Wall clock time and date at job start Sun Mar 29 2020 23:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35355 * 126.37565 * 2 1 4 4 C 1.41550 * 105.49796 * 180.02562 * 3 2 1 5 5 C 1.47584 * 126.51899 * 180.02562 * 4 3 2 6 6 O 1.21487 * 120.00160 * 359.97438 * 5 4 3 7 7 O 1.34733 * 119.99487 * 179.97438 * 5 4 3 8 8 C 1.45206 * 116.99551 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46831 * 179.97438 * 8 7 5 10 10 O 1.21291 * 120.00209 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99938 * 179.97438 * 9 8 7 12 12 C 1.37100 * 119.99891 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00067 * 359.97438 * 12 11 9 14 14 C 1.38953 * 119.99581 * 179.97438 * 12 11 9 15 15 N 1.31408 * 120.00395 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99515 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47395 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47196 * 120.00383 * 16 14 12 19 19 H 1.48502 * 109.47155 * 239.99825 * 16 14 12 20 20 N 1.31854 * 106.95147 * 359.97438 * 4 3 2 21 21 N 1.28461 * 110.06484 * 0.02562 * 20 4 3 22 22 H 0.96999 * 124.87878 * 180.02562 * 21 20 4 23 23 H 1.09001 * 109.47349 * 90.00569 * 1 2 3 24 24 H 1.08997 * 109.47373 * 210.00161 * 1 2 3 25 25 H 1.08999 * 109.47622 * 330.00422 * 1 2 3 26 26 H 1.08000 * 127.24774 * 359.73291 * 3 2 1 27 27 H 1.08997 * 109.46640 * 299.99394 * 8 7 5 28 28 H 1.08993 * 109.47453 * 59.99545 * 8 7 5 29 29 H 0.97000 * 119.99607 * 0.02562 * 11 9 8 30 30 H 0.96995 * 119.99821 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0898 0.0000 4 6 3.6323 0.5854 -0.0006 5 6 4.8756 1.3806 -0.0003 6 8 4.8204 2.5942 0.0001 7 8 6.0717 0.7605 -0.0005 8 6 7.2523 1.6058 0.0004 9 6 8.4879 0.7430 0.0008 10 8 8.3837 -0.4655 0.0008 11 7 9.7086 1.3141 0.0010 12 6 10.8327 0.5291 0.0019 13 1 10.7399 -0.5469 0.0027 14 6 12.0912 1.1180 0.0016 15 7 12.2042 2.4272 0.0011 16 14 13.6227 0.0484 0.0035 17 1 13.2270 -1.3829 0.0057 18 1 14.4299 0.3375 -1.2090 19 1 14.4290 0.3404 1.2159 20 7 3.5420 -0.7301 -0.0004 21 7 2.3080 -1.0872 -0.0002 22 1 1.9964 -2.0057 0.0003 23 1 -0.3634 -0.0001 -1.0277 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3634 0.8900 0.5137 26 1 2.0052 2.1260 -0.0040 27 1 7.2488 2.2356 -0.8892 28 1 7.2484 2.2345 0.8907 29 1 9.7919 2.2805 0.0014 30 1 13.0827 2.8382 0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731242907.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:49 Heat of formation + Delta-G solvation = -74.330832 kcal Electronic energy + Delta-G solvation = -17446.481215 eV Core-core repulsion = 14242.718490 eV Total energy + Delta-G solvation = -3203.762725 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.80013 -41.45469 -40.00073 -37.53637 -36.04636 -33.79764 -33.43014 -33.07241 -30.17795 -27.96914 -26.87070 -25.49076 -22.33478 -21.60143 -21.42100 -20.08815 -18.94686 -18.38706 -17.85089 -17.82331 -17.23000 -16.71127 -16.46493 -15.78598 -15.62439 -14.86129 -14.76460 -14.12038 -14.01686 -13.70452 -13.66417 -13.57230 -13.09162 -12.94771 -12.47593 -12.11599 -12.05335 -11.90967 -11.88359 -11.59590 -10.61219 -10.53265 -10.12581 -10.00850 -8.53040 -6.03756 0.14164 1.02190 1.20108 1.34147 1.43074 1.58057 1.84938 1.97517 2.00887 2.30459 2.98936 3.12161 3.35699 3.73133 3.88393 4.08023 4.14065 4.20959 4.38959 4.48674 4.84257 5.00539 5.09539 5.16471 5.30241 5.36550 5.87865 6.04512 6.41664 6.51396 6.81557 7.02192 7.38486 7.92799 8.64390 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.063074 B = 0.003613 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.816335 B = 7747.985157 C = 8171.356504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.038 3.962 3 C -0.189 4.189 4 C -0.028 4.028 5 C 0.549 3.451 6 O -0.517 6.517 7 O -0.335 6.335 8 C 0.069 3.931 9 C 0.436 3.564 10 O -0.618 6.618 11 N -0.556 5.556 12 C -0.339 4.339 13 H 0.083 0.917 14 C -0.009 4.009 15 N -0.915 5.915 16 Si 0.999 3.001 17 H -0.272 1.272 18 H -0.268 1.268 19 H -0.268 1.268 20 N -0.262 5.262 21 N -0.358 5.358 22 H 0.464 0.536 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.179 0.821 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.401 0.599 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.967 -1.766 0.000 23.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.216 4.216 4 C -0.185 4.185 5 C 0.393 3.607 6 O -0.404 6.404 7 O -0.249 6.249 8 C -0.008 4.008 9 C 0.223 3.777 10 O -0.505 6.505 11 N -0.194 5.194 12 C -0.468 4.468 13 H 0.101 0.899 14 C -0.209 4.209 15 N -0.555 5.555 16 Si 0.822 3.178 17 H -0.197 1.197 18 H -0.193 1.193 19 H -0.193 1.193 20 N -0.101 5.101 21 N -0.077 5.077 22 H 0.313 0.687 23 H 0.116 0.884 24 H 0.114 0.886 25 H 0.119 0.881 26 H 0.197 0.803 27 H 0.129 0.871 28 H 0.129 0.871 29 H 0.236 0.764 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -22.154 -2.968 0.000 22.351 hybrid contribution 0.661 0.536 -0.005 0.851 sum -21.492 -2.431 -0.005 21.629 Atomic orbital electron populations 1.20592 0.82318 1.05954 1.05133 1.22150 0.97401 0.85431 1.03868 1.21787 0.88292 1.01677 1.09864 1.20744 0.92471 0.90388 1.14893 1.20084 0.82849 0.85619 0.72161 1.90808 1.87862 1.14340 1.47409 1.86690 1.14284 1.40709 1.83230 1.22630 0.80817 0.91531 1.05793 1.20076 0.84825 0.88613 0.84187 1.90536 1.86936 1.16333 1.56695 1.41720 1.03811 1.09819 1.64032 1.19761 0.84242 0.92056 1.50696 0.89924 1.26141 1.01666 0.97525 0.95597 1.69675 1.26688 1.09968 1.49141 0.84785 0.76654 0.77823 0.78527 1.19678 1.19303 1.19314 1.73795 1.03344 1.14916 1.18036 1.43586 1.01857 1.11216 1.51084 0.68742 0.88424 0.88598 0.88065 0.80310 0.87074 0.87081 0.76447 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.44 71.23 0.74 0.41 16 2 C 0.04 0.55 7.23 41.40 0.30 0.85 16 3 C -0.19 -4.17 10.73 22.42 0.24 -3.93 16 4 C -0.03 -0.89 7.17 42.43 0.30 -0.59 16 5 C 0.55 20.51 7.97 70.29 0.56 21.07 16 6 O -0.52 -19.55 16.72 19.88 0.33 -19.22 16 7 O -0.34 -14.40 9.77 -50.05 -0.49 -14.89 16 8 C 0.07 2.85 5.95 71.24 0.42 3.27 16 9 C 0.44 22.64 7.86 87.66 0.69 23.33 16 10 O -0.62 -37.48 16.08 15.73 0.25 -37.23 16 11 N -0.56 -29.65 5.29 -306.98 -1.62 -31.27 16 12 C -0.34 -19.59 9.68 84.04 0.81 -18.78 16 13 H 0.08 5.09 7.16 -2.91 -0.02 5.07 16 14 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 15 N -0.91 -49.42 13.05 21.66 0.28 -49.14 16 16 Si 1.00 42.94 29.55 68.60 2.03 44.97 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 20 N -0.26 -7.80 12.24 -48.22 -0.59 -8.39 16 21 N -0.36 -6.36 6.83 -47.93 -0.33 -6.68 16 22 H 0.46 4.22 8.96 -220.00 -1.97 2.24 16 23 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 24 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 25 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.18 3.30 8.06 -2.91 -0.02 3.27 16 27 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 28 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 29 H 0.40 19.99 7.90 -92.71 -0.73 19.26 16 30 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -79.21 284.44 2.91 -76.30 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -1.50 Total: 19.90 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: 4.54 Total: 25.65 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -2.26 Total: -95.49 kcal Atomic # 8 Polarization: -71.44 SS G_CDS: 0.10 Total: -71.34 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -79.21 2.91 -76.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242907.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.971 kcal (2) G-P(sol) polarization free energy of solvation -79.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds