 0.56 24.91 7.75 86.60 0.67 25.59 16 6 O -0.59 -30.63 13.73 -4.13 -0.06 -30.68 16 7 N -0.70 -31.53 5.05 -449.60 -2.27 -33.80 16 8 C 0.27 14.70 2.56 44.24 0.11 14.82 16 9 H 0.00 -0.07 7.58 -2.39 -0.02 -0.09 16 10 C -0.13 -6.97 9.26 71.98 0.67 -6.31 16 11 C -0.55 -29.81 8.73 25.60 0.22 -29.58 16 12 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 13 C 0.01 0.80 5.30 84.65 0.45 1.25 16 14 N -0.92 -53.43 11.32 21.45 0.24 -53.19 16 15 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 16 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 C -0.17 -5.03 6.34 25.17 0.16 -4.87 16 20 C -0.09 -2.68 9.60 71.24 0.68 -2.00 16 21 S 0.23 4.71 22.94 -56.49 -1.30 3.41 16 22 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 23 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 24 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.16 3.78 7.10 -2.91 -0.02 3.76 16 26 H 0.40 15.53 7.08 -92.71 -0.66 14.87 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 30 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 32 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.07 2.66 5.95 -2.39 -0.01 2.65 16 Total: -1.00 -68.75 292.78 3.08 -65.68 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.47 Total: 19.48 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 3.96 Total: -15.36 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -2.03 Total: -86.99 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.06 Total: -30.68 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.30 Total: 3.41 kcal Total: -68.75 3.08 -65.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604573832.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.103 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds