Wall clock time and date at job start Sun Mar 29 2020 23:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30430 * 125.99139 * 2 1 4 4 N 1.39932 * 108.91921 * 179.97438 * 3 2 1 5 5 H 0.97001 * 125.74094 * 179.97438 * 4 3 2 6 6 C 1.34221 * 108.51118 * 0.24752 * 4 3 2 7 7 C 1.38128 * 107.40944 * 359.61229 * 6 4 3 8 8 C 1.47287 * 126.42789 * 180.11428 * 7 6 4 9 9 O 1.21520 * 120.00283 * 180.32270 * 8 7 6 10 10 O 1.34758 * 119.99840 * 0.31642 * 8 7 6 11 11 C 1.45200 * 116.99846 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47014 * 180.02562 * 11 10 8 13 13 O 1.21298 * 120.00089 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00287 * 180.02562 * 12 11 10 15 15 C 1.37098 * 120.00472 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99700 * 0.02562 * 15 14 12 17 17 C 1.38948 * 120.00170 * 179.97438 * 15 14 12 18 18 N 1.31411 * 120.00135 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00207 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46498 * 60.00629 * 19 17 15 21 21 H 1.48495 * 109.47451 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47364 * 300.00699 * 19 17 15 23 23 H 1.08997 * 109.47164 * 90.02426 * 1 2 3 24 24 H 1.09002 * 109.46676 * 210.01960 * 1 2 3 25 25 H 1.08992 * 109.47147 * 330.02073 * 1 2 3 26 26 H 1.08003 * 126.29824 * 179.72433 * 6 4 3 27 27 H 1.08999 * 109.46764 * 300.00098 * 11 10 8 28 28 H 1.08992 * 109.47248 * 59.99986 * 11 10 8 29 29 H 0.97004 * 119.99509 * 359.97438 * 14 12 11 30 30 H 0.97001 * 120.00404 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6112 0.6445 0.0006 5 1 4.3839 1.2308 0.0004 6 6 3.6449 -0.6973 -0.0045 7 6 2.3377 -1.1435 0.0005 8 6 1.8929 -2.5476 0.0000 9 8 0.7061 -2.8091 -0.0011 10 8 2.8019 -3.5424 0.0005 11 6 2.2916 -4.9017 -0.0006 12 6 3.4452 -5.8714 0.0009 13 8 4.5854 -5.4575 0.0022 14 7 3.2101 -7.1985 -0.0004 15 6 4.2595 -8.0806 0.0004 16 1 5.2747 -7.7121 0.0025 17 6 4.0171 -9.4488 -0.0003 18 7 2.7818 -9.8972 -0.0024 19 14 5.4470 -10.6508 0.0000 20 1 6.2754 -10.4340 1.2133 21 1 4.9251 -12.0410 -0.0015 22 1 6.2773 -10.4329 -1.2117 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5135 26 1 4.5311 -1.3146 -0.0097 27 1 1.6818 -5.0616 0.8886 28 1 1.6838 -5.0609 -0.8913 29 1 2.2982 -7.5294 -0.0019 30 1 2.6126 -10.8524 -0.0033 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785576509.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:24:41 Heat of formation + Delta-G solvation = -76.798866 kcal Electronic energy + Delta-G solvation = -17638.984534 eV Core-core repulsion = 14435.114787 eV Total energy + Delta-G solvation = -3203.869747 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.52779 -41.12980 -39.88321 -37.34470 -35.99141 -34.05223 -33.38858 -31.91266 -29.84277 -28.96717 -26.62208 -24.59255 -22.16534 -21.36187 -20.81709 -20.03348 -19.38218 -18.33107 -17.63756 -17.63314 -16.94202 -16.28065 -16.17035 -15.72441 -15.41016 -15.30674 -14.62059 -14.03088 -13.83151 -13.74577 -13.57053 -13.52404 -13.01656 -12.90795 -12.46040 -12.17535 -12.11413 -11.77847 -11.53681 -11.47458 -10.60656 -10.46873 -10.09110 -10.03456 -8.49654 -6.00262 0.29108 0.91210 1.35090 1.39889 1.46232 1.56871 1.83773 1.90262 2.08801 2.32750 3.11550 3.16238 3.41684 3.70569 3.94905 4.16050 4.23003 4.26869 4.29380 4.47487 4.76963 4.86555 4.92961 5.29039 5.39079 5.48558 5.91871 6.15393 6.40912 6.49674 6.78076 7.05496 7.43319 7.96398 8.67176 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.051897 B = 0.003904 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.395669 B = 7170.264178 C = 7689.212755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.134 3.866 3 N -0.317 5.317 4 N -0.442 5.442 5 H 0.464 0.536 6 C 0.163 3.837 7 C -0.313 4.313 8 C 0.540 3.460 9 O -0.535 6.535 10 O -0.340 6.340 11 C 0.074 3.926 12 C 0.439 3.561 13 O -0.616 6.616 14 N -0.559 5.559 15 C -0.339 4.339 16 H 0.086 0.914 17 C -0.009 4.009 18 N -0.916 5.916 19 Si 0.998 3.002 20 H -0.270 1.270 21 H -0.271 1.271 22 H -0.270 1.270 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.222 0.778 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.400 0.600 30 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 16.595 -0.033 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.034 4.034 3 N -0.140 5.140 4 N -0.147 5.147 5 H 0.314 0.686 6 C 0.007 3.993 7 C -0.326 4.326 8 C 0.386 3.614 9 O -0.426 6.426 10 O -0.255 6.255 11 C -0.003 4.003 12 C 0.225 3.775 13 O -0.503 6.503 14 N -0.196 5.196 15 C -0.468 4.468 16 H 0.104 0.896 17 C -0.209 4.209 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.195 1.195 22 H -0.195 1.195 23 H 0.109 0.891 24 H 0.102 0.898 25 H 0.110 0.890 26 H 0.238 0.762 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.234 0.766 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.424 17.862 -0.029 17.918 hybrid contribution 0.404 -1.647 -0.013 1.696 sum -1.019 16.214 -0.041 16.246 Atomic orbital electron populations 1.20425 0.84518 1.04469 1.04402 1.22780 0.98345 0.88013 0.94293 1.77135 0.87312 1.22108 1.27418 1.46159 1.07802 1.05582 1.55166 0.68643 1.23791 0.99409 0.85596 0.90476 1.19441 0.94399 0.90036 1.28744 1.20386 0.83589 0.85479 0.71901 1.90768 1.18250 1.84929 1.48634 1.86563 1.39483 1.15302 1.84183 1.22478 0.94512 0.77993 1.05323 1.20093 0.90021 0.83396 0.83958 1.90507 1.24595 1.78458 1.56751 1.41739 1.09942 1.03829 1.64107 1.19701 0.88985 0.87396 1.50681 0.89623 1.26116 1.00390 0.98737 0.95694 1.69669 1.20395 1.16338 1.49215 0.84922 0.77285 0.76606 0.79143 1.19455 1.19538 1.19464 0.89106 0.89832 0.88984 0.76178 0.87671 0.87659 0.76585 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 9.92 71.24 0.71 -0.92 16 2 C 0.13 3.27 7.27 43.53 0.32 3.58 16 3 N -0.32 -7.08 12.63 -46.65 -0.59 -7.67 16 4 N -0.44 -7.12 7.28 -56.28 -0.41 -7.53 16 5 H 0.46 3.58 8.96 -213.43 -1.91 1.67 16 6 C 0.16 3.17 11.86 84.30 1.00 4.17 16 7 C -0.31 -8.33 6.13 -20.16 -0.12 -8.45 16 8 C 0.54 17.54 7.95 70.20 0.56 18.10 16 9 O -0.53 -18.64 14.71 19.77 0.29 -18.35 16 10 O -0.34 -12.37 9.58 -50.30 -0.48 -12.85 16 11 C 0.07 2.77 5.95 71.24 0.42 3.19 16 12 C 0.44 21.04 7.86 87.66 0.69 21.73 16 13 O -0.62 -34.01 16.08 15.71 0.25 -33.75 16 14 N -0.56 -28.34 5.29 -306.98 -1.62 -29.96 16 15 C -0.34 -18.78 9.68 84.04 0.81 -17.97 16 16 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 17 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 18 N -0.92 -48.41 13.05 21.66 0.28 -48.13 16 19 Si 1.00 41.55 29.55 68.60 2.03 43.58 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 23 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 1.94 6.56 -2.39 -0.02 1.92 16 25 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.22 3.31 8.06 -2.91 -0.02 3.28 16 27 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 28 H 0.11 3.54 8.14 -2.39 -0.02 3.53 16 29 H 0.40 19.17 7.90 -92.71 -0.73 18.44 16 30 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -71.46 281.12 3.17 -68.29 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: -1.43 Total: 22.93 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 4.85 Total: 23.45 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -2.34 Total: -93.28 kcal Atomic # 8 Polarization: -65.02 SS G_CDS: 0.06 Total: -64.96 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -71.46 3.17 -68.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785576509.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.510 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds