Wall clock time and date at job start Sun Mar 29 2020 22:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34768 * 116.99824 * 2 1 4 4 O 1.21536 * 120.00132 * 0.02562 * 3 2 1 5 5 C 1.47235 * 119.99868 * 179.97438 * 3 2 1 6 6 C 1.36493 * 127.20148 * 359.97438 * 5 3 2 7 7 O 1.33631 * 108.38760 * 180.02562 * 6 5 3 8 8 C 1.34224 * 110.91831 * 359.97438 * 7 6 5 9 9 C 1.50694 * 125.42216 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.47470 * 270.02739 * 9 8 7 11 11 C 1.34773 * 120.00310 * 180.02562 * 10 9 8 12 12 O 1.21689 * 120.00046 * 0.02562 * 11 10 9 13 13 C 1.46381 * 120.00227 * 179.97438 * 11 10 9 14 14 H 1.08005 * 119.99591 * 353.93920 * 13 11 10 15 15 C 1.40046 * 120.00335 * 173.93901 * 13 11 10 16 16 N 1.30674 * 119.99602 * 6.15497 * 15 13 11 17 17 Si 1.86800 * 120.00113 * 186.15209 * 15 13 11 18 18 H 1.48498 * 109.46890 * 94.98235 * 17 15 13 19 19 H 1.48493 * 109.47181 * 214.98152 * 17 15 13 20 20 H 1.48495 * 109.47141 * 334.98597 * 17 15 13 21 21 C 1.34156 * 109.14757 * 359.97438 * 8 7 6 22 22 H 1.09002 * 109.46813 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47021 * 299.99789 * 1 2 3 24 24 H 1.09003 * 109.46675 * 59.99800 * 1 2 3 25 25 H 1.08003 * 125.80946 * 359.97438 * 6 5 3 26 26 H 1.09007 * 109.47789 * 30.02819 * 9 8 7 27 27 H 1.08997 * 109.47097 * 150.02845 * 9 8 7 28 28 H 0.97007 * 119.99953 * 359.97438 * 10 9 8 29 29 H 0.97000 * 119.99768 * 180.02562 * 16 15 13 30 30 H 1.07995 * 127.02768 * 179.73398 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2201 0.0005 5 6 3.5342 1.2779 0.0006 6 6 4.4152 0.2354 0.0016 7 8 5.6558 0.7320 0.0024 8 6 5.6348 2.0740 0.0013 9 6 6.8490 2.9665 0.0023 10 7 7.2411 3.2564 1.3838 11 6 8.3081 4.0416 1.6309 12 8 8.9457 4.5104 0.7065 13 6 8.6995 4.3317 3.0113 14 1 8.0785 3.9988 3.8299 15 6 9.8790 5.0407 3.2706 16 7 10.5673 5.5474 2.2821 17 14 10.4683 5.2623 5.0293 18 1 11.4529 4.2007 5.3588 19 1 11.1096 6.5939 5.1724 20 1 9.3108 5.1683 5.9547 21 6 4.3608 2.4942 -0.0008 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 4.1541 -0.8126 0.0026 26 1 7.6696 2.4645 -0.5105 27 1 6.6152 3.8986 -0.5121 28 1 6.7321 2.8836 2.1208 29 1 11.3845 6.0382 2.4616 30 1 4.0132 3.5167 0.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871059338.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:51:00 Heat of formation + Delta-G solvation = -109.020894 kcal Electronic energy + Delta-G solvation = -17459.723206 eV Core-core repulsion = 14222.163455 eV Total energy + Delta-G solvation = -3237.559750 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 253.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.65327 -40.25556 -37.36187 -36.54816 -33.86644 -32.95732 -32.38366 -30.30305 -28.07787 -26.78700 -24.78910 -24.06425 -21.17510 -20.34385 -19.79145 -18.08988 -17.27260 -16.92857 -16.64614 -16.10449 -16.02769 -15.34794 -14.61907 -14.12733 -14.00082 -13.60407 -13.45533 -13.16903 -12.91134 -12.47532 -12.24587 -12.01171 -11.40931 -11.19676 -11.03931 -10.94844 -10.77805 -10.50894 -10.25465 -9.94016 -8.88763 -8.82698 -7.68035 -7.66379 -6.24125 -4.68524 1.04752 1.91318 2.42548 2.81531 2.96467 3.12905 3.20344 3.24074 4.09008 4.48888 4.49483 4.53373 4.84494 4.87934 4.92532 4.97325 5.21971 5.42544 5.51429 5.69132 5.78917 6.03730 6.11595 6.16129 6.33162 7.01460 7.40406 7.60631 7.80889 7.94766 8.26951 8.98267 9.41565 10.52698 10.70639 Molecular weight = 253.08amu Principal moments of inertia in cm(-1) A = 0.041237 B = 0.003772 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.831400 B = 7420.918936 C = 7664.174229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.539 3.461 4 O -0.505 6.505 5 C -0.236 4.236 6 C 0.055 3.945 7 O -0.163 6.163 8 C -0.003 4.003 9 C 0.208 3.792 10 N -0.765 5.765 11 C 0.556 3.444 12 O -0.579 6.579 13 C -0.543 4.543 14 H 0.069 0.931 15 C 0.087 3.913 16 N -0.767 5.767 17 Si 0.910 3.090 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.149 4.149 22 H 0.102 0.898 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.219 0.781 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.384 0.616 29 H 0.269 0.731 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.209 -12.148 -2.989 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.278 6.278 3 C 0.385 3.615 4 O -0.393 6.393 5 C -0.239 4.239 6 C -0.017 4.017 7 O -0.057 6.057 8 C -0.052 4.052 9 C 0.084 3.916 10 N -0.422 5.422 11 C 0.360 3.640 12 O -0.462 6.462 13 C -0.580 4.580 14 H 0.088 0.912 15 C -0.133 4.133 16 N -0.395 5.395 17 Si 0.734 3.266 18 H -0.198 1.198 19 H -0.204 1.204 20 H -0.188 1.188 21 C -0.168 4.168 22 H 0.120 0.880 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.236 0.764 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.216 0.784 29 H 0.080 0.920 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -14.511 -11.528 -3.758 18.910 hybrid contribution -0.513 -0.058 1.193 1.300 sum -15.023 -11.587 -2.565 19.145 Atomic orbital electron populations 1.23268 0.75862 1.03675 1.02736 1.86531 1.23674 1.32732 1.84813 1.20060 0.87595 0.81361 0.72523 1.90856 1.66514 1.35971 1.46007 1.20484 0.90150 0.94906 1.18321 1.24666 0.80592 0.99289 0.97117 1.83844 1.29893 1.22136 1.69830 1.22787 0.97355 0.79960 1.05092 1.19390 0.89366 0.94137 0.88743 1.46293 1.34938 1.57054 1.03945 1.18265 0.77709 0.77247 0.90733 1.90612 1.54251 1.54818 1.46506 1.20861 1.08490 1.37839 0.90843 0.91234 1.25714 0.95923 0.93321 0.98310 1.70022 1.12506 1.24876 1.32097 0.86321 0.79365 0.78057 0.82815 1.19763 1.20415 1.18845 1.22497 0.90305 0.98670 1.05367 0.87975 0.91762 0.91819 0.76441 0.91076 0.89578 0.78408 0.92004 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.83 10.42 -40.68 -0.42 -4.25 16 3 C 0.54 7.24 7.95 34.39 0.27 7.52 16 4 O -0.50 -8.16 16.77 -19.29 -0.32 -8.48 16 5 C -0.24 -3.14 6.31 -103.30 -0.65 -3.79 16 6 C 0.05 0.61 11.94 30.10 0.36 0.97 16 7 O -0.16 -2.27 10.52 7.68 0.08 -2.19 16 8 C 0.00 -0.05 6.65 -35.75 -0.24 -0.29 16 9 C 0.21 3.87 6.19 -5.20 -0.03 3.84 16 10 N -0.76 -16.82 5.54 -62.90 -0.35 -17.17 16 11 C 0.56 15.55 7.74 -12.99 -0.10 15.45 16 12 O -0.58 -18.38 15.05 5.20 0.08 -18.30 16 13 C -0.54 -15.19 9.53 -35.63 -0.34 -15.53 16 14 H 0.07 1.78 7.86 -52.48 -0.41 1.37 16 15 C 0.09 2.41 5.49 -17.37 -0.10 2.32 16 16 N -0.77 -22.73 11.85 55.55 0.66 -22.08 16 17 Si 0.91 19.95 29.56 -169.99 -5.03 14.93 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 21 C -0.15 -2.20 10.90 -37.44 -0.41 -2.60 16 22 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.22 1.44 8.06 -52.48 -0.42 1.01 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 27 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 28 H 0.38 7.61 8.44 -40.82 -0.34 7.27 16 29 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 30 H 0.16 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 285.72 15.07 4.31 4.31 Total: -1.00 -35.50 285.72 -4.01 -39.51 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -2.85 Total: 4.50 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -0.16 Total: 9.23 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.31 Total: -39.25 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.59 Total: -33.22 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.50 -4.01 -39.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871059338.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.512 kcal (2) G-P(sol) polarization free energy of solvation -35.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds