Wall clock time and date at job start Sun Mar 29 2020 23:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46967 * 2 1 4 4 H 1.09006 * 109.47027 * 55.00074 * 3 2 1 5 5 C 1.50701 * 109.47027 * 174.99723 * 3 2 1 6 6 H 1.07996 * 119.99866 * 120.00573 * 5 3 2 7 7 C 1.37872 * 120.00061 * 300.00248 * 5 3 2 8 8 N 1.31509 * 120.00326 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99877 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47218 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46907 * 120.00286 * 9 7 5 12 12 H 1.48503 * 109.47265 * 240.00024 * 9 7 5 13 13 O 1.45195 * 109.47729 * 295.00124 * 3 2 1 14 14 C 1.34699 * 117.00033 * 89.99696 * 13 3 2 15 15 O 1.21449 * 120.00249 * 0.02562 * 14 13 3 16 16 C 1.47889 * 120.00205 * 180.02562 * 14 13 3 17 17 N 1.32850 * 119.75233 * 0.02562 * 16 14 13 18 18 C 1.31418 * 121.66600 * 179.75364 * 17 16 14 19 19 C 1.38707 * 120.98103 * 0.49739 * 18 17 16 20 20 C 1.38441 * 119.40616 * 359.49078 * 19 18 17 21 21 C 1.38976 * 118.46730 * 0.25402 * 20 19 18 22 22 F 1.35098 * 120.50779 * 180.02562 * 21 20 19 23 23 H 1.09001 * 109.47375 * 59.99902 * 1 2 3 24 24 H 1.09005 * 109.47412 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47346 * 299.99972 * 1 2 3 26 26 H 1.08996 * 109.47015 * 240.00062 * 2 1 3 27 27 H 1.09000 * 109.46917 * 119.99830 * 2 1 3 28 28 H 0.97000 * 120.00677 * 180.02562 * 8 7 5 29 29 H 1.08000 * 119.50982 * 180.24175 * 18 17 16 30 30 H 1.08002 * 120.29950 * 179.77477 * 19 18 17 31 31 H 1.07997 * 120.76742 * 180.27777 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5418 1.4443 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 3.4062 0.3366 2.1728 9 14 6.0049 0.8801 1.3812 10 1 6.5987 1.5453 0.1938 11 1 6.3998 1.6157 2.6093 12 1 6.4962 -0.5190 1.4627 13 8 1.6558 2.0918 -1.2406 14 6 0.4685 2.7277 -1.2559 15 8 -0.2267 2.7400 -0.2601 16 6 0.0114 3.4111 -2.4852 17 7 0.7755 3.3942 -3.5718 18 6 0.4042 3.9847 -4.6856 19 6 -0.8037 4.6617 -4.7664 20 6 -1.6337 4.7057 -3.6592 21 6 -1.2199 4.0687 -2.4954 22 9 -1.9976 4.0853 -1.3909 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8291 -0.0613 2.9498 29 1 1.0511 3.9459 -5.5496 30 1 -1.0963 5.1463 -5.6862 31 1 -2.5810 5.2227 -3.6991 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850979187.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:57:24 Heat of formation + Delta-G solvation = -95.935449 kcal Electronic energy + Delta-G solvation = -18522.501129 eV Core-core repulsion = 15297.881595 eV Total energy + Delta-G solvation = -3224.619534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.95955 -40.36712 -39.11084 -35.79072 -33.52808 -32.73295 -31.42019 -31.03758 -27.33380 -25.19879 -23.70450 -23.06819 -21.28829 -19.65587 -17.93809 -17.68291 -17.17985 -16.43194 -16.05197 -15.93900 -15.07571 -15.04163 -14.47821 -14.05834 -13.50883 -13.28530 -13.06371 -12.82652 -12.59206 -12.07034 -11.45537 -11.31451 -11.15224 -10.94485 -10.62298 -10.25369 -10.15224 -10.11693 -9.74756 -9.55215 -9.35744 -9.14310 -8.77009 -8.42726 -6.15292 -4.21716 0.38580 0.86351 2.82540 3.21430 3.26678 3.34036 3.41355 3.74769 3.92107 4.17926 4.35483 4.43021 4.60962 4.90690 5.16699 5.24922 5.50645 5.64397 5.78707 6.25176 6.30842 6.34711 6.48099 6.88176 6.96822 7.18861 7.21904 7.55800 7.65210 7.75371 7.93445 8.17707 8.59880 8.90785 9.43028 10.91768 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.031088 B = 0.005959 C = 0.005383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.461557 B = 4697.989991 C = 5200.649175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.218 3.782 4 H 0.048 0.952 5 C -0.518 4.518 6 H 0.071 0.929 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.326 6.326 14 C 0.504 3.496 15 O -0.494 6.494 16 C 0.074 3.926 17 N -0.403 5.403 18 C 0.082 3.918 19 C -0.123 4.123 20 C -0.123 4.123 21 C 0.108 3.892 22 F -0.105 7.105 23 H 0.029 0.971 24 H 0.034 0.966 25 H 0.054 0.946 26 H 0.043 0.957 27 H 0.110 0.890 28 H 0.266 0.734 29 H 0.171 0.829 30 H 0.150 0.850 31 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 7.215 -12.995 17.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.165 3.835 4 H 0.066 0.934 5 C -0.556 4.556 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.241 6.241 14 C 0.346 3.654 15 O -0.383 6.383 16 C -0.064 4.064 17 N -0.113 5.113 18 C -0.078 4.078 19 C -0.143 4.143 20 C -0.149 4.149 21 C 0.086 3.914 22 F -0.083 7.083 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.128 0.872 28 H 0.075 0.925 29 H 0.188 0.812 30 H 0.168 0.832 31 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.978 6.627 -12.348 16.126 hybrid contribution -0.131 0.389 0.334 0.530 sum -8.109 7.017 -12.014 16.103 Atomic orbital electron populations 1.21866 0.98427 0.99094 1.00663 1.22025 0.92580 0.99231 1.03505 1.20812 0.95291 0.88876 0.78479 0.93385 1.21078 0.89505 1.38756 1.06244 0.91099 1.24880 0.99263 0.94773 0.95039 1.69897 1.35295 1.37992 1.09500 0.86222 0.83886 0.77860 0.78200 1.19434 1.20791 1.20712 1.86652 1.32306 1.61348 1.43764 1.20337 0.81968 0.77444 0.85653 1.90861 1.55511 1.58132 1.33753 1.20788 0.91396 1.00138 0.94092 1.67882 1.31145 1.14168 0.98111 1.23056 0.94978 0.93870 0.95936 1.22351 0.94622 0.98313 0.98981 1.21662 1.01922 0.99938 0.91383 1.18694 0.89768 0.98279 0.84708 1.91632 1.72590 1.93917 1.50121 0.95203 0.94681 0.92709 0.93807 0.87176 0.92455 0.81156 0.83207 0.82774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.56 37.16 0.32 -2.94 16 2 C -0.14 -3.46 5.49 -26.73 -0.15 -3.61 16 3 C 0.22 5.98 2.25 -27.88 -0.06 5.91 16 4 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 5 C -0.52 -14.83 8.90 -34.44 -0.31 -15.14 16 6 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.39 11.29 55.43 0.63 -24.76 16 9 Si 0.91 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 O -0.33 -8.28 9.62 -40.49 -0.39 -8.67 16 14 C 0.50 11.51 6.40 34.68 0.22 11.73 16 15 O -0.49 -12.04 12.50 -19.23 -0.24 -12.28 16 16 C 0.07 1.34 6.75 -82.97 -0.56 0.78 16 17 N -0.40 -6.64 10.12 -9.77 -0.10 -6.73 16 18 C 0.08 0.90 11.18 -17.56 -0.20 0.70 16 19 C -0.12 -1.01 10.11 -39.33 -0.40 -1.41 16 20 C -0.12 -1.23 10.16 -39.23 -0.40 -1.63 16 21 C 0.11 1.63 7.32 -38.80 -0.28 1.35 16 22 F -0.10 -1.77 15.55 2.25 0.04 -1.73 16 23 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.05 1.29 7.79 -51.93 -0.40 0.89 16 26 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.11 3.02 5.95 -51.93 -0.31 2.71 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 30 H 0.15 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 275.88 15.07 4.16 4.16 Total: -1.00 -32.48 275.88 -5.90 -38.38 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -3.06 Total: -2.08 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -1.91 Total: -2.62 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.53 Total: -31.50 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.63 Total: -20.95 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.48 -5.90 -38.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979187.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.555 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds