Wall clock time and date at job start Sun Mar 29 2020 23:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38185 * 120.84076 * 2 1 4 4 C 1.38722 * 119.29299 * 180.02562 * 3 2 1 5 5 F 1.35097 * 119.48709 * 180.02562 * 4 3 2 6 6 N 1.32187 * 121.02363 * 0.02562 * 4 3 2 7 7 C 1.31648 * 121.85305 * 359.97261 * 6 4 3 8 8 C 1.39613 * 120.58251 * 0.03005 * 7 6 4 9 9 C 1.47600 * 120.53459 * 179.70283 * 8 7 6 10 10 O 1.21479 * 120.00140 * 173.92433 * 9 8 7 11 11 O 1.34727 * 119.99629 * 353.92055 * 9 8 7 12 12 C 1.45206 * 116.99868 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47364 * 179.97438 * 12 11 9 14 14 C 1.50691 * 109.47374 * 179.97438 * 13 12 11 15 15 H 1.08009 * 119.99949 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00304 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00091 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 120.00322 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47249 * 89.99278 * 18 16 14 20 20 H 1.48495 * 109.47067 * 209.99738 * 18 16 14 21 21 H 1.48501 * 109.46860 * 329.99568 * 18 16 14 22 22 H 1.08999 * 109.46757 * 263.63724 * 1 2 3 23 23 H 1.09008 * 109.46933 * 23.63409 * 1 2 3 24 24 H 1.08995 * 109.47126 * 143.63275 * 1 2 3 25 25 H 1.07995 * 120.35426 * 0.02562 * 3 2 1 26 26 H 1.07990 * 119.71093 * 180.02562 * 7 6 4 27 27 H 1.09000 * 109.46492 * 300.00042 * 12 11 9 28 28 H 1.08997 * 109.47207 * 59.99239 * 12 11 9 29 29 H 1.08999 * 109.47093 * 299.99924 * 13 12 11 30 30 H 1.09005 * 109.46816 * 59.99726 * 13 12 11 31 31 H 0.96997 * 120.00318 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2154 1.1865 0.0000 4 6 3.6022 1.1490 -0.0005 5 9 4.2987 2.3066 0.0000 6 7 4.2526 -0.0018 -0.0016 7 6 3.6210 -1.1569 -0.0016 8 6 2.2256 -1.2034 -0.0011 9 6 1.5185 -2.4990 -0.0077 10 8 0.3093 -2.5317 0.1040 11 8 2.2143 -3.6454 -0.1378 12 6 1.4533 -4.8821 -0.1366 13 6 2.4070 -6.0680 -0.2937 14 6 1.6174 -7.3514 -0.2919 15 1 0.5425 -7.3240 -0.1893 16 6 2.2669 -8.5607 -0.4211 17 7 3.5756 -8.5942 -0.5465 18 14 1.2879 -10.1517 -0.4195 19 1 0.8981 -10.4945 -1.8107 20 1 2.1201 -11.2444 0.1450 21 1 0.0672 -9.9809 0.4088 22 1 -0.3633 -0.1139 1.0213 23 1 -0.3633 0.9415 -0.4120 24 1 -0.3633 -0.8275 -0.6093 25 1 1.6951 2.1328 0.0004 26 1 4.1871 -2.0765 -0.0020 27 1 0.9108 -4.9738 0.8043 28 1 0.7450 -4.8736 -0.9650 29 1 2.9492 -5.9760 -1.2348 30 1 3.1157 -6.0766 0.5345 31 1 4.0326 -9.4449 -0.6378 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870005690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:23:52 Heat of formation + Delta-G solvation = -103.523552 kcal Electronic energy + Delta-G solvation = -17551.177337 eV Core-core repulsion = 14326.228759 eV Total energy + Delta-G solvation = -3224.948578 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.36504 -40.90592 -39.39840 -36.40347 -34.16630 -33.41547 -31.69867 -30.20735 -28.39870 -25.49394 -24.51142 -22.82974 -21.37246 -20.79343 -18.24958 -17.83474 -17.36497 -16.57866 -16.47922 -16.03183 -15.87911 -14.92445 -14.56942 -14.16264 -14.11540 -13.75810 -13.15440 -13.04888 -12.86724 -12.74115 -12.48585 -12.35757 -11.30955 -11.13623 -10.81484 -10.75114 -10.40387 -10.02389 -9.91931 -9.73822 -9.65659 -9.37419 -9.34695 -8.48124 -6.14116 -4.18921 0.17012 0.73668 2.47865 2.89720 3.19505 3.26286 3.32807 3.36444 3.37976 4.08439 4.31127 4.34966 4.41967 4.80736 5.00944 5.16425 5.22699 5.36991 5.41628 5.46994 5.78349 5.93152 6.00834 6.07962 6.22725 6.55334 6.82049 7.25039 7.49424 7.56342 7.80480 8.01991 8.18710 8.86498 9.45899 10.97274 Molecular weight = 253.09amu Principal moments of inertia in cm(-1) A = 0.043053 B = 0.003902 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.209990 B = 7174.931919 C = 7795.870040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.048 3.952 3 C -0.212 4.212 4 C 0.336 3.664 5 F -0.108 7.108 6 N -0.525 5.525 7 C 0.204 3.796 8 C -0.190 4.190 9 C 0.509 3.491 10 O -0.505 6.505 11 O -0.351 6.351 12 C 0.077 3.923 13 C 0.024 3.976 14 C -0.528 4.528 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.104 0.896 25 H 0.155 0.845 26 H 0.189 0.811 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.019 18.670 1.000 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.041 3.959 3 C -0.233 4.233 4 C 0.184 3.816 5 F -0.087 7.087 6 N -0.240 5.240 7 C 0.047 3.953 8 C -0.194 4.194 9 C 0.353 3.647 10 O -0.396 6.396 11 O -0.267 6.267 12 C 0.005 3.995 13 C -0.013 4.013 14 C -0.566 4.566 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.527 5.527 18 Si 0.727 3.273 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.108 0.892 23 H 0.088 0.912 24 H 0.122 0.878 25 H 0.173 0.827 26 H 0.206 0.794 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.292 18.563 1.009 18.731 hybrid contribution -1.152 -0.684 0.009 1.340 sum -3.444 17.879 1.018 18.236 Atomic orbital electron populations 1.21190 0.88121 1.04208 1.04732 1.20358 0.97946 0.90086 0.87536 1.21648 0.92419 1.00316 1.08957 1.18455 0.86850 0.81926 0.94379 1.91644 1.80194 1.44135 1.92700 1.67161 1.41727 0.97696 1.17392 1.23133 0.90516 0.94954 0.86732 1.20236 0.95151 0.92159 1.11815 1.20592 0.85639 0.84850 0.73642 1.90767 1.14870 1.87946 1.45984 1.86569 1.42649 1.15558 1.81908 1.23731 0.95687 0.78878 1.01219 1.19189 0.94621 0.88650 0.98877 1.20957 0.93656 0.90277 1.51734 0.92229 1.24977 0.94958 0.99338 0.94806 1.69967 1.07471 1.26320 1.48962 0.86471 0.79883 0.82585 0.78372 1.20469 1.21033 1.19711 0.89236 0.91171 0.87810 0.82695 0.79440 0.92013 0.92040 0.95242 0.95224 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.22 8.85 36.01 0.32 -0.91 16 2 C 0.05 0.53 5.95 -103.92 -0.62 -0.08 16 3 C -0.21 -2.04 9.75 -39.42 -0.38 -2.42 16 4 C 0.34 3.90 8.41 -17.22 -0.14 3.75 16 5 F -0.11 -1.21 17.29 2.25 0.04 -1.18 16 6 N -0.52 -6.94 10.36 -13.20 -0.14 -7.08 16 7 C 0.20 2.62 10.79 -17.12 -0.18 2.43 16 8 C -0.19 -2.52 5.89 -104.84 -0.62 -3.14 16 9 C 0.51 8.27 7.84 34.55 0.27 8.54 16 10 O -0.50 -8.82 13.29 -19.25 -0.26 -9.08 16 11 O -0.35 -6.47 9.51 -40.57 -0.39 -6.85 16 12 C 0.08 1.61 5.41 37.16 0.20 1.81 16 13 C 0.02 0.60 5.35 -27.89 -0.15 0.45 16 14 C -0.53 -14.43 9.11 -34.45 -0.31 -14.75 16 15 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 18 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.07 0.49 8.06 -51.92 -0.42 0.07 16 24 H 0.10 1.23 5.95 -51.93 -0.31 0.92 16 25 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 26 H 0.19 2.23 7.63 -52.49 -0.40 1.83 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 283.86 15.07 4.28 4.28 Total: -1.00 -29.83 283.86 -5.67 -35.50 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: -3.21 Total: -3.75 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.72 Total: -2.70 kcal Atomic # 7 Polarization: -32.78 SS G_CDS: 0.60 Total: -32.18 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.64 Total: -15.93 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.83 -5.67 -35.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870005690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.027 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds