Wall clock time and date at job start Sun Mar 29 2020 23:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99955 * 2 1 4 4 H 1.48506 * 109.46881 * 269.99630 * 3 2 1 5 5 H 1.48502 * 109.47209 * 29.99373 * 3 2 1 6 6 H 1.48493 * 109.47595 * 149.99657 * 3 2 1 7 7 C 1.38816 * 120.00385 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99815 * 135.28973 * 7 2 1 9 9 N 1.36934 * 120.00171 * 315.29288 * 7 2 1 10 10 C 1.46501 * 120.00199 * 194.29893 * 9 7 2 11 11 C 1.50703 * 109.46912 * 270.00178 * 10 9 7 12 12 O 1.20820 * 119.99967 * 359.97438 * 11 10 9 13 13 O 1.34234 * 119.99449 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99882 * 14.30061 * 9 7 2 15 15 C 1.50705 * 109.46975 * 276.60214 * 14 9 7 16 16 C 1.38220 * 120.01019 * 103.42563 * 15 14 9 17 17 C 1.38230 * 120.02329 * 179.72118 * 16 15 14 18 18 C 1.38267 * 120.04799 * 0.29710 * 17 16 15 19 19 C 1.38174 * 120.02960 * 0.02562 * 18 17 16 20 20 C 1.38438 * 120.01460 * 283.72249 * 15 14 9 21 21 F 1.35107 * 120.02241 * 0.02562 * 20 15 14 22 22 H 0.96992 * 120.00068 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46749 * 30.00131 * 10 9 7 24 24 H 1.08997 * 109.46588 * 150.00123 * 10 9 7 25 25 H 0.96693 * 116.99476 * 179.97438 * 13 11 10 26 26 H 1.08997 * 109.47467 * 156.59994 * 14 9 7 27 27 H 1.09004 * 109.46978 * 36.60025 * 14 9 7 28 28 H 1.07997 * 119.98859 * 0.02562 * 16 15 14 29 29 H 1.07987 * 119.97468 * 180.27748 * 17 16 15 30 30 H 1.08001 * 119.98748 * 179.97438 * 18 17 16 31 31 H 1.07997 * 120.01617 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4404 0.7001 7 6 2.0104 -1.2021 0.0005 8 1 2.8561 -1.3377 -0.6575 9 7 1.6229 -2.2162 0.8352 10 6 2.5173 -3.3520 1.0723 11 6 2.2451 -4.4271 0.0518 12 8 1.3914 -4.2617 -0.7869 13 8 2.9506 -5.5689 0.0756 14 6 0.3139 -2.1652 1.4912 15 6 0.4092 -1.3236 2.7377 16 6 -0.0899 -0.0347 2.7414 17 6 -0.0079 0.7355 3.8864 18 6 0.5789 0.2197 5.0272 19 6 1.0845 -1.0662 5.0238 20 6 1.0021 -1.8390 3.8776 21 9 1.4961 -3.0965 3.8731 22 1 -0.4850 0.8400 -0.0004 23 1 3.5529 -3.0231 0.9862 24 1 2.3438 -3.7483 2.0727 25 1 2.7399 -6.2290 -0.5988 26 1 0.0013 -3.1749 1.7575 27 1 -0.4163 -1.7262 0.8113 28 1 -0.5486 0.3692 1.8510 29 1 -0.4021 1.7408 3.8897 30 1 0.6429 0.8224 5.9211 31 1 1.5431 -1.4688 5.9148 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066500.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:35 Heat of formation + Delta-G solvation = -71.357532 kcal Electronic energy + Delta-G solvation = -19143.194171 eV Core-core repulsion = 15919.640416 eV Total energy + Delta-G solvation = -3223.553755 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.27033 -39.32755 -38.34973 -35.89110 -35.01011 -31.80126 -30.98405 -29.74554 -27.34714 -25.69095 -22.91278 -21.97679 -21.02734 -19.87244 -17.41989 -17.30545 -16.62786 -15.88771 -15.54173 -15.14459 -15.01309 -14.87692 -14.66970 -13.71831 -13.53379 -13.15729 -12.82680 -12.61990 -12.22330 -11.72983 -11.61065 -11.24283 -10.99669 -10.90470 -10.67919 -10.43578 -10.33804 -10.17914 -9.96414 -9.72899 -8.61223 -8.14557 -7.87154 -7.17035 -6.11684 -3.22694 1.85210 1.95645 3.10499 3.31205 3.43189 3.49645 3.83110 4.27625 4.43884 4.93509 4.98711 5.35665 5.40432 5.53225 5.71212 5.97215 6.08732 6.11801 6.18130 6.29522 6.44456 6.64598 6.78717 6.81496 7.16573 7.21520 7.32202 7.52355 7.66538 7.73244 8.12330 8.73383 8.92269 9.61321 10.05291 10.89264 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.016864 B = 0.011484 C = 0.007761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.958133 B = 2437.643019 C = 3606.916534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.030 3.970 3 Si 0.864 3.136 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.274 4.274 8 H 0.083 0.917 9 N -0.553 5.553 10 C 0.151 3.849 11 C 0.429 3.571 12 O -0.504 6.504 13 O -0.537 6.537 14 C 0.165 3.835 15 C -0.093 4.093 16 C -0.074 4.074 17 C -0.148 4.148 18 C -0.112 4.112 19 C -0.171 4.171 20 C 0.091 3.909 21 F -0.146 7.146 22 H 0.259 0.741 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.387 0.613 26 H 0.030 0.970 27 H 0.130 0.870 28 H 0.160 0.840 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -2.705 7.606 8.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.170 4.170 3 Si 0.691 3.309 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.204 1.204 7 C -0.400 4.400 8 H 0.101 0.899 9 N -0.270 5.270 10 C 0.020 3.980 11 C 0.267 3.733 12 O -0.389 6.389 13 O -0.348 6.348 14 C 0.040 3.960 15 C -0.096 4.096 16 C -0.092 4.092 17 C -0.167 4.167 18 C -0.130 4.130 19 C -0.190 4.190 20 C 0.071 3.929 21 F -0.125 7.125 22 H 0.070 0.930 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.244 0.756 26 H 0.048 0.952 27 H 0.147 0.853 28 H 0.177 0.823 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.960 -2.265 7.623 8.011 hybrid contribution 0.501 0.220 -0.465 0.718 sum 1.461 -2.045 7.158 7.587 Atomic orbital electron populations 1.70226 1.06083 1.26167 1.47498 1.24529 0.94530 0.97779 1.00173 0.86869 0.81417 0.84675 0.77934 1.21495 1.20973 1.20414 1.19073 1.12498 0.89443 1.19030 0.89894 1.44194 1.14599 1.18283 1.49910 1.20737 0.97233 0.85263 0.94782 1.26836 0.78263 0.81665 0.86539 1.90664 1.32130 1.78688 1.37425 1.84706 1.63576 1.29112 1.57447 1.20403 0.89674 0.94578 0.91388 1.20926 0.96525 0.96901 0.95247 1.22050 0.96188 0.92450 0.98538 1.21251 1.01683 1.00073 0.93669 1.20786 0.99264 0.94695 0.98301 1.20892 1.05117 0.95628 0.97349 1.17748 0.99626 0.80049 0.95455 1.91355 1.85733 1.38432 1.96994 0.92976 0.88925 0.88735 0.75619 0.95173 0.85286 0.82275 0.86694 0.86477 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.06 8.14 55.49 0.45 -21.61 16 2 C 0.03 0.77 3.98 -17.43 -0.07 0.70 16 3 Si 0.86 20.36 29.69 -169.99 -5.05 15.32 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.27 -7.23 9.53 -15.06 -0.14 -7.37 16 8 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 9 N -0.55 -13.35 2.02 -175.98 -0.36 -13.70 16 10 C 0.15 3.11 6.22 -5.19 -0.03 3.08 16 11 C 0.43 8.78 8.40 36.01 0.30 9.09 16 12 O -0.50 -12.33 17.19 -18.74 -0.32 -12.65 16 13 O -0.54 -8.71 13.42 -39.27 -0.53 -9.23 16 14 C 0.16 3.86 5.00 -5.19 -0.03 3.84 16 15 C -0.09 -1.99 5.17 -104.55 -0.54 -2.53 16 16 C -0.07 -1.53 8.47 -39.59 -0.34 -1.87 16 17 C -0.15 -2.63 10.05 -39.57 -0.40 -3.02 16 18 C -0.11 -1.80 10.04 -39.59 -0.40 -2.20 16 19 C -0.17 -2.90 10.03 -39.52 -0.40 -3.29 16 20 C 0.09 1.78 7.25 -39.42 -0.29 1.49 16 21 F -0.15 -2.80 14.41 2.25 0.03 -2.77 16 22 H 0.26 6.31 7.75 -40.82 -0.32 6.00 16 23 H 0.09 1.78 8.04 -51.93 -0.42 1.36 16 24 H 0.09 1.81 5.63 -51.93 -0.29 1.52 16 25 H 0.39 4.61 9.10 45.56 0.41 5.03 16 26 H 0.03 0.68 7.93 -51.93 -0.41 0.27 16 27 H 0.13 3.36 5.42 -51.93 -0.28 3.08 16 28 H 0.16 3.52 4.87 -52.49 -0.26 3.27 16 29 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 271.29 15.07 4.09 4.09 Total: -1.00 -29.55 271.29 -6.05 -35.60 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -2.05 Total: 7.04 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.32 Total: -2.08 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: 0.10 Total: -35.31 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.85 Total: -21.88 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.03 Total: -2.77 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.05 Total: 15.32 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.55 -6.05 -35.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066500.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.756 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds