Wall clock time and date at job start Sun Mar 29 2020 23:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48504 * 109.47325 * 269.99851 * 3 2 1 5 5 H 1.48497 * 109.47236 * 29.99957 * 3 2 1 6 6 H 1.48508 * 109.47115 * 150.00053 * 3 2 1 7 7 C 1.37877 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99899 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.47225 * 179.97438 * 10 9 7 12 12 O 1.20824 * 119.99439 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00047 * 179.97438 * 11 10 9 14 14 C 1.45206 * 117.00148 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47051 * 180.02562 * 14 13 11 16 16 C 1.38627 * 120.80410 * 359.97438 * 15 14 13 17 17 C 1.38195 * 119.19489 * 180.02562 * 16 15 14 18 18 N 1.31875 * 120.81767 * 0.02562 * 17 16 15 19 19 C 1.31842 * 121.75256 * 359.97438 * 18 17 16 20 20 C 1.38463 * 120.72564 * 359.97438 * 19 18 17 21 21 F 1.35104 * 120.44484 * 179.97438 * 20 19 18 22 22 H 0.97002 * 120.00468 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47585 * 59.99576 * 9 7 2 24 24 H 1.09006 * 109.47248 * 299.99496 * 9 7 2 25 25 H 1.08998 * 109.47431 * 59.99802 * 10 9 7 26 26 H 1.09004 * 109.47118 * 299.99244 * 10 9 7 27 27 H 1.08998 * 109.46492 * 59.99689 * 14 13 11 28 28 H 1.08997 * 109.47021 * 300.00330 * 14 13 11 29 29 H 1.08005 * 120.40564 * 0.05027 * 16 15 14 30 30 H 1.07998 * 119.58847 * 179.72759 * 17 16 15 31 31 H 1.07999 * 119.63475 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6364 -0.0014 11 6 5.5286 -2.6364 -0.0014 12 8 6.1326 -1.5900 -0.0009 13 8 6.1997 -3.7988 -0.0020 14 6 7.6498 -3.7228 -0.0026 15 6 8.2258 -5.1153 -0.0039 16 6 7.3968 -6.2264 -0.0039 17 6 7.9606 -7.4881 -0.0045 18 7 9.2703 -7.6429 -0.0047 19 6 10.0909 -6.6109 -0.0048 20 6 9.5995 -5.3164 -0.0052 21 9 10.4456 -4.2631 -0.0047 22 1 -0.4851 0.8400 0.0004 23 1 3.8745 -0.6806 0.8905 24 1 3.8752 -0.6796 -0.8895 25 1 3.6586 -3.1493 -0.8920 26 1 3.6580 -3.1512 0.8880 27 1 7.9860 -3.1909 0.8874 28 1 7.9854 -3.1904 -0.8926 29 1 6.3233 -6.1075 -0.0037 30 1 7.3208 -8.3582 0.0000 31 1 11.1580 -6.7772 -0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836007772.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:28 Heat of formation + Delta-G solvation = -105.189091 kcal Electronic energy + Delta-G solvation = -17420.475974 eV Core-core repulsion = 14195.455172 eV Total energy + Delta-G solvation = -3225.020802 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.34689 -40.63869 -40.00211 -36.64626 -33.73122 -33.54468 -31.49077 -31.24753 -28.05931 -26.25390 -23.96590 -22.80845 -21.75302 -19.95734 -17.98674 -17.93771 -17.22579 -17.02113 -16.75824 -16.48233 -16.05172 -15.38059 -14.49766 -14.27654 -14.19380 -14.08446 -13.68847 -13.32925 -12.83490 -12.73426 -12.60124 -12.09642 -11.52739 -11.10307 -11.00029 -10.42113 -10.24748 -10.06374 -10.01172 -9.88489 -9.78852 -9.34513 -9.32099 -8.60650 -6.12087 -4.12555 0.52333 0.65240 2.52765 2.64118 3.23647 3.30630 3.38009 3.46316 3.64544 4.03614 4.10144 4.38718 4.41693 4.46989 4.95030 4.98905 5.14068 5.19627 5.22581 5.38135 5.46484 5.70410 5.89226 5.91844 6.21510 6.34159 6.61806 7.16157 7.23366 7.42110 7.64441 8.02818 8.40795 8.89718 9.49425 11.00381 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.046834 B = 0.003820 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.710905 B = 7328.514869 C = 7900.477145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.076 0.924 9 C -0.003 4.003 10 C -0.094 4.094 11 C 0.460 3.540 12 O -0.506 6.506 13 O -0.360 6.360 14 C 0.105 3.895 15 C -0.078 4.078 16 C -0.121 4.121 17 C 0.090 3.910 18 N -0.460 5.460 19 C 0.076 3.924 20 C 0.052 3.948 21 F -0.127 7.127 22 H 0.265 0.735 23 H 0.026 0.974 24 H 0.022 0.978 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.159 0.841 30 H 0.168 0.832 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.857 -13.506 0.025 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.131 4.131 11 C 0.304 3.696 12 O -0.393 6.393 13 O -0.278 6.278 14 C 0.031 3.969 15 C -0.086 4.086 16 C -0.141 4.141 17 C -0.067 4.067 18 N -0.169 5.169 19 C -0.083 4.083 20 C 0.030 3.970 21 F -0.105 7.105 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.176 0.824 30 H 0.185 0.815 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 18.283 -13.872 0.028 22.950 hybrid contribution 0.319 2.077 -0.027 2.102 sum 18.602 -11.795 0.002 22.026 Atomic orbital electron populations 1.69895 1.06280 1.27151 1.50419 1.24951 0.94725 0.99212 0.94165 0.86809 0.80565 0.83429 0.78818 1.20133 1.21260 1.18622 1.21005 0.88740 0.94830 1.52076 0.90604 1.19498 0.97016 0.89505 0.98002 1.21580 0.82794 1.03736 1.05017 1.24842 0.92731 0.80636 0.71416 1.90647 1.70557 1.32946 1.45107 1.86494 1.19512 1.36721 1.85090 1.21456 0.78953 0.92403 1.04081 1.20229 0.91870 0.96747 0.99789 1.22116 1.02662 0.91444 0.97838 1.22948 0.90986 0.97222 0.95495 1.67731 1.05021 1.33221 1.10908 1.22876 1.01171 0.85938 0.98276 1.18544 0.87017 0.85785 1.05624 1.91542 1.69890 1.55335 1.93761 0.92532 0.95554 0.96007 0.88121 0.88092 0.89048 0.89056 0.82354 0.81478 0.81344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.53 -14.54 9.66 -34.44 -0.33 -14.87 16 8 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 -0.06 3.33 -27.89 -0.09 -0.16 16 10 C -0.09 -1.71 5.75 -27.88 -0.16 -1.87 16 11 C 0.46 7.98 7.96 36.01 0.29 8.27 16 12 O -0.51 -10.30 15.73 -18.75 -0.29 -10.60 16 13 O -0.36 -5.08 8.80 -39.24 -0.35 -5.42 16 14 C 0.11 1.30 5.53 36.00 0.20 1.50 16 15 C -0.08 -0.83 5.92 -104.26 -0.62 -1.45 16 16 C -0.12 -1.14 9.45 -39.45 -0.37 -1.51 16 17 C 0.09 0.77 11.18 -17.55 -0.20 0.57 16 18 N -0.46 -4.54 10.36 -13.20 -0.14 -4.67 16 19 C 0.08 0.69 11.17 -17.46 -0.20 0.49 16 20 C 0.05 0.53 7.29 -39.28 -0.29 0.24 16 21 F -0.13 -1.35 16.89 2.25 0.04 -1.31 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 24 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 25 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 26 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 27 H 0.09 1.13 8.13 -51.93 -0.42 0.70 16 28 H 0.09 1.12 8.13 -51.93 -0.42 0.70 16 29 H 0.16 1.37 7.10 -52.48 -0.37 0.99 16 30 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 283.43 15.07 4.27 4.27 Total: -1.00 -31.96 283.43 -5.49 -37.44 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -3.26 Total: -3.62 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -1.87 Total: -6.84 kcal Atomic # 7 Polarization: -31.69 SS G_CDS: 0.64 Total: -31.05 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.64 Total: -16.02 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.96 -5.49 -37.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836007772.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.745 kcal (2) G-P(sol) polarization free energy of solvation -31.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds