Wall clock time and date at job start Sun Mar 29 2020 23:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47518 * 312.64962 * 3 2 1 5 5 C 1.46495 * 120.00628 * 270.00497 * 4 3 2 6 6 C 1.53004 * 109.46986 * 270.00225 * 5 4 3 7 7 C 1.52997 * 117.49514 * 243.61460 * 6 5 4 8 8 C 1.52997 * 60.00268 * 252.51458 * 7 6 5 9 9 C 1.34774 * 119.99544 * 90.00335 * 4 3 2 10 10 O 1.21279 * 120.00472 * 0.02562 * 9 4 3 11 11 C 1.50706 * 120.00020 * 180.02562 * 9 4 3 12 12 S 1.81002 * 109.47200 * 179.97438 * 11 9 4 13 13 C 1.76198 * 99.99878 * 179.97438 * 12 11 9 14 14 H 1.08006 * 120.00031 * 359.97438 * 13 12 11 15 15 C 1.38801 * 120.00096 * 180.02562 * 13 12 11 16 16 N 1.31631 * 119.99737 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99933 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47767 * 59.99657 * 17 15 13 19 19 H 1.48505 * 109.46944 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46958 * 299.99344 * 17 15 13 21 21 H 4.40635 * 5.51400 * 179.97438 * 4 1 2 22 22 H 1.09008 * 109.46387 * 192.65202 * 3 2 1 23 23 H 1.09003 * 109.47247 * 72.66083 * 3 2 1 24 24 H 1.09004 * 109.46971 * 29.99775 * 5 4 3 25 25 H 1.08993 * 109.47768 * 149.99839 * 5 4 3 26 26 H 1.09000 * 115.55217 * 29.32861 * 6 5 4 27 27 H 1.09003 * 117.50408 * 0.02562 * 7 6 5 28 28 H 1.09009 * 117.49806 * 145.01909 * 7 6 5 29 29 H 1.09001 * 117.49351 * 252.51715 * 8 7 6 30 30 H 1.08988 * 117.50123 * 107.49613 * 8 7 6 31 31 H 1.09001 * 109.46953 * 299.99667 * 11 9 4 32 32 H 1.09000 * 109.47318 * 59.99264 * 11 9 4 33 33 H 0.97001 * 119.99701 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -0.9349 1.0158 5 6 3.3788 -0.4697 2.3834 6 6 4.8236 0.0189 2.5058 7 6 5.7474 -0.7400 3.4605 8 6 5.2438 0.6562 3.8318 9 6 3.3602 -2.2236 0.6922 10 8 3.1587 -2.6088 -0.4400 11 6 3.8625 -3.1863 1.7373 12 16 4.0639 -4.8268 0.9995 13 6 4.6438 -5.7234 2.4010 14 1 4.7706 -5.2212 3.3488 15 6 4.9388 -7.0749 2.2869 16 7 4.7848 -7.6868 1.1316 17 14 5.5530 -8.0256 3.7729 18 1 4.5339 -7.9708 4.8516 19 1 5.7930 -9.4405 3.3907 20 1 6.8201 -7.4217 4.2578 21 1 -1.0497 -0.0001 0.0004 22 1 3.0088 1.0036 0.2251 23 1 3.0096 -0.3055 -0.9810 24 1 2.6976 0.3490 2.6156 25 1 3.2123 -1.2900 3.0814 26 1 5.2630 0.4206 1.5927 27 1 5.3260 -1.5876 4.0011 28 1 6.7950 -0.8380 3.1755 29 1 5.9601 1.4768 3.7910 30 1 4.4912 0.7274 4.6168 31 1 4.8224 -2.8391 2.1196 32 1 3.1443 -3.2418 2.5554 33 1 4.9906 -8.6314 1.0519 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700627380.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:43 Heat of formation + Delta-G solvation = 45.200329 kcal Electronic energy + Delta-G solvation = -15987.996375 eV Core-core repulsion = 13335.710124 eV Total energy + Delta-G solvation = -2652.286251 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 253.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.71994 -37.44451 -35.27993 -32.89230 -32.41707 -29.76130 -27.74534 -25.87991 -25.32301 -22.42772 -21.06176 -19.71918 -18.06565 -17.73142 -16.67461 -16.18487 -15.59336 -14.98518 -14.79508 -14.06709 -13.96463 -13.86830 -13.37740 -13.09171 -12.62420 -12.41854 -12.04575 -11.70413 -11.54761 -11.03708 -11.03394 -10.79492 -10.69194 -10.44438 -10.16055 -10.09286 -9.79820 -9.33479 -9.04796 -8.73972 -8.21220 -6.48549 -6.20283 -3.90769 2.43580 2.85710 3.02260 3.17550 3.23902 3.28709 3.35742 3.60937 3.79113 4.21434 4.39948 4.60890 4.78869 4.81122 5.01577 5.14713 5.17960 5.30839 5.36955 5.48021 5.54887 5.61405 5.71519 5.87734 5.90918 5.96798 6.04901 6.11690 6.18566 6.57044 7.48605 7.60188 7.62058 8.36033 8.53423 9.24750 10.87161 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.020936 B = 0.006051 C = 0.004976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.119052 B = 4626.443219 C = 5625.448080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.223 3.777 4 N -0.615 5.615 5 C 0.142 3.858 6 C -0.175 4.175 7 C -0.176 4.176 8 C -0.176 4.176 9 C 0.537 3.463 10 O -0.511 6.511 11 C -0.150 4.150 12 S -0.062 6.062 13 C -0.534 4.534 14 H 0.072 0.928 15 C 0.074 3.926 16 N -0.868 5.868 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.274 1.274 21 H 0.216 0.784 22 H 0.098 0.902 23 H 0.107 0.893 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 17.820 4.316 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.200 4.200 3 C 0.101 3.899 4 N -0.350 5.350 5 C 0.019 3.981 6 C -0.194 4.194 7 C -0.213 4.213 8 C -0.214 4.214 9 C 0.325 3.675 10 O -0.384 6.384 11 C -0.300 4.300 12 S 0.164 5.836 13 C -0.682 4.682 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.744 3.256 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.199 1.199 21 H 0.233 0.767 22 H 0.116 0.884 23 H 0.125 0.875 24 H 0.099 0.901 25 H 0.103 0.897 26 H 0.126 0.874 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.495 17.049 2.520 17.414 hybrid contribution 0.423 -0.131 2.328 2.370 sum -2.072 16.918 4.848 17.720 Atomic orbital electron populations 1.24912 0.95925 1.00364 1.00203 1.23699 0.95095 1.00530 1.00694 1.18237 0.83450 0.93815 0.94389 1.47952 1.67116 1.09286 1.10653 1.21156 0.93752 1.00084 0.83145 1.22814 0.96491 1.05132 0.94968 1.23108 1.00024 0.95200 1.02935 1.22928 1.03692 0.96775 0.97960 1.20413 0.76214 0.81463 0.89407 1.90701 1.49913 1.76262 1.21569 1.23590 1.03749 1.01947 1.00724 1.85401 1.86382 0.95399 1.16375 1.22804 1.51422 0.96958 0.97046 0.91026 1.24982 0.95119 0.96596 0.96833 1.70012 1.45542 1.11074 1.23682 0.86239 0.79240 0.78526 0.81574 1.19964 1.20816 1.19925 0.76732 0.88416 0.87523 0.90116 0.89692 0.87406 0.88220 0.88589 0.88848 0.88745 0.88687 0.89506 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.41 19.25 29.55 0.57 -1.84 16 2 C -0.20 -2.71 13.68 -37.12 -0.51 -3.22 16 3 C 0.22 2.82 5.88 -6.83 -0.04 2.78 16 4 N -0.62 -8.93 2.43 -177.03 -0.43 -9.36 16 5 C 0.14 1.61 5.49 -4.04 -0.02 1.59 16 6 C -0.17 -1.82 5.95 -90.62 -0.54 -2.36 16 7 C -0.18 -1.92 9.18 -26.73 -0.25 -2.17 16 8 C -0.18 -1.54 10.25 -26.73 -0.27 -1.81 16 9 C 0.54 10.45 7.69 -10.98 -0.08 10.37 16 10 O -0.51 -11.93 15.44 5.56 0.09 -11.84 16 11 C -0.15 -3.09 4.71 36.01 0.17 -2.92 16 12 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 13 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 14 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 15 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 16 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 17 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 21 H 0.22 1.86 7.80 -54.10 -0.42 1.44 16 22 H 0.10 0.88 8.07 -51.92 -0.42 0.46 16 23 H 0.11 1.46 7.42 -51.93 -0.39 1.07 16 24 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 25 H 0.08 1.01 6.17 -51.93 -0.32 0.69 16 26 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.10 1.17 7.87 -51.93 -0.41 0.76 16 28 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.74 8.14 -51.94 -0.42 0.32 16 31 H 0.09 1.81 6.84 -51.92 -0.36 1.46 16 32 H 0.09 1.68 7.40 -51.92 -0.38 1.30 16 33 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 307.95 15.07 4.64 4.64 Total: -1.00 -34.29 307.95 -7.33 -41.62 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.35 Total: 0.49 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -0.78 Total: -12.47 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 0.30 Total: -34.88 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.29 -7.33 -41.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700627380.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.822 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds