Wall clock time and date at job start Sun Mar 29 2020 23:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00278 * 2 1 4 4 H 1.48500 * 109.47346 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46767 * 299.99965 * 3 2 1 6 6 H 1.48491 * 109.47078 * 59.99611 * 3 2 1 7 7 C 1.37879 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00305 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47516 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47295 * 179.97438 * 10 9 7 12 12 O 1.20828 * 119.99828 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00097 * 179.97438 * 11 10 9 14 14 C 1.45204 * 116.99877 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.46639 * 180.02562 * 14 13 11 16 16 C 1.38232 * 119.59260 * 359.97438 * 15 14 13 17 17 C 1.38596 * 119.18886 * 180.02562 * 16 15 14 18 18 C 1.38879 * 118.39652 * 0.25621 * 17 16 15 19 19 F 1.35106 * 120.44068 * 179.74732 * 18 17 16 20 20 C 1.38422 * 119.11596 * 359.51901 * 18 17 16 21 21 N 1.31848 * 119.58665 * 180.02562 * 15 14 13 22 22 H 0.97001 * 119.99922 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46944 * 59.99244 * 9 7 2 24 24 H 1.09002 * 109.46522 * 299.99625 * 9 7 2 25 25 H 1.09002 * 109.46955 * 59.99525 * 10 9 7 26 26 H 1.09001 * 109.46682 * 299.99795 * 10 9 7 27 27 H 1.08997 * 109.47152 * 60.00033 * 14 13 11 28 28 H 1.08998 * 109.46673 * 299.99425 * 14 13 11 29 29 H 1.08002 * 120.40687 * 0.02599 * 16 15 14 30 30 H 1.08002 * 120.79700 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.63454 * 180.20814 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2835 -4.9672 0.0011 13 8 2.1629 -6.1297 0.0008 14 6 1.3720 -7.3475 0.0008 15 6 2.2901 -8.5425 0.0010 16 6 3.6591 -8.3516 0.0005 17 6 4.4957 -9.4566 0.0001 18 6 3.9203 -10.7206 -0.0053 19 9 4.6969 -11.8262 -0.0110 20 6 2.5406 -10.8326 0.0002 21 7 1.7774 -9.7573 0.0005 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8719 -3.6044 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 0.7429 -7.3722 -0.8889 28 1 0.7436 -7.3724 0.8911 29 1 4.0719 -7.3536 0.0004 30 1 5.5691 -9.3375 -0.0008 31 1 2.0843 -11.8115 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614176.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:21 Heat of formation + Delta-G solvation = -126.122203 kcal Electronic energy + Delta-G solvation = -17152.620190 eV Core-core repulsion = 13926.691660 eV Total energy + Delta-G solvation = -3225.928529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.03645 -41.73958 -40.99729 -37.75918 -35.62961 -33.64767 -33.36364 -32.80198 -28.74018 -27.43222 -25.08345 -24.22870 -23.13487 -21.46507 -19.15779 -18.73427 -18.45346 -17.83447 -17.80390 -17.70432 -16.86488 -16.47378 -16.32535 -15.68143 -15.14760 -14.94535 -14.60555 -14.33994 -14.17782 -13.77633 -13.75579 -13.21096 -12.99384 -12.84891 -12.45915 -12.01513 -11.92613 -11.73011 -11.45369 -11.23905 -11.02944 -10.74783 -10.56835 -9.92622 -8.18288 -6.31563 -0.26580 0.01929 1.23301 1.41711 1.45975 1.48013 1.59799 2.43407 2.44295 2.90291 3.15650 3.16151 3.54596 3.73829 3.79552 3.96503 4.11303 4.14890 4.41718 4.50311 4.52943 4.68563 4.79236 4.87494 4.98115 5.34913 5.50045 5.50995 5.58624 5.83449 6.15122 6.63430 6.77131 6.88393 7.38868 8.94517 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.056828 B = 0.003249 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.592998 B = 8615.853706 C = 9082.693488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.973 3.027 4 H -0.252 1.252 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.035 3.965 10 C -0.091 4.091 11 C 0.471 3.529 12 O -0.541 6.541 13 O -0.347 6.347 14 C 0.117 3.883 15 C 0.102 3.898 16 C -0.122 4.122 17 C -0.098 4.098 18 C 0.042 3.958 19 F -0.129 7.129 20 C 0.079 3.921 21 N -0.475 5.475 22 H 0.263 0.737 23 H -0.010 1.010 24 H -0.010 1.010 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.168 0.832 30 H 0.179 0.821 31 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.547 -20.362 0.001 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.175 1.175 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.098 0.902 9 C -0.002 4.002 10 C -0.129 4.129 11 C 0.316 3.684 12 O -0.430 6.430 13 O -0.264 6.264 14 C 0.042 3.958 15 C -0.034 4.034 16 C -0.142 4.142 17 C -0.124 4.124 18 C 0.021 3.979 19 F -0.108 7.108 20 C -0.080 4.080 21 N -0.185 5.185 22 H 0.072 0.928 23 H 0.008 0.992 24 H 0.009 0.991 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.185 0.815 30 H 0.196 0.804 31 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 10.164 -20.415 0.000 22.805 hybrid contribution 0.499 0.658 -0.003 0.825 sum 10.662 -19.757 -0.003 22.451 Atomic orbital electron populations 1.70163 1.08237 1.27807 1.51439 1.26091 0.95701 1.03859 0.94662 0.85282 0.79412 0.78192 0.77423 1.17509 1.20820 1.20809 1.21688 0.94192 0.91210 1.50763 0.90222 1.18834 0.93810 0.92047 0.95541 1.21535 0.99258 0.85382 1.06682 1.24558 0.87190 0.86024 0.70663 1.90663 1.17583 1.88092 1.46679 1.86400 1.41203 1.14342 1.84445 1.21305 0.91334 0.78810 1.04300 1.20699 0.92884 0.91599 0.98239 1.22086 0.92619 1.01626 0.97824 1.22032 1.03382 0.89898 0.97123 1.18914 0.90341 0.83865 1.04796 1.91539 1.74471 1.50953 1.93837 1.23204 0.88764 0.98746 0.97322 1.67215 1.40684 0.98224 1.12414 0.92830 0.99153 0.99143 0.86140 0.86132 0.89188 0.89192 0.81469 0.80382 0.78912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.29 21.45 0.28 -57.22 16 2 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 3 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 4 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -29.27 9.11 25.60 0.23 -29.04 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.03 1.83 4.26 29.85 0.13 1.95 16 10 C -0.09 -3.39 5.75 29.85 0.17 -3.22 16 11 C 0.47 17.14 7.96 71.23 0.57 17.71 16 12 O -0.54 -24.24 15.73 21.96 0.35 -23.89 16 13 O -0.35 -9.83 8.66 -51.43 -0.45 -10.28 16 14 C 0.12 3.05 6.00 71.24 0.43 3.48 16 15 C 0.10 2.31 6.78 42.55 0.29 2.60 16 16 C -0.12 -2.20 9.41 22.35 0.21 -1.99 16 17 C -0.10 -1.43 10.16 22.51 0.23 -1.20 16 18 C 0.04 0.68 7.35 22.47 0.17 0.84 16 19 F -0.13 -2.06 17.28 44.97 0.78 -1.28 16 20 C 0.08 1.35 11.17 84.73 0.95 2.29 16 21 N -0.48 -10.63 10.27 -183.71 -1.89 -12.52 16 22 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 23 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 24 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 25 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 26 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 27 H 0.09 2.42 8.13 -2.39 -0.02 2.40 16 28 H 0.09 2.42 8.13 -2.39 -0.02 2.40 16 29 H 0.17 2.70 6.98 -2.91 -0.02 2.68 16 30 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -69.54 287.41 6.07 -63.47 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.14 Total: 3.22 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 3.83 Total: -6.42 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -1.60 Total: -69.73 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.10 Total: -34.17 kcal Atomic # 9 Polarization: -2.06 SS G_CDS: 0.78 Total: -1.28 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -69.54 6.07 -63.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614176.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.654 kcal (2) G-P(sol) polarization free energy of solvation -69.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds