Wall clock time and date at job start Sun Mar 29 2020 23:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99665 * 2 1 4 4 H 1.48504 * 109.47325 * 269.99851 * 3 2 1 5 5 H 1.48497 * 109.47236 * 29.99957 * 3 2 1 6 6 H 1.48508 * 109.47115 * 150.00053 * 3 2 1 7 7 C 1.37877 * 120.00217 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99899 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47040 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.47225 * 179.97438 * 10 9 7 12 12 O 1.20824 * 119.99439 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00047 * 179.97438 * 11 10 9 14 14 C 1.45206 * 117.00148 * 179.97438 * 13 11 10 15 15 C 1.50694 * 109.47051 * 180.02562 * 14 13 11 16 16 C 1.38627 * 120.80410 * 359.97438 * 15 14 13 17 17 C 1.38195 * 119.19489 * 180.02562 * 16 15 14 18 18 N 1.31875 * 120.81767 * 0.02562 * 17 16 15 19 19 C 1.31842 * 121.75256 * 359.97438 * 18 17 16 20 20 C 1.38463 * 120.72564 * 359.97438 * 19 18 17 21 21 F 1.35104 * 120.44484 * 179.97438 * 20 19 18 22 22 H 0.97002 * 120.00468 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47585 * 59.99576 * 9 7 2 24 24 H 1.09006 * 109.47248 * 299.99496 * 9 7 2 25 25 H 1.08998 * 109.47431 * 59.99802 * 10 9 7 26 26 H 1.09004 * 109.47118 * 299.99244 * 10 9 7 27 27 H 1.08998 * 109.46492 * 59.99689 * 14 13 11 28 28 H 1.08997 * 109.47021 * 300.00330 * 14 13 11 29 29 H 1.08005 * 120.40564 * 0.05027 * 16 15 14 30 30 H 1.07998 * 119.58847 * 179.72759 * 17 16 15 31 31 H 1.07999 * 119.63475 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0215 -2.6364 -0.0014 11 6 5.5286 -2.6364 -0.0014 12 8 6.1326 -1.5900 -0.0009 13 8 6.1997 -3.7988 -0.0020 14 6 7.6498 -3.7228 -0.0026 15 6 8.2258 -5.1153 -0.0039 16 6 7.3968 -6.2264 -0.0039 17 6 7.9606 -7.4881 -0.0045 18 7 9.2703 -7.6429 -0.0047 19 6 10.0909 -6.6109 -0.0048 20 6 9.5995 -5.3164 -0.0052 21 9 10.4456 -4.2631 -0.0047 22 1 -0.4851 0.8400 0.0004 23 1 3.8745 -0.6806 0.8905 24 1 3.8752 -0.6796 -0.8895 25 1 3.6586 -3.1493 -0.8920 26 1 3.6580 -3.1512 0.8880 27 1 7.9860 -3.1909 0.8874 28 1 7.9854 -3.1904 -0.8926 29 1 6.3233 -6.1075 -0.0037 30 1 7.3208 -8.3582 0.0000 31 1 11.1580 -6.7772 -0.0045 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836007772.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:11:28 Heat of formation + Delta-G solvation = -124.461466 kcal Electronic energy + Delta-G solvation = -17421.311687 eV Core-core repulsion = 14195.455172 eV Total energy + Delta-G solvation = -3225.856514 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.13100 -41.73864 -40.96873 -37.93342 -35.64283 -34.45428 -33.40747 -31.94576 -29.27185 -27.82815 -24.80002 -23.90658 -23.12799 -21.47986 -19.43967 -18.80422 -18.57618 -17.91747 -17.91622 -17.74401 -16.95934 -16.58863 -16.25317 -15.57283 -15.19745 -14.91041 -14.78482 -14.56326 -14.41440 -14.15510 -13.72131 -13.35869 -12.94643 -12.91910 -12.25037 -12.21198 -12.02145 -11.80755 -11.52478 -11.41005 -10.78885 -10.74475 -10.70278 -10.05732 -8.31765 -6.35808 -0.20387 -0.07985 1.14456 1.34305 1.36914 1.43507 1.49785 2.34309 2.53198 2.90506 3.03979 3.15275 3.46507 3.61574 3.72679 3.86549 3.99750 4.14926 4.33194 4.40337 4.44475 4.61444 4.76895 4.84475 4.97619 5.22116 5.31406 5.36463 5.53154 5.58468 6.21131 6.65339 6.73177 6.74874 7.29563 8.83661 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.046834 B = 0.003820 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.710905 B = 7328.514869 C = 7900.477145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.530 4.530 8 H 0.054 0.946 9 C -0.001 4.001 10 C -0.089 4.089 11 C 0.472 3.528 12 O -0.539 6.539 13 O -0.346 6.346 14 C 0.104 3.896 15 C -0.089 4.089 16 C -0.125 4.125 17 C 0.096 3.904 18 N -0.476 5.476 19 C 0.080 3.920 20 C 0.042 3.958 21 F -0.133 7.133 22 H 0.268 0.732 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.119 0.881 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.166 0.834 30 H 0.198 0.802 31 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.245 -14.483 -0.007 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.568 4.568 8 H 0.072 0.928 9 C -0.038 4.038 10 C -0.126 4.126 11 C 0.318 3.682 12 O -0.428 6.428 13 O -0.263 6.263 14 C 0.031 3.969 15 C -0.098 4.098 16 C -0.144 4.144 17 C -0.060 4.060 18 N -0.184 5.184 19 C -0.078 4.078 20 C 0.020 3.980 21 F -0.112 7.112 22 H 0.077 0.923 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.137 0.863 26 H 0.137 0.863 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.184 0.816 30 H 0.214 0.786 31 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 19.687 -14.881 -0.005 24.678 hybrid contribution -0.100 2.240 -0.016 2.242 sum 19.587 -12.641 -0.021 23.311 Atomic orbital electron populations 1.70014 1.07850 1.28182 1.52200 1.25788 0.95469 1.02856 0.94215 0.85849 0.79340 0.79484 0.79171 1.19346 1.20588 1.18202 1.21339 0.90881 0.93928 1.50672 0.92790 1.19351 0.94400 0.92953 0.97143 1.21364 0.83767 1.00612 1.06864 1.24433 0.92367 0.80803 0.70643 1.90643 1.71126 1.34231 1.46818 1.86445 1.20755 1.34739 1.84314 1.21568 0.77419 0.93850 1.04105 1.20193 0.92392 0.96119 1.01075 1.22253 1.02920 0.91427 0.97834 1.23421 0.90931 0.97857 0.93778 1.67823 1.05685 1.33472 1.11458 1.23250 1.02327 0.85231 0.96984 1.18646 0.86725 0.86144 1.06452 1.91526 1.70028 1.55683 1.93920 0.92318 0.96459 0.96584 0.86322 0.86338 0.89183 0.89172 0.81614 0.78571 0.79004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.49 13.96 21.45 0.30 -57.19 16 2 C 0.01 0.85 5.47 84.66 0.46 1.31 16 3 Si 0.94 44.81 27.47 68.60 1.88 46.69 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 6 H -0.26 -12.07 6.54 99.48 0.65 -11.42 16 7 C -0.53 -29.18 9.66 25.60 0.25 -28.93 16 8 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 9 C 0.00 -0.04 3.33 29.85 0.10 0.06 16 10 C -0.09 -3.10 5.75 29.85 0.17 -2.92 16 11 C 0.47 15.65 7.96 71.24 0.57 16.22 16 12 O -0.54 -21.38 15.73 21.97 0.35 -21.04 16 13 O -0.35 -9.11 8.80 -51.34 -0.45 -9.56 16 14 C 0.10 2.45 5.53 71.23 0.39 2.84 16 15 C -0.09 -1.77 5.92 -19.63 -0.12 -1.89 16 16 C -0.12 -2.07 9.45 22.35 0.21 -1.86 16 17 C 0.10 1.39 11.18 84.68 0.95 2.33 16 18 N -0.48 -8.24 10.36 -195.66 -2.03 -10.27 16 19 C 0.08 1.29 11.17 84.74 0.95 2.23 16 20 C 0.04 0.79 7.29 22.47 0.16 0.95 16 21 F -0.13 -2.70 16.89 44.97 0.76 -1.94 16 22 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.02 0.82 7.16 -2.39 -0.02 0.80 16 24 H 0.02 0.75 7.53 -2.38 -0.02 0.73 16 25 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 26 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 27 H 0.09 2.15 8.13 -2.39 -0.02 2.13 16 28 H 0.09 2.14 8.13 -2.39 -0.02 2.13 16 29 H 0.17 2.45 7.10 -2.91 -0.02 2.43 16 30 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 31 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -67.66 283.43 6.00 -61.67 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: 1.09 Total: 1.30 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 4.09 Total: -9.66 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -1.73 Total: -67.46 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.11 Total: -30.60 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.76 Total: -1.94 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Total: -67.66 6.00 -61.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836007772.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.793 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds