Wall clock time and date at job start Sun Mar 29 2020 23:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99672 * 2 1 4 4 H 1.48506 * 109.47025 * 269.99520 * 3 2 1 5 5 H 1.48499 * 109.47600 * 29.99659 * 3 2 1 6 6 H 1.48504 * 109.47287 * 149.99868 * 3 2 1 7 7 C 1.38814 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99824 * 202.40417 * 7 2 1 9 9 N 1.36940 * 119.99653 * 22.40850 * 7 2 1 10 10 C 1.46494 * 120.00191 * 15.72901 * 9 7 2 11 11 C 1.50697 * 109.46985 * 264.28561 * 10 9 7 12 12 O 1.20823 * 120.00181 * 0.02562 * 11 10 9 13 13 O 1.34234 * 119.99866 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99635 * 196.00190 * 9 7 2 15 15 C 1.50702 * 109.47339 * 269.72833 * 14 9 7 16 16 C 1.38254 * 119.97017 * 269.72911 * 15 14 9 17 17 C 1.38194 * 120.01996 * 179.72517 * 16 15 14 18 18 C 1.38455 * 119.97946 * 0.56918 * 17 16 15 19 19 F 1.35094 * 120.02922 * 179.68359 * 18 17 16 20 20 C 1.38465 * 119.94555 * 359.69928 * 18 17 16 21 21 C 1.38192 * 119.97465 * 0.02562 * 20 18 17 22 22 H 0.96994 * 120.00633 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47438 * 24.28413 * 10 9 7 24 24 H 1.09004 * 109.47363 * 144.28274 * 10 9 7 25 25 H 0.96707 * 116.99845 * 180.02562 * 13 11 10 26 26 H 1.09000 * 109.47017 * 29.72617 * 14 9 7 27 27 H 1.08999 * 109.46932 * 149.72270 * 14 9 7 28 28 H 1.08000 * 119.98434 * 359.97291 * 16 15 14 29 29 H 1.08008 * 120.01054 * 180.24979 * 17 16 15 30 30 H 1.08006 * 120.01228 * 179.97438 * 20 18 17 31 31 H 1.08005 * 119.98797 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6528 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0291 -1.2372 0.3570 9 7 1.4031 -2.3435 -0.4511 10 6 0.1743 -2.2551 -1.2436 11 6 -1.0196 -2.4258 -0.3400 12 8 -0.8603 -2.6027 0.8445 13 8 -2.2600 -2.3814 -0.8512 14 6 1.9793 -3.6532 -0.1365 15 6 2.9491 -4.0488 -1.2200 16 6 2.5065 -4.7696 -2.3136 17 6 3.3939 -5.1280 -3.3105 18 6 4.7288 -4.7751 -3.2083 19 9 5.5983 -5.1305 -4.1792 20 6 5.1719 -4.0580 -2.1098 21 6 4.2817 -3.6957 -1.1168 22 1 -0.4851 0.8399 -0.0004 23 1 0.1251 -1.2810 -1.7304 24 1 0.1726 -3.0398 -2.0002 25 1 -2.9942 -2.4957 -0.2323 26 1 2.5029 -3.6000 0.8180 27 1 1.1829 -4.3947 -0.0732 28 1 1.4662 -5.0492 -2.3906 29 1 3.0472 -5.6877 -4.1668 30 1 6.2131 -3.7825 -2.0287 31 1 4.6272 -3.1367 -0.2598 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066508.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:04:38 Heat of formation + Delta-G solvation = -87.578621 kcal Electronic energy + Delta-G solvation = -18490.937292 eV Core-core repulsion = 15266.680137 eV Total energy + Delta-G solvation = -3224.257154 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.64143 -38.99385 -38.52606 -35.71239 -34.43677 -32.03740 -30.81514 -30.07822 -27.41385 -25.58632 -22.73059 -22.58983 -21.00337 -19.94287 -17.41228 -16.91880 -16.70066 -15.89079 -15.56439 -15.37089 -15.19925 -14.78551 -14.16619 -13.66117 -13.57154 -13.55565 -13.22957 -12.88084 -12.08781 -11.84138 -11.45210 -11.37578 -11.00310 -10.91538 -10.76192 -10.50215 -10.22443 -10.07526 -10.00864 -9.27197 -8.77496 -8.63566 -8.19463 -7.15431 -5.98562 -3.31763 1.50648 1.57381 3.32813 3.40093 3.41351 3.83333 3.90975 4.34937 4.50874 4.55245 5.02520 5.13359 5.19832 5.40521 5.46176 5.62894 5.66860 6.03123 6.28043 6.30048 6.38613 6.42404 6.52592 6.63332 6.89827 6.97297 7.03685 7.25008 7.63372 7.80834 8.10798 8.94705 9.37715 9.63612 10.05277 11.12542 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.019709 B = 0.007498 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.352759 B = 3733.527766 C = 4710.327639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.081 0.919 9 N -0.560 5.560 10 C 0.189 3.811 11 C 0.477 3.523 12 O -0.516 6.516 13 O -0.544 6.544 14 C 0.179 3.821 15 C -0.086 4.086 16 C -0.088 4.088 17 C -0.156 4.156 18 C 0.077 3.923 19 F -0.150 7.150 20 C -0.156 4.156 21 C -0.073 4.073 22 H 0.258 0.742 23 H 0.114 0.886 24 H 0.051 0.949 25 H 0.381 0.619 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.570 -8.166 -5.066 10.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.099 0.901 9 N -0.279 5.279 10 C 0.060 3.940 11 C 0.317 3.683 12 O -0.402 6.402 13 O -0.354 6.354 14 C 0.053 3.947 15 C -0.089 4.089 16 C -0.106 4.106 17 C -0.175 4.175 18 C 0.057 3.943 19 F -0.129 7.129 20 C -0.175 4.175 21 C -0.092 4.092 22 H 0.068 0.932 23 H 0.132 0.868 24 H 0.069 0.931 25 H 0.237 0.763 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.890 -8.010 -4.998 10.211 hybrid contribution -0.044 0.978 0.340 1.036 sum 3.846 -7.032 -4.658 9.270 Atomic orbital electron populations 1.69862 1.05294 1.26000 1.53614 1.24837 0.95238 0.98581 1.00952 0.86167 0.79039 0.83127 0.77724 1.21296 1.21865 1.20395 1.19260 0.95589 0.84802 1.38814 0.90123 1.43903 1.23273 1.01179 1.59503 1.20247 0.81166 1.02525 0.90070 1.25309 0.83123 0.69976 0.89935 1.90509 1.85824 1.45758 1.18114 1.84634 1.17824 1.86392 1.46557 1.19815 0.93575 0.87958 0.93388 1.21135 0.95240 0.94708 0.97840 1.20917 0.99171 0.97564 0.92985 1.21035 0.91868 1.03699 1.00919 1.17661 0.87610 1.01277 0.87702 1.91443 1.69269 1.90483 1.61722 1.21094 1.00888 1.01120 0.94362 1.20946 0.92602 0.97393 0.98238 0.93173 0.86795 0.93083 0.76350 0.91726 0.93089 0.85598 0.85505 0.85474 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.04 9.30 55.49 0.52 -24.52 16 2 C 0.00 0.05 4.86 -17.43 -0.08 -0.03 16 3 Si 0.91 21.13 29.61 -169.99 -5.03 16.10 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.26 -6.56 9.66 -15.06 -0.15 -6.71 16 8 H 0.08 2.00 7.92 -52.49 -0.42 1.59 16 9 N -0.56 -12.96 2.01 -175.99 -0.35 -13.32 16 10 C 0.19 4.25 5.49 -5.20 -0.03 4.22 16 11 C 0.48 11.13 6.54 36.00 0.24 11.36 16 12 O -0.52 -13.76 16.90 -18.75 -0.32 -14.08 16 13 O -0.54 -10.74 13.42 -39.27 -0.53 -11.27 16 14 C 0.18 3.46 5.76 -5.19 -0.03 3.43 16 15 C -0.09 -1.45 5.46 -104.61 -0.57 -2.02 16 16 C -0.09 -1.31 9.70 -39.59 -0.38 -1.70 16 17 C -0.16 -2.21 10.03 -39.52 -0.40 -2.61 16 18 C 0.08 1.15 7.30 -39.42 -0.29 0.86 16 19 F -0.15 -2.24 17.27 2.25 0.04 -2.20 16 20 C -0.16 -2.29 10.03 -39.51 -0.40 -2.68 16 21 C -0.07 -1.16 9.70 -39.60 -0.38 -1.54 16 22 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 23 H 0.11 2.80 6.34 -51.93 -0.33 2.48 16 24 H 0.05 0.98 8.12 -51.93 -0.42 0.55 16 25 H 0.38 5.96 9.10 45.56 0.41 6.38 16 26 H 0.06 1.26 7.98 -51.93 -0.41 0.84 16 27 H 0.05 0.94 8.01 -51.93 -0.42 0.53 16 28 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 29 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 30 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.13 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 282.38 15.07 4.26 4.26 Total: -1.00 -30.73 282.38 -6.30 -37.03 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -2.41 Total: 5.42 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -2.47 Total: 2.58 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.16 Total: -37.84 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -0.84 Total: -25.35 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.73 -6.30 -37.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066508.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.550 kcal (2) G-P(sol) polarization free energy of solvation -30.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds